Skip navigation

DSpace JSPUI

DSpace preserves and enables easy and open access to all types of digital content including text, images, moving images, mpegs and data sets

Learn More
DSpace logo
English
中文
  • Browse
    • Communities
      & Collections
    • Publication Year
    • Author
    • Title
    • Subject
    • Advisor
  • Search TDR
  • Rights Q&A
    • My Page
    • Receive email
      updates
    • Edit Profile
  1. NTU Theses and Dissertations Repository
  2. 生命科學院
  3. 生態學與演化生物學研究所
Please use this identifier to cite or link to this item: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/8694
Full metadata record
???org.dspace.app.webui.jsptag.ItemTag.dcfield???ValueLanguage
dc.contributor.advisor林雨德(Yu-Teh Kirk Lin)
dc.contributor.authorCheng-Wei Leeen
dc.contributor.author李徵葳zh_TW
dc.date.accessioned2021-05-20T19:59:50Z-
dc.date.available2010-04-19
dc.date.available2021-05-20T19:59:50Z-
dc.date.copyright2010-03-10
dc.date.issued2010
dc.date.submitted2010-02-22
dc.identifier.citationAdler GH (1996) Habitat relations of two endemic species of highland forest rodents in Taiwan. Zoological Studies 35, 105-110.
Adriaensen F, Chardon JP, De Blust G (2003) The application of 'least-cost' modelling as a functional landscape model. Landscape and Urban Planning 64, 233-247.
Bandelt H-J, Forster P, Rőhl A (1999) Median-joining networls for inferring intraspecific phylogenies. Molecular Biology and Evolution 16, 37-48.
Bellinvia E (2004) A phylogenetic study of the genus Apodemus by sequencing the mitochondrial DNA control region. Journal of Zoological Systematics and Evolutionary Research 42, 289-297.
Bohonak AJ (1999) Dispersal, gene flow, and population structure. Quarterly Review of Biology 74, 21-45.
Bohonak AJ (2002) IBD (isolation by distance): A program for analyses of isolation by distance. Journal of Heredity 93, 153-154.
Broquet T, Ray N, Petit E, Fryxell JM, Burel F (2006) Genetic isolation by distance and landscape connectivity in the American marten (Martes americana). Landscape Ecology 21, 877-889.
Brouat C, Sennedot F, Audiot P, Leblois R, Rasplus JY (2003) Fine-scale genetic structure of two carabid species with contrasted levels of habitat specialization. Molecular Ecology 12, 1731-1745.
Chang YC (2007) Population divergence of Père David’s Red–backed Vole (Eothenomys melanogaster) in Taiwan. Master thesis, Department of Life Science, Tunghai University, Taichung, Taiwan.
Chardon JP, Adriaensen F, Matthysen E (2003) Incorporating landscape elements into a connectivity measure: a case study for the Speckled wood butterfly (Pararge aegeria L.). Landscape Ecology 18, 561-573.
Chen PH (2007) Population genetic structure of Red-bellied Tree Squirrel (Callosciurus erythraeus) in agricultural landscapes. Master thesis, Department of Life Science, Tunghai University, Taichung, Taiwan.
Chen XW (1995) Ecological study of small mammals of mountain area in northern Taiwan. Master thesis, Institute of Zoology, National Taiwan University, Taipei, Taiwan.
Coulon A, Cosson JF, Angibault JM (2004) Landscape connectivity influences gene flow in a roe deer population inhabiting a fragmented landscape: an individual-based approach. Molecular Ecology 13, 2841-2850.
Excoffier L, Smouse P, Quattro J (1992) Analysis of molecular variance inferred from metric distance among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131, 479-491.
Finn DS, Theobald DM, Black WC, Poff NL (2006) Spatial population genetic structure and limited dispersal in a Rocky Mountain alpine stream insect. Molecular Ecology 15, 3553-3566.
Francl KE, Glenn TC, Castleberry SB, Ford WM (2008) Genetic relationships of meadow vole (Microtus pennsylvanicus) populations in central Appalachian wetlands. Canadian Journal of Zoology 86, 344-355.
Funk WC, Blouin MS, Corn PS (2005) Population structure of Columbia spotted frogs (Rana luteiventris) is strongly affected by the landscape. Molecular Ecology 14, 483-496.
Gauffre B, Estoup A, Bretagnolle V, Cosson JF (2008) Spatial genetic structure of a small rodent in a heterogeneous landscape. Molecular Ecology 17, 4619-4629.
Graham CH (2001) Factors influencing movement patterns of keel-billed toucans in a fragmented tropical landscape in southern Mexico. Conservation Biology 15, 1789-1798.
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Window 95/98/NT. Nucleic acid symposium series 41, 95-98.
Hartl DL, Clark AG (1997) Principles of Population Genetics, 3rd edn. Sinauer Associates, Sunderland.
Heckel G, Burri R, Fink S, Desmet JF, Excoffier L (2005) Genetic structure and colonization processes in European populations of the common vole, Microtus arvalis. Evolution 59, 2231-2242.
Holderegger R, Wagner HH (2008) Landscape genetics. Bioscience 58, 199-207.
Hsu FH, Lin FJ, Lin YS (2001) Phylogeographic structure of the Formosan wood mouse, Apodemos semotus Thomas. Zoological Studies 40, 91-102.
Kimura M (1983) The Neutral Theory of Molecular Evolution. Cambridge University Press, Cambridge.
Kimura S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: Molecular Evolutionary Genetics Analysis software. Bioinformatics 17, 1244-1245.
Kocher TD, Conroy JA, Mckaye KR, Stauffer JR (1993) Similar morphologies of cichlid fish in Lakes Tanganyika and Malawi are due to convergence. Molecular Phylogenetics and Evolution 2, 158-165.
Koh HS, Lee WJ, Kocher TD (2000) The genetic relationships of two subspecies of striped field mice, Apodemus agrarius coreae and Apodemus agrarius chejuensis. Heredity 85, 30-36.
Koscinski D, Yates AG, Handford P, Lougheed SC (2009) Effects of landscape and history on diversification of a montane, stream-breeding amphibian. Journal of Biogeography 36, 255-265.
Kuo CH (2002) The population genetic structure of Sphenomorphus taiwanensis. Master thesis, Department of Life Science, National Taiwan Normal University, Taipei, Taiwan.
Lee-Yaw JA, Davidson A, McRae BH, Green DM (2009) Do landscape processes predict phylogeographic patterns in the wood frog? Molecular Ecology 18, 1863-1874.
Lee LL (1992) Investigation on rodent species in Taroko National Park. Technical Report, Taroko National Park Headquarters, Construction and Planning Agency, Ministry of the Interior, Hualien, Taiwan.
Lee PF, Ding TS, Geng S, Hsu FH (2004) Breeding bird species richness on gradients of elevation, primary productivity and human disturbance in Taiwan. Journal of Biogeography 31, 307-314.
Lin LK (1989) Inferring the source of small mammals in Taiwan in a view of phylogeography. Symposium of animal phylogeography in Taiwan, page 67-83.
Lin LK, Shiraishi S (1992) Home Range and Microhabitat Utilization in the Formosan Wood Mouse, Apodemus semotus. Journal of the Faculty of Agriculture Kyushu University 37, 13-27.
Lin LK (2005) Phylogeographic study of Père David’s Red–backed Vole (Eothenomys melanogaster) and Taiwan Vole (Microtus kikuchii) I. Technical Report, Forestry Bureau, Council of Agriculture Executive Yuan, Taipei, Taiwan.
Lin YK, Batzli GO (2001a) The effect of interspecific competition on habitat selection by voles: an experimental approach. Canadian Journal of Zoology 79, 110-120.
Lin YK, Batzli GO (2001b) The influence of habitat quality on dispersal, demography, and population dynamics of voles. Ecological Monographs 71, 245-275.
Lin YK, Batzli GO (2004) Movement of voles across habitat boundaries: effects of food and cover. Journal of Mammalogy 85, 216-224.
Lin YS (1990) Relationship between small mammals and botanic environment. Technical Report, Yushan National Park Headquarters, Construction and Planning Agency, Ministry of the Interior, Nantou, Taiwan.
Lin YS (1991) Relationships between fauna, elevation and vegetation in Taroko National Park. Technical Report, Taroko National Park Headquarters, Construction and Planning Agency, Ministry of the Interior, Hualien, Taiwan.
MacArthur RH, Wilson EO (1967) The Theory of Island Biogeography Princeton University Press, Princeton, New Jersey.
Macdonald DW, Johnson DDP (2001) Dispersal in theory and practice: consquence for conservation biology. In: Dispersal (eds. Clobert J, Danchin E, Dhondt AA, Nichols JD), pp. 358-372. Oxford University Press, Oxford, UK.
Macqueen PE, Nicholls JA, Hazlitt SL, Goldizen AW (2008) Gene flow among native bush rat, Rattus fuscipes (Rodentia : Muridae), populations in the fragmented subtropical forests of south-east Queensland. Austral Ecology 33, 585-593.
Manel S, Schwartz MK, Luikart G, Taberlet P (2003) Landscape genetics: combining landscape ecology and population genetics. Trends in Ecology and Evolution 18, 189-197.
McRae BH (2006) Isolation by resistance. Evolution 60, 1551-1561.
Michels E, Cottenie K, Neys L (2001) Geographical and genetic distances among zooplankton populations in a set of interconnected ponds: a plea for using GIS modelling of the effective geographical distance. Molecular Ecology 10, 1929-1938.
Monsen KJ, Blouin MS (2004) Extreme isolation by distance in a montane frog (Rana cascadae). Conservation Genetics 5, 827-835.
Nei M (1987) Molecular Evolutionary Genetics Columbia University Press, New York.
Palmer MA, Allan JD, Butman CA (1996) Dispersal as a regional precess affecting the local dynamics of marine and stream benthic invertebrates. Trends in Ecology and Evolution 11, 322-326.
Pease KM, Freedman AH, Pollinger JP (2009) Landscape genetics of California mule deer (Odocoileus hemionus): the roles of ecological and historica; factors in generating differentiation. Molecular Ecology 18, 1848-1862.
Pfenninger M (2002) Relationship between microspatial population genetric structure and habitat heterogeneity in Pomatias elegans (O.F. Muller 1774) Caenogastropoda, Pomatiasidae). Biological Journal of the Linnean Society, London 76, 565-575.
Posada D, Crandall KA (2001) Intraspecific gene genealogies: trees grafting into networks. Trends in Ecology and Evolution 16, 37-45.
Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145, 1219-1228.
Rousset F (2000) Genetic differentiation between individuals. Journal of Evolutionary Biology 13, 58-62.
Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analysis by the coalescent and other methods. Bioinformatics 19, 2496-2497.
Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. In: Bioinformatics Methods and Protocols: Methods in Molecular Biology. (eds. Krawetz S, Misener S), pp. 365-386. Humana Press, Totowa, NJ.
Rueness EK, Stenseth NC, O'Donoghue M (2003) Ecological and genetic spatial structuring in the Canadian lynx. Nature 425, 69-71.
Slatkin M, and T Maruyama (1975) Influence of gene flow on genetic distance. Amerian Naturalist 109, 597-601.
Slatkin M (1985) Gene flow in natural populations. Annual Review of Ecology and Systematics 16, 393-430.
Spear SF, Peterson CR, Matocq MD, Storfer A (2005) Landscape genetics of the blotched tiger salamander (Ambystoma tigrinum melanostictum). Molecular Ecology 14, 2553-2564.
Storfer A, Murphy MA, Evans JS (2007) Putting the 'landscape' in landscape genetics. Heredity 98, 128-142.
Sumner J, Rousset F, Estoup A, Moritz C (2001) 'Neighbourhood' size, dispersal and density estimates in the prickly forest skink (Gnypetoscincus queenslandiae) using individual genetic and demographic methods. Molecular Ecology 10, 1917-1927.
Suzuki H, Yasuda SP, Sakaizumi M, Wakana S, Motokawa M, Tsuchiya K (2004) Differential geographic patterns of mitochondrial DNA variation in two sympatric species of Japanese wood mice, Apodemus speciosus and A. argenteus. Genes & Genetic Systems 79, 165-176.
Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585-595.
Tao N, Richardson R, Bruno W, Kuiken C (2009) FindModel. Retrieved from Los Alamos National Labrotory website: http://www.hiv.lanl.gov/content/sequence/findmodel/findmodel.html.
Taylor PD, Fahrig L, Henein K, Merriam G (1993) Connectivity is a vital element of landscape structure. Oikos 68, 571-573.
Triant DA, DeWoody JA (2006) Accelerated molecular evolution in Microtus (Rodentia) as assessed via complete mitochondrial genome sequences. Genetica 128, 95-108.
Vigilant L, Stoneking M, Harpending H, Hawkes K, Wilson AC (1991) African populations and the evolution of human mitochondrial DNA. Science 253, 1503-1507.
Vignieri SN (2005) Streams over mountains: influence of riparian connectivity on gene flow in the Pacific jumping mouse (Zapus trinotatus). Molecular Ecology 14, 1925-1937.
Walker RS, Novaro AJ, Branch LC (2007) Functional connectivity defined through cost-distance and genetic analyses: a case study for the rock-dwelling mountain vizcacha (Lagidium viscacia) in Patagonia, Argentina. Landscape Ecology 22, 1303-1314.
Wang Y-H, Yang K-C, Bridgman CL, Lin L-K (2008) Habitat suitability modelling to correlate gene flow with landscape connectivity. Landscape Ecology 23, 989-1000.
Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38, 1358-1370.
Wilkinson GS, Fleming TH (1996) Migration and evolution of lesser long-nosed bats Leptonycteris curasoae, inferred from mitochondrial DNA. Molecular Ecology 5, 329-339.
Wright S (1940) Breeding structure of population in relation to speciation. Amerian Naturalist 74, 232-248.
Wright S (1943) Isolation by distance. Genetics 28, 114-138.
Wu JS (2006) Mating system of Taiwan Vole (Microtus kikuchii): evidence from field data and microsatellite DNA. Master thesis, Department of Life Science, Tunghai University, Taichung, Taiwan.
Wu HY (2002) Study on ecological corridor between Taroko and Shei-Pa National Parks: fauna investigation around YuSheng watershed area. Technical Report, Taroko National Park Headquarters and Shei-Pa National Park Headquarters, Construction and Planning Agency, Ministry of the Interior, Hualien and Miaoli, Taiwan.
Wu HY (2008) Wildlife monitoring in Si-Yuan Saddle area. Technical Report, Shei-Pa National Park Headquarters, Construction and Planning Agency, Ministry of the Interior, Miaoli, Taiwan.
Yu HT (1993) Natural-history of small mammals of subtropical montane areas in central Taiwan. Journal of Zoology 231, 403-422.
Yu HT (1995) Patterns of diversification and genetic population-structure of small mammals in Taiwan. Biological Journal of the Linnean Society 55, 69-89.
Yuan SL, Lin LK, Oshida T (2006) Phylogeography of the mole-shrew (Anourosorex yamashinai) in Taiwan: implications of interglacial refugia in a high-elevation small mammal. Molecular Ecology 15, 2119-2130.
dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/8694-
dc.description.abstract瞭解地景因子對目標物種的族群遺傳結構之影響,是族群生態學中很重要的一環。地景因子包括目標物種分布範圍內的植被類型、海拔高度、地形變化等,它們會影響棲地品質,進而影響個體的分散狀態和播遷,塑造出族群在空間上的遺傳結構變異。根據傳統的距離隔離效應(isolation by distance, IBD) 理論,族群間的遺傳距離會與地理距離成正相關,然而傳統的「直線距離」(Euclidean distance) 往往缺乏生物意義而與遺傳距離相關性不高;而以地景因子所建構出的「最小成本路徑距離」(least cost distance) 可直觀地提供族群遺傳變異更佳的解釋。本研究以台灣高山田鼠 (Microtus kikuchii)和台灣森鼠(Apodemus semotus)兩種小型哺乳動物為目標物種,探討地景因子對族群遺傳結構的影響。研究地點位於雪山山脈與中央山脈北段的思源啞口及兩側,武陵山區及南湖山區一帶。我在此三個樣區採集兩物種組織,以分析粒線體DNA中的D-loop片段得到各族群間的遺傳距離FST值;再利用地理資訊系統(GIS)建立三種不同的地理距離:直線距離、由地形變化或植被類型建構出的最小成本路徑距離,並與遺傳距離做相關分析。結果顯示,台灣森鼠不具族群遺傳結構,而台灣高山田鼠具高度族群遺傳結構,而其遺傳結構與植被類型有顯著正相關。zh_TW
dc.description.abstractLandscape features, including vegetation type, elevation, and topography, can influence the dispersal and distribution of animals, and lead to variation in spatial population genetic structure. According to the isolation-by-distance (IBD) model, the genetic distances among populations can be positively correlated with geographic distances. Recently, researchers have started to use the least-cost-path distance instead of Euclidean distance in examining IBD because of the unrealistic meaning of the latter to organisms. In this thesis, I studied the influences of landscape features on population genetic structure of two rodent species, the Taiwan field vole (Microtus kikuchii) and the Formosan field mouse (Apodemus semotus Thomas) in central Taiwan. Through amplifying the D-loop sequence in mtDNA from animal tissues from 6~8 populations of each species, I computed the genetic distance among populations, the FST value. I calculated the geographic distances under three models: Euclidean distance and two least-cost-path distances based on topography or vegetation type, using geographic information system (GIS). I then analyzed the correlation between genetic distance and the geographic distances conducted from the three models. The results showed that there was no population genetic structure among Apodemus semotus, yet a strong genetic structure was present among Microtus kikuchii populations, and significantly positively correlated with vegetation type.en
dc.description.provenanceMade available in DSpace on 2021-05-20T19:59:50Z (GMT). No. of bitstreams: 1
ntu-99-R95b44002-1.pdf: 823579 bytes, checksum: c8ba53fe5b40be40016f49f2d4a74086 (MD5)
Previous issue date: 2010
en
dc.description.tableofcontents致謝 I
中文摘要 II
Abstract III
Contents IV
Contents of Tables V
Contents of Figures VI
Contents of Appendices VII
Introduction 1
Material and Methods 8
1. Sample Collection 8
2. Molecular Methods 9
3. Population Genetic Analyses 11
4. Landscape Genetic Analyses 13
Results 16
1. Data Description 16
2. Population Genetic Analyses 17
3. Landscape Genetic Analyses 21
Discussion 23
1. Genetic Diversity 23
2. Population Genetic Structure 23
3. Effect of Landscape Features on Population Genetic Structure 28
4. The unisex information provided by mtDNA genome 30
Reference 32
Table 41
Figure 54
Appendix 64
dc.language.isoen
dc.title臺灣中部山區地景因子對台灣高山田鼠(Microtus kikuchii)和台灣森鼠(Apodemus semotus)族群遺傳結構之影響zh_TW
dc.titleThe influence of landscape features on population genetic structure of Taiwan vole (Microtus kikuchii) and Formosan mouse (Apodemus semotus) in central Taiwanen
dc.typeThesis
dc.date.schoolyear98-1
dc.description.degree碩士
dc.contributor.oralexamcommittee于宏燦(Hon-Tsen Yu),林良恭(Liang-Kong Lin),許富雄(Fu-Hsiung Hsu)
dc.subject.keyword族群遺傳結構,地景遺傳學,距離隔離,最小成本模式,台灣高山田鼠,台灣森鼠,zh_TW
dc.subject.keywordPopulation genetic structure,Landscape genetics,Isolation by distance,least cost model,Microtus kikuchii,Apodemus semotus,en
dc.relation.page71
dc.rights.note同意授權(全球公開)
dc.date.accepted2010-02-22
dc.contributor.author-college生命科學院zh_TW
dc.contributor.author-dept生態學與演化生物學研究所zh_TW
Appears in Collections:生態學與演化生物學研究所

Files in This Item:
File SizeFormat 
ntu-99-1.pdf804.28 kBAdobe PDFView/Open
Show simple item record


Items in DSpace are protected by copyright, with all rights reserved, unless otherwise indicated.

社群連結
聯絡資訊
10617臺北市大安區羅斯福路四段1號
No.1 Sec.4, Roosevelt Rd., Taipei, Taiwan, R.O.C. 106
Tel: (02)33662353
Email: ntuetds@ntu.edu.tw
意見箱
相關連結
館藏目錄
國內圖書館整合查詢 MetaCat
臺大學術典藏 NTU Scholars
臺大圖書館數位典藏館
本站聲明
© NTU Library All Rights Reserved