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  1. NTU Theses and Dissertations Repository
  2. 生命科學院
  3. 生態學與演化生物學研究所
Please use this identifier to cite or link to this item: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/66491
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dc.contributor.advisor胡哲明
dc.contributor.authorHsiang-Hsuan Kungen
dc.contributor.author孔祥璿zh_TW
dc.date.accessioned2021-06-17T00:38:48Z-
dc.date.available2017-02-16
dc.date.copyright2012-02-16
dc.date.issued2012
dc.date.submitted2012-01-30
dc.identifier.citation方精雲, 費松林, 趙坤, 樊擁軍, 莊東紅, 吳鳴翔 (2000) 浙江水青岡屬植物的解剖特徵及其分類學意義. 北京大學學報(自然科學版)36(4): 509-516
王亞男, 林建良 (2002) 利用RAPD分子標誌研究台灣山毛櫸之族群變異. 中華林學季刊 35(3): 265-272
吉成均, 沈海花, 方精雲, 謝長富, 樊擁軍 (2002) 基於RAPD標記的我國水青岡屬植物的分類研究. 北京大學學報(自然科學版)32(6): 817-822
何俊, 汪正祥, 雷耘, 李中強, 張柳, 滿金山 (2008) 七姊妹山自然保護區臺灣水青岡林群落學特徵研究. 華中師範大學學報(自然科學版)42(2): 273-277
呂金誠, 邱清安, 歐辰雄 (1998a) 插天山自然保留區植群之研究. 中興大學實驗林研究彙刊 20(1): 57-80
呂金誠, 歐辰雄, 邱清安 (1998b) 插天山自然保留區植群研究(二)臺灣山毛櫸之族群組成. 中興大學實驗林研究季刊 20(2): 79-91
李建強 (1996) 山毛櫸科的起源和地理分佈. 植物分類學報 34(4): 376-379
李建強, 王恆昌, 李曉東, 李新傳 (2003) 基於細胞核rDNA ITS片段的水青岡屬的分子系統發育. 武漢植物學研究 21(1): 31-36
李騰飛, 李俊清 (2008) 中國水青岡起源分佈、更新以及遺傳多樣性. 中國農學通報 24: 185-191
金平亮三 (1936) 台灣樹木誌. 97-102. 台灣總督府中央研究所林業部
柳榗 (1968) 臺灣產殼斗科植物地理之研究. 臺灣省林業試驗所報告第165號
洪必恭, 安樹青 (1993) 中國水青岡屬植物地理分佈初探. 植物學報 35(3): 229-233
徐國士, 呂勝由 (1994) 臺灣自然大系12:臺灣的稀有植物. 54-55. 渡假出版社.
張永田, 黃成就(1988)殼斗科植物摘錄(Ⅱ) 水青岡屬 Fagus L.. 植物分類學報 26 (2) :111-119
陳子英 (2004) 銅山地區山毛櫸林植物資源調查(1/2). 行政院農業委員會林務局保育研究系列第92-7號
陳子英 (2005) 銅山地區山毛櫸林植物資源調查(2/2). 行政院農業委員會林務局保育研究系列第93-6號
陳子英, 謝長富, 毛俊傑, 賴玉菁, 林世宗, 胡哲明, 徐堉峰, 楊正釧, 孔祥璿, 林哲榮, 陳品邑 (2011) 深山孑遺的夏綠林─台灣水青岡. 未發表
曾千育, 黃星凡 (2009) 臺灣三角楓之學名訂正. 國立臺灣博物館學刊 62(1): 35-44
黃立彥 (2000) 拉拉山臺灣山毛櫸林植群生態與天然更新之研究. 國立中興大學森林學系碩士論文
熊莉軍, 郭柯, 趙常明, 劉長成(2007)四川大巴山巴山水青岡群落物種多樣性特徵. 生物多樣性 15(4):400-407
劉棠瑞, 蘇鴻傑 (1972) 北插天山夏綠林群落之研究. 省立博物館科學年刊 15: 1-14
歐辰雄, 呂金誠 (1999) 插天山自然保留區台灣水青岡天然更新與繁殖之可行性研究. 農委會林務局保育研究系列第88-1號
歐辰雄, 呂金誠 (2000) 插天山自然保留區台灣水青岡天然更新與繁殖之可行性研究(II). 農委會林務局保育研究系列第89-5號
歐辰雄, 呂金誠, 邱清安, 王志強, 張美瓊, 曾喜育 (1995) 插天山自然保留區植被調查研究(Ⅰ). 臺灣省農林廳林務局保育研究系列84-02號
歐辰雄, 呂金誠, 邱清安, 王志強, 張美瓊, 曾喜育 (1996) 插天山自然保留區植被調查研究(Ⅱ). 臺灣省農林廳林務局保育研究系列85-08號
謝長富, 湯惟新, 林義方, 林雲珍, 陳尊賢, 林光清, 張仲光 (1987) 自然保護區生態基準資料庫之建立(二). 行政院農業委員會

Akkaya MS, Bhagwat AA, Cregan PB (1992) Length polymorphisms of simple sequence repeat DNA in soybean. Genetics 132: 1131-1139
Asuka Y, Tani N, Tsumura Y, Tomaru N (2004) Development and characterization of microsatellite markers for Fagus crenata Blume. Molecular Ecology Notes 4: 101-103
Baker AJ (2000) Molecular methods in ecology. Blackwell Science, Malden, MA
Balloux F, Lugon-Moulin N (2002) The estimation of population differentiation with microsatellite markers. Molecular Ecology 11: 155-165
Chakraborty R, Jin L (1993) Determination of relatedness between individuals using DNA fingerprinting. Human Biology 65: 875-895
Cao K.-F., Peters R. , Oldeman R. A. A. (1995) Climatic range and distribution of Chinese Fagus species. Journal of Vegetation Science 6: 317–324
Comps B, Barriere G, Merzeau D, Letouzey J (1987) Alloenzyme variability of beeches in the Atlantic range of Western Europe. Canadian Journal of Forest Research 17: 1043-1049
Comps B, Thiebaut B, Paule L, Merzeau D, Letouzey J (1990) Allozymic variability in beechwoods (Fagus sylvatica L.) over central Europe: spatial differentiation among and within populations. Heredity 65: 407-417
Demesure B, Comps B, Petit RJ (1996) Chloroplast DNA Phylogeography of the Common Beech (Fagus sylvatica L.) in Europe. Evolution 50: 2515-2520
Denk T, Grimm GW, Hemleben V (2005) Patterns of molecular and morphological differentiation in Fagus (Fagaceae): phylogenetic implications. American Journal of Botany 92: 1006-1016
Dirlewanger, Cosson, Tavaud, Aranzana, Poizat, Zanetto, Arus, Laigret (2002) Development of microsatellite markers in peach [Prunus persica (L.) Batsch] and their use in genetic diversity analysis in peach and sweet cherry (Prunus avium L.). Theoretical and Applied Genetics 105: 127-138
Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11-15
DvoŘAK J, Zhang HB (1992) Application of molecular tools for study of the phylogeny of diploid and polyploid taxa in Triticeae. Hereditas 116: 37-42
Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molocelar Ecology 14: 2611-2620
Fang J, Lechowicz MJ (2006) Climatic limits for the present distribution of beech (Fagus L.) species in the world. Journal of Biogeography 33: 1804-1819
Fujii N, Tomaru N, Okuyama K, Koike T, Mikami T, Ueda K (2002) Chloroplast DNA phylogeography of Fagus crenata (Fagaceae) in Japan. Plant Systematics and Evolution 232: 21-33
Felsenstein J (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791
Goudet J (2002) FSTAT, a program to estimate and test gene diversities and fixation indices. Version 2.9.3.2. Available from http://www2.unil.ch/popgen/softwares/fstat.htm
Hillis DM, Moritz C (1990) Molecular Systematics. Sinauer Associates Inc., Massachusetts, U.S.A.
Hiraoka K, Tomaru N (2009a) Genetic divergence in nuclear genomes between populations of Fagus crenata along the Japan Sea and Pacific sides of Japan. Journal of Plant Research 122: 269-282
Hiraoka K, Tomaru N (2009b) Population genetic structure of Fagus japonica revealed by nuclear microsatellite markers. International Journal of Plant Sciences 170: 748-758
Hodges SA, Arnold ML (1994) Columbines: a geographically widespread species flock. Proceedings of the National Academy of Sciences 91: 5129-5132
Hsieh CF (1989) Structure and floristic composition of the beech forest in Taiwan. Taiwania 34(1): 28-44
Huang CC, Chang YT, Bartholomew B (1999) Fagaceae. Flora of China 4: 314-400. Sciences Press, Beijing & Missouri Botanical Garden Press, St. Louis.
Huijser P, Hennig W, Dijkhof R (1987) Poly(dC—dA/dG—dT) repeats in the Drosophila genome: a key function for dosage compensation and position effects? Chromosoma 95: 209-215
Jin L, Chakraborty R (1993) Estimation of genetic distance and coefficient of gene diversity from single-probe multilocus DNA fingerprinting data. Molecular Biology and Evolution 11(1):120-127
Kato S, Koike T, Lei TT, Hsieh C-F, Ueda K, Mikami T (2000) Analysis of mitochondrial DNA of an endangered beech species, Fagus hayatae Palibin ex Hayata. New Forests 19: 109-114
King RA, Ferris C (1998) Chloroplast DNA phylogeography of Alnus glutinosa (L.) Gaertn. Molecular Ecology 7: 1151-1161
Koch JL, Carey DW, Mason. ME (2010) Use of microsatellite markers in an American beech (Fagus grandifolia) population and paternity testing. Silvae Genetica 59: 62-68
Langella O (1999) Populations 1.2.30: a population genetic software. CNRS UPR9034. Available from http://bioinformatics.org/~tryphon/populations/
Leonardi S, Menozzi P (1996) Spatial structure of genetic variability in natural stands of Fagus sylvatica L. (beech) in Italy. Heredity 77: 359-368
Liew P-M, Huang S-Y (1994) Pollen analysis and their paleoclimatic implication in the middle Pleistocene lake deposits of the Ilan district, northeastern Taiwan. Journal of the Geological Society of China 37(1): 115-124
Liew PM, Shen CF, Huang SY (1994) Middle Pleistocene distribution of the genus Fagus Tourn. ex L. (Fagaceae) in Taiwan. Journal of the Geological Society of China 37(4): 549-560
Lu SY, Pan FJ (1998) Fagus hayatae. In: IUCN 2011. IUCN red List of threatened Species. Version 2011.2. Available from http://www.iucnredlist.org/
Manos P, Steele K (1997) Phylogenetic analyses of 'higher' Hamamelididae based on plastid sequence data. American Journal of Botany 84: 1407
Manos PS, Stanford AM (2001) The historical biogeography of Fagaceae: Tracking the Tertiary history of temperate and subtropical forests of the northern hemisphere. International Journal of Plant Sciences 162: S77-S93
Manos Paul S, Zhou Z-K, Cannon Charles H (2001) Systematics of Fagaceae: Phylogenetic tests of reproductive trait evolution. International Journal of Plant Sciences 162: 1361-1379
Mogensen HL (1996) The hows and whys of cytoplasmic inheritance in seed plants. American Journal of Botany 83: 383-404
O'Reilly P, Wright JM (1995) The evolving technology of DNA fingerprinting and its application to fisheries and aquaculture. Journal of Fish Biology 47: 29-55
Okaura T, Harada K (2002) Phylogeographical structure revealed by chloroplast DNA variation in Japanese Beech (Fagus crenata Blume). Heredity 88: 322-329
Park SDE (2001) Trypanotolerance in West African cattle and the population genetic effects of selection. PhD. thesis. University of Dublin. Available from http://animalgenomics.ucd.ie/sdepark/ms-toolkit/
Powell W, Machray GC, Provan J (1996) Polymorphism revealed by simple sequence repeats. Trends in Plant Science 1: 215-222
Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959
Pritchard JK, Wen W (2003) Documentation for STRUCTURE software: Version 2. Available from http://pritch.bsd.uchicago.edu/structure.html.
Ramsay L, Macaulay M, Ivanissevich SD, K KM, Cardle L, Fuller J, Edwards KJ, Tuvesson S, Morgante M, Massari A, Marmiroli N, Sjakste T, Ganal M, Powell W, Waugh R (2000) A simple sequence repeat-based linkage map of barley. Genetics 156: 1997-2005
Raymond M, Rousset F (1995a) An exact test for population differentiation. Evolution 49: 1280-1283
Raymond M, Rousset F (1995b) GENEPOP (Version 1.2): Population genetics software for exact tests and ecumenicism. Journal of Heredity 86: 248-249
Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145: 1219-1228
Rowden A, Robertson A, Allnutt T, Heredia S, Williams-Linera G, Newton AC (2004) Conservation genetics of Mexican beech, Fagus grandifolia var. mexicana. Conservation Genetics 5: 475-484
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4: 406-425
Sander T, Konig S, Rothe GM, Jansen A, Weisgerber H (2000) Genetic variation of European beech (Fagus sylvatica L.) along an altitudinal transect at mount Vogelsberg in Hesse, Germany. Molecular Ecology 9: 1349-1361
Scalfi M, Troggio M, Piovani P, Leonardi S, Magnaschi G, Vendramin GG, Menozzi P (2004) A RAPD, AFLP and SSR linkage map, and QTL analysis in European beech (Fagus sylvatica L.). Theoretical and Applied Genetics 108: 433-441
Schaffner W, Kunz G, Daetwyler H, Telford J, Smith HO, Birnstiel ML (1978) Genes and spacers of cloned sea urchin histone DNA analyzed by sequencing. Cell 14: 655-671
Shen C-F (1992) A monograph of the genus Fagus Tourn. ex L. (Fagaceae). Dissertation. The City University of New York, New York.
Shen C-F, Boufford DE (1988) Fagus hayatae (Fagaceae) - a remarkable new example of disjunction between Taiwan and central China. Journal of Japanese Botany 63(3): 96-101
Soltis DE, Gitzendanner MA, Strenge DD, Soltis PS (1997) Chloroplast DNA intraspecific phylogeography of plants from the Pacific Northwest of North America. Plant Systematics and Evolution 206: 353-373
Taberlet P, Gielly L, Pautou G, Bouvet J (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109
Takahashi M, Tsumura Y, Nakamura T, Uchida K, Ohba K (1994) Allozyme variation of Fagus crenata in northeastern Japan. Canadian Journal of Forest Research 24: 1071-1074
Tanaka K, Tsumura Y, Nakamura T (1999) Development and polymorphism of microsatellite markers for Fagus crenata and the closely related species, F. japonica. Theoretical and Applied Genetics 99: 11-15
Tomaru N, Mitsutsuji T, Takahashi M, Tsumura Y, Uchida K, Ohba K (1997) Genetic diversity in Fagus crenata (Japanese beech): influence of the distributional shift during the late-Quaternary. Heredity 78: 241-251
Tomaru N, Takahashi M, Tsumura Y, Ohba K (1998) Intraspecific variation and phylogeographic patterns of Fagus crenata (Fagaceae) mitochondrial DNA. American Journal of Botany 85: 629
Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370
Wolf PG, Murray RA, Sipes SD (1997) Species-independent, geographical structuring of chloroplast DNA haplotypes in a montane herb Ipomopsis (Polemoniaceae). Molecular Ecology 6: 283-291
Wright S (1943) ISOLATION BY DISTANCE. Genetics 28: 114-138
Wright S (1978) Evolution and the genetics of population. Vol. 4. The University of Chicago Press, Chicago
Wu K-S, Tanksley SD (1993) Abundance, polymorphism and genetic mapping of microsatellites in rice. Molecular and General Genetics 241: 225-235
dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/66491-
dc.description.abstract台灣水青岡(Fagus hayatae Palib.)是法定珍稀植物之一,在台灣目前主要分佈在台灣地區的插天山自然保留區、銅山地區、及幾處新發現的單獨山頭族群,此外於大陸四川、湖北、浙江等地也有零星分佈。本研究係對此具有滅絕危機的物種進行族群遺傳研究,檢測其族群間葉綠體DNA兩處片段trnL–F 與 rbcL–atpB之核苷酸變異度;以及挑選三組用於圓齒水青岡(Fagus crenata)之微衛星DNA引子對來應用於增幅台灣水青岡之微衛星DNA片段,對台灣九處分布族群以及大陸三處族群進行分析。研究結果顯示台灣水青岡葉綠體標記序列之變異度相當低,且於中國大陸之近緣分類群相似,但雪山山脈之族群(北插天山、羅培山、拉拉山、鳥嘴山、阿玉山)和中央山脈族群(蘭崁山、大白山、太平山山毛櫸步道-銅山)二者之間已有分化情形;微衛星分析之結果則顯示台灣各族群間分化度較低,大陸三處族群分化度較高,並以浙江族群最為顯著,但由貝氏族群遺傳結構分析則顯示,台灣族群與大陸三處族群,仍全部應屬於同一類分群。本研究之結果肯定微衛星序列之分析可提供較多的遺傳資訊,有助於釐清台灣水青岡之族群遺傳結構,未來可更加利用於保育生物學的工作上。zh_TW
dc.description.abstractFagus hayatae Palib., a rare and statutory-conserved plant in Taiwan, is distributed in Chatienshan Nature Reserve, Tongshan area, and few new single mountain areas. It can also be found in Sichun province, Hubei province, and Zhejiang province in China. A population genetics research on this endangered species was conducted by using chloroplast trnL–F and rbcL–atpB regions; three microsatellite markers developed for Fagus crenata were also examined in Fagus hayatae on the nine populations in Taiwan and three populations in China. Results showed that a low variation in Taiwan's populations using chloroplast markers, and a close relationship with the related taxa from China. Results also indicated a clear divergence of the populations from Syue Mountain (Beicha, Loupei, Lala, Niauzui, and Ayu) and Central Mountains (Lenkan, Dabai, Taipin Beech Trail, and Tongsan). By conducting microsatellite analysis, populations in Taiwan exhibited low level of genetic variation, while populations in China had higher level of genetic variation, especially for Zhejian’s population. Nevertheless, results of Bayesian clustering analysis suggested that populations in Taiwan and China should be considered as a single genetically distinct group. The results from microsatellite data provide more genetic information and therefore can be a great resource for further population genetics studies, hopefully provide applications to conservation biology of Fagus hayatae in Taiwan.en
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dc.description.tableofcontents目錄
壹、 前言 1
一、 水青岡屬植物之研究 1
1. 水青岡屬植物之分佈 1
2. 水青岡屬植物之遺傳研究 2
二、 台灣水青岡之研究 4
1. 台灣水青岡介紹 4
2. 台灣水青岡的遺傳研究 7
三、 分子標記介紹 9
1. 葉綠體基因間序列 9
2. 核微衛星序列(nuclear microsatellite DNA sequences) 10
四、 研究目的 11
貳、 研究方法 12
一、 樣區採集 12
二、 DNA抽取 14
三、 葉綠體片段分析 15
1. PCR擴增反應與產物純化 15
2. 基因定序與產物確認 17
3. 核酸序列分析 17
四、 核微衛星基因片段分析 18
1. PCR擴增反應與產物片段檢測 18
2. 資料分析 19
參、 結果 23
一、 葉綠體片段分析 23
1. trnL-trnF基因間片段 23
2. rbcL-atpBE基因間片段 24
二、 核微衛星基因片段分析 26
1. 族群之遺傳結構 26
2. 微衛星基因座變異分析 28
3. 族群間之分化指數 29
4. 距離隔離效應(isolation by distance, IBD) 檢測 31
5. 親緣關係樹之建構 33
6. 貝氏族群遺傳結構分析 35
肆、 討論 37
一、 葉綠體基因間序列變異性 37
二、 核微衛星序列變異性 38
1. 異型合子比例 38
2. 族群分化程度 39
3. 空間遺傳結構不符合距離隔離效應(isolation by distance, IBD) 40
三、 族群遺傳結構 41
四、 遺傳變異與保育 43
伍、 結論 44
陸、 參考文獻 45
dc.language.isozh-TW
dc.title以葉綠體及核微衛星DNA標記探究台灣水青岡之族群遺傳結構zh_TW
dc.titlePopulation genetic structure of Fagus hayatae Palib. based on chloroplast and nuclear microsatellite markersen
dc.typeThesis
dc.date.schoolyear100-1
dc.description.degree碩士
dc.contributor.oralexamcommittee陳子英,鍾國芳
dc.subject.keyword台灣水青岡,族群遺傳結構,葉綠體DNA,微衛星序列,zh_TW
dc.subject.keywordFagus hayatae,genetic structure,cpDNA,microsatellite,en
dc.relation.page53
dc.rights.note有償授權
dc.date.accepted2012-01-30
dc.contributor.author-college生命科學院zh_TW
dc.contributor.author-dept生態學與演化生物學研究所zh_TW
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