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  1. NTU Theses and Dissertations Repository
  2. 電機資訊學院
  3. 電機工程學系
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/25680
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor莊曜宇
dc.contributor.authorFeng-cheng Wu 吳豐成en
dc.contributor.author吳豐成zh_TW
dc.date.accessioned2021-06-08T06:24:28Z-
dc.date.copyright2006-07-31
dc.date.issued2006
dc.date.submitted2006-07-29
dc.identifier.citation參考文獻
1. Robin H. Liu,Jianing Yang, Maciej Z. Pindera,Mahesh Athavale and Piotr
Grodzinski,“Hybridization Enhancement Using Cavitation Microstreaming” ,Anal. Chem.2003, 75,1911-1917
2. Tecan HS Hybridization station
http://www.tecan.com/platform/apps/product/index.asp?MenuID=1791&ID=1840&Menu=1&Item=21.1.2
3. Nils B. Adey, Ming Lei, Mike T. Howard,John D. Jensen,Debbie A. Mayo, Darin L. Butel,Steve C. Coffin, Tom C. Moyer,Devan E. Slade,Mark K. Spute, Angela M. Hancock,George T. Eisenhoffer, Brian K. Dalley,§and Michael R. McNeely,“Gains in Sensitivity with a Device that Mixes Microarray Hybridization Solution in a 25-μm-Thick Chamber”,Analytical Chemistry, Vol. 74, No. 24, December 15, 2002
4. Andreas Toegl, Roland Kirchner, Christoph Gauer, and Achim Wixforth,“Enhancing Results of Microarray Hybridizations Through Microagitation”
Journal Of Biomolecular Techniques, Vol 14, Issue 3, 2003
5. 杏輝醫藥雜誌 第28期 “基因時代產業新主流---生物晶片簡介”
6. 陳健尉 “基因微陣列之簡介及其應用” 生物醫學報導 2
http://www.cbt.ntu.edu.tw/General/BioMed/Biomed2/Biomed2-7.htm
7. HuaSu,1 Nan Hu,1 Joanna Shih, Ying Hu, Quan-Hong Wang, Eric Y. Chuang, Mark J. Roth, ChaoyuWang, Alisa M. Goldstein, Ti Ding, Sanford M. Dawsey, Carol Giffen, Michael R. Emmert-Buck, and Philip R. Tay,“Gene Expression Analysis of Esophageal SquamousCell Carcinoma Reveals Consistent Molecular Profiles Related to a Family History of Upper Gastrointestinal Cancer”,CANCER RESEARCH 63, 3872–3876, July 15, 2003
8. Wataru Yasui, Naohide Oue, Reiko Ito, Kazuya Kuraoka and Hirofumi ,“Nakayama Search for new biomarkers of gastric cancer through serial analysis of gene expression and its clinical implications “,Cancer Science Volume 95 Page 385 - May 2004
9. Golub, T.R., Slonim, D.K., Tamayo, P., Huard, C., Gaasenbeek, M., Mesirov, J.P., Coller, H., Loh, M.L., Downing, J.R., Caligiuri, M.A., Bloomfield, C.D. and Lander, E.S. ,“Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. ”,Science, 286, 531-537. 1999
10. Giulio Maria Pasinetti ,“Mini-Review:Use of cDNAMicroarray in the Search for Molecular Markers nvolved in the Onset of Alzheimer’s Disease Dementia”,Journal of Neuroscience Research 65:471–476 (2001)
11. James C. H. Hardwick, Marije van Santen, Gijs R. van den Brink, Sander J. H. van Deventer and Maikel P. Peppelenbosch ,“DNA array analysis of the effects of aspirin on colon cancer cells: involvement of Rac1”,Carcinogenesis, Vol. 25, No. 7, 1293-1298, July 2004
12. Mark Schena “Microarray ANALYSIS”page 149 , John Wiley & Sons,Inc.
13. Andrei Blasko, Robert O. Dempcy, Elvira E. Minyat, and Thomas C. Bruice “Association of Short-Strand DNA Oligomers with Guanidinium-Linked Nucleosides. A Kinetic and Thermodynamic Study”,J. Am. Chem. Soc. 1996, 118, 7892-7899
14. Stillman BA, Tonkinson JL,“Expression microarray hybridization kinetics depend on length of the immobilized DNA but are independent of immobilization substrate.”,Anal Biochem 2001, 295:149-157
15. Chan, V.; Graves, D. J.; Fortina, P.; McKenzie, S. E. “Adsorption and Surface Diffusion of DNA Oligonucleotides at Liquid/Solid Interfaces” Langmuir; (Research Article); 1997; 13(2); 320-329
16. David G. Myszka, Xiaoyi He,Micah Dembo, Thomas A. Morton,and Byron Goldstein “Extending the Range of Rate Constants Available from BIACORE: Interpreting Mass Transport-Influenced Binding Data” Biophys J, August 1998, p. 583-594, Vol. 75, No. 2
17. Tamra Mason , Angel R. Pineda , Carla Wofsy ,Byron Goldstein “Effective rate models for the analysis of transport-dependent biosensor data”Mathematical Biosciences 159 (1999) 123-44
18. Cheng-Wey Wei1, Ji-Yen Cheng1, Chih-Ting Huang1, Meng-Hua Yen1and Tai-Horng Young,“Using a microfluidic device for 1 ul DNA microarray hybridization in 500s” ,Nucleic Acids Research, 2005, Vol. 33, No. 8
19. Samuel A. Elder ,“Cavitation Microstreaming” ,J. Acoust. Soc. Am. 1959, 31, 54-62.
20. Robin Hui Liu, Ralf Lenigk, Roberta L. Druyor-Sanchez, Jianing Yang, and Piotr Grodzinski,, “Bubble-induced acoustic micromixing“,Lab Chip, 2002, 2, 151–157
21. Michael B. Eisen and Patrick O. Brown,“DNA Arrays for Analysis of Gene Expression”,Methods in enzymology ,vol 303

22. David J. Duggan, Michael Bittner, Yidong Chen, Paul Meltzer & Jeffrey M. Trent,“Expression profiling using cDNA microarrays”,nature genetics supplement • volume 21 • january 1999
23. MAPs (Microarray Analysis Platform & System) http://maps.cgm.ntu.edu.tw/
dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/25680-
dc.description.abstract論文摘要
在分子生物學的研究中,基因微陣列晶片是一項具前瞻性的分析技術,其優點在於可以同時準確的偵測數千至數萬點基因的表現量,大幅地縮短篩選有興趣的目標基因所須之時間;然而,在進行傳統的microarray雜合反應,標的物溶液主要是靠著擴散作用來跟探針鍵結,是一項非常耗時的處理步驟。
有鑑於此,在本研究中,使用微聲流效應來加速液體的混合,進而增加雜合的反應效率,縮短雜合所需的時間,並使用此效應來建構一台新型的生物晶片雜合系統。所架設的雜合系統分為三大系統,微聲流系統產生微聲流用來使標的物溶液混和,溫控系統使雜合的溫度維持在42℃,控制系統控制微聲流系統及溫控系統。此系統的主要優點為所使用的儀器簡單,架設容易且架設經費低廉。然而,於校能驗證的相關實驗中,卻不能達到本論文所預期。因此,於提高雜合效率方面仍然需要做進一步的改善。
zh_TW
dc.description.abstractAbstract
DNA microarray technology is one of the most promising analytical tools in molecular biology. The advantage of DNA microarray is that it allows parallel analysis of gene expression of hundreds to thousands of genes at the same time. Therefore, it can greatly reduce time in analyzing. However, conventional DNA microarray hybridization relies on diffusion of target to surface-bound probes, and thus is a rate-limited process.
In this study, I use cavitation microstreaming to construct a new microarray hybridization station in order to accelerate the mix of target solution、enhance the hybridization efficiency and reduce the hybridization time.
The hybridization station includes cavitation microstreaming system、thermocontrol system and control system. Cavitation microstreaming system induces cavitation microstreaming in order to mixing up the target solution. Thermocontrol system maintains the hybridization temperature in 42℃. Control system control cavitation microstreaming system and thermocontrol system.
This station has many advantages including a simple apparatus, ease of implementation and low cost. However, it didn’t reach my expectancy when testing the hybridization efficiency. So, this station needs further improvement in enhancing the hybridization efficiency.
en
dc.description.provenanceMade available in DSpace on 2021-06-08T06:24:28Z (GMT). No. of bitstreams: 1
ntu-95-R93921121-1.pdf: 1216046 bytes, checksum: 0db51f90e808d5d009e839b68fb8781a (MD5)
Previous issue date: 2006
en
dc.description.tableofcontents目 錄
致謝 II
摘要 III
Abstract IV
目錄 VI
圖目錄 VIII

第一章 緒論 1
1-1 、研究動機 1 1-2 、研究目的 2 1-3 、研究架構 2
第二章 文獻探討 4 2-1 、microarray 4 2-1.1、microarray 簡介 4 2-1.2、microarray 原理 6 2-2、影響雜合效率之因素 7
2-3、產生對流的方法 9
2-4、微聲流效應 10
第三章 雜合系統之使用材料與開發步驟 12
3-1 、系統硬體分析設計 12 3-2 、各單元使用材料及設計 13 3-2.1、微處理器單元 14 3-2.2、顯示器單元 16 3-2.3、鍵盤單元 17
3-2.4、方波驅動單元 17
3-2.5、溫度控制單元 19
3-2.6、chamber單元 21
3-2.7、微聲流chamber單元 21
3-3 、控制系統程式之撰寫 23
3-3.1、控制系統程式開發流程 24
3-2.1、控制系統程式運作流程 25
3-4 、雜合系統整合及製作 28
第四章 實驗方法與材料 30 4-1、Microarray製作及處理流程 30
4-2、觀察液體流動 32 4-3、HSPC microarray 33
4-4、Human cDNA microarray 35
第五章 實驗結果與討論 37 5-1、微聲流相關實驗 37 5-1.1、測試微聲流效應是否會使液體產生流動 37 5-1.2、決定孔洞大小及輸入至蜂鳴片電壓參數 38 5-1.3、兩點孔洞間液體的流動情形 39
5-1.4、決定孔洞間距 40
5-1.5、測試是否聲波會對DNA造成傷害 41
5-1.6、微聲流相關實驗討論 42
5-2. 效能驗證相關實驗 42 5-2.1、測量雜合效率時間曲線圖 42 5-2.2、體積降低,測量雜合效率 45 5-2.3、使用傳統方法驗證HSPC microarray的雜合效率 47 5-2.4、使用 Human cDNA microarray驗證系統雜合效率 48 5-2.5、效能驗證相關實驗討論 55
第六章 總結及未來工作 56
參考文獻 57
dc.language.isozh-TW
dc.subject雜合zh_TW
dc.subject微聲流zh_TW
dc.subject生物晶片zh_TW
dc.subjectmicroarrayen
dc.subjectcavitition microstreamingen
dc.subjecthybridizationen
dc.title利用微聲流效應建構新型生物晶片之雜合系統zh_TW
dc.titleA New Microarray Hybridization Station
by Using Cavitation Microstreaming
en
dc.typeThesis
dc.date.schoolyear94-2
dc.description.degree碩士
dc.contributor.oralexamcommittee白果能,蔡孟勳,王鵬堯
dc.subject.keyword微聲流,生物晶片,雜合,zh_TW
dc.subject.keywordcavitition microstreaming,microarray,hybridization,en
dc.relation.page59
dc.rights.note未授權
dc.date.accepted2006-07-30
dc.contributor.author-college電機資訊學院zh_TW
dc.contributor.author-dept電機工程學研究所zh_TW
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