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完整後設資料紀錄
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dc.contributor.advisor李芳仁zh_TW
dc.contributor.advisorFang-Jen Leeen
dc.contributor.author蔡佩娟zh_TW
dc.contributor.authorPei-Juan Caien
dc.date.accessioned2025-09-22T16:06:00Z-
dc.date.available2025-09-23-
dc.date.copyright2025-09-22-
dc.date.issued2025-
dc.date.submitted2025-07-22-
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dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/99946-
dc.description.abstract小GTPase坐落在高基氏體上,是作為調控細胞內蛋白質運輸的重要蛋白。小GTPase的活性受到鳥嘌呤核苷酸交換因子(Guanine nucleotide exchange factors, GEFs)以及GTPase活化蛋白(GTPase activating protein, GAP)的調控。在發酵酵母(Saccharomyces Cerevisiae)中,腺嘌呤核苷二磷酸核醣化因子相似蛋白1 (Arl1)是個在細胞壓力下,對於囊泡的逆向運輸扮演重要角色的小GTPase。目前已知Arl1的活性受到GEF蛋白Syt1以及GAP蛋白Gcs1的調控。活化的Arl1會招募高基氏體蛋白(Golgin) Imh1到高基氏體、調控糖基磷脂酰肌醇锚定蛋白(GPI-anchor protein) Gas1的運輸以及幫助衔接蛋白(adaptor protein) Gga2的運輸。在過去的研究中,我們發現在內質網壓力中,Arl1會被高度活化並招募更多的Imh1到高基氏體,同時,Imh1會被磷酸化並共同調控SNARE蛋白Snc1的逆向運輸。而在本篇研究中,我們更進一步發現,在缺乏糖分的情況下,Imh1會被磷酸化並促使其離開高基氏體,而這樣的磷酸化調控參與在細胞維持高基氏體恆定的機制中。而回到內質網壓力中,我們過去已知是磷酸化誘導的Syt1 (Arl1的GEF蛋白)活化來促使高度活化的Arl1。然而,對於Gcs1在內質網壓力中的角色目前並不清楚。在本篇研究中,我們發現透過磷酸化,Gcs1也參與在SNARE蛋白Scn1的運輸中。然而磷酸化的Gcs1並不影響其自身的酵素活性,代表其非透過改變Arl1的活性來影響Snc1運輸。我們發現磷酸化會影響Gcs1與Snc1之間的蛋白交互作用。綜合以上,我們透過這些研究了解到高基氏體蛋白Imh1以及GTPase活化蛋白Gcs1在細胞壓力下的調控以及所扮演的角色。zh_TW
dc.description.abstractSmall GTPases are responsible for protein transport in the cells. They localize on the Golgi, which serves as a protein sorting hub. The activity of small GTPases is regulated by Guanine nucleotide exchange factors (GEFs) and GTPase activating proteins (GAPs). Here, we focus on the small GTPase, Arl1, which localizes at the late-Golgi and is responsible for the protein retrograde transport under cellular stresses. Arl1 is activated by the known GEF, Syt1, and Gcs1 acts as a GAP for Arl1 to facilitate its inactivation. The downstream effectors of Arl1 include Golgin Imh1, GPI-anchor protein Gas1, and adaptor protein Gga2. In our previous finding, the activated Arl1 recruits Imh1 to the Golgi, and the Golgi-localized Imh1 then tethers the SNARE proteins to maintain retrograde transport under ER stress conditions. In addition to the ER stress, we further found that Imh1 also plays an important role under glucose deprivation. In this study, we revealed that the localization of Imh1 is regulated by the phosphorylation status under glucose deprivation, and the localization change is related to the maintenance of Golgi compartment under glucose deprivation. These results emphasize the role of Arl1 and Imh1 under stress conditions. Besides, we further investigate the role of Gcs1, the GAP of Arl1, under ER stress conditions. We previously reported that the phosphorylated GEF Syt1 is required for enhancing the vesicle transport function of Arl1 and Imh1, but the role of Gcs1 under ER stress is still unclear. In this study, we found that Gcs1 is phosphorylated under ER stress, and the phosphorylated Gcs1 defects its function in SNARE protein transport. Although Gcs1 is the GAP of Arl1, we surprisingly found that the phosphorylated Gcs1-regulated SNARE transport is independent of Arl1 activity but dependent on the direct interaction with Snc1. In summary, we reveal the function and regulation of Golgin Imh1 and Arf-GAP Gcs1 under different cellular stress.en
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dc.description.tableofcontents目次
口試委員審定書 1
致謝 2
中文摘要 3
Abstract 4
Part I. Functional and structural characterization of phosphorylated Golgin Imh1 under glucose deprivation 10
中文摘要 10
Abstract 11
Introduction 12
Vesicle trafficking in cells 12
Small GTPase 13
Golgin tethering protein 15
Vesicle transport under Glucose deprivation 18
Snf1/AMP-activated kinase 18
Materials and Methods 20
Strains, plasmid, antibodies, and reagents 20
Microscopy and image analysis 20
Series spotting assay for high-temperature sensitivity 21
Yeast two-hybrid analysis 21
Purification of recombinant protein from E. coli 22
Protein purification from yeast 23
In vitro binding assay 24
In vitro kinase assay 24
Protein interaction analysis 25
Yeast total lysate collection and western blot analysis 26
Stable isotope labeling by amino acids in cell culture 27
Mass spectrometry analysis 28
Limited proteolysis assay 28
Gel filtration analysis 29
Intrinsic tryptophan fluorescence measurement 29
Size exclusion chromatography with multi-angle static light scattering (SEC-MALS) 30
Sedimentation velocity analysis by analytical ultracentrifugation 30
Chemical cross-linking 31
In-solution digestion 31
Liquid chromatography-tandem mass spectrometry (LC-MS/MS) analysis 32
Quantitative and statistical analysis 33
Tables 34
Table 1. Yeast strain used in this study 34
Table 2. Plasmid used in this study 35
Table 3. Antibody used in this study 38
Results 39
Imh1 mislocalized under glucose deprivation 39
Imh1 is phosphorylated at Ser606, Ser802, and Ser804 in response to glucose deprivation 40
Phosphorylation of Imh1 at Ser606, Ser802, and Ser804 is responsible for its localization change under glucose deprivation. 40
The phospho-deficient Imh1 is still under the regulation of Syt1 and Arl1. 42
The phosphorylation of Imh1 Ser606, Ser802, and Ser804 does not change its its interaction with Arl1. 43
The phosphorylation of Imh1 Ser606, Ser802, and Ser804 has no effect on its self-interaction maintainance. 43
The phosphorylation of Imh1 Ser606, Ser802, and Ser804 alters its conformation leading to mislocalization 44
Snf1 regulates the localization and phosphorylation of Imh1 under glucose deprivation 45
Phosphorylated Imh1 at S802 and S804 impairs its suppression function on retrograde transport and growth defects in ypt6Δ 47
Phosphorylation of Imh1 compromises Golgi compartmentalization under glucose deprivation 48
Discussion 50
Figures 53
Figure 1. Imh1 is dissociated from the Golgi under long-term culture. 53
Figure 2. The protein level of Imh1 remains unchanged under long-term culture. 54
Figure 3. Glucose deprivation impairs Imh1 localization at the late-Golgi. 55
Figure 4. Effect of Golgi-resident proteins under glucose deprivation. 56
Figure 5. The glucose-deprivation-induced Imh1 mislocalization is reversed by re-complement of glucose. 58
Figure 6. Increased phosphorylation of Imh1 at Ser606, Ser802, and Ser804 under glucose deprivation. 59
Figure 7. The localization of Imh1 under glucose deprivation is regulated by the phosphorylation at its Ser606, Ser802, and Ser804. 60
Figure 8. The phosphorylation at Ser606, Ser802, and Ser804 are all required for the regulation of Imh1 Golgi-localization. 62
Figure 9. The phosphorylation on Ser802 and Ser804 of Imh1 regulates Golgi-localization of Imh1-C177. 64
Figure 10. Golgi recruitment of Imh1S606A,S802A,S804A is regulated by the Syt1-Arl1 pathway. 65
Figure 11. The localization of Arl1 is restored by the phosphor-deficient Imh1 under glucose deprivation. 66
Figure 12. The interaction between Imh1 and Arl1 is maintained despite Imh1 phosphorylation. 68
Figure 13. The structural prediction of Imh1. 70
Figure 14. DsRed-Imh1 retains Golgi punctate localization under glucose deprivation. 72
Figure 15. Phosphorylation of Imh1 does not affect its self-interaction. 74
Figure 16. The phosphorylation of Imh1 alters the elution performance of recombinant Imh1-C213 in gel filtration analysis. 76
Figure 17. Imh1WT-C213 and Imh1S802D,S804D-C213 both form dimer in vitro. 77
Figure 18. The phosphorylation of Imh1 does not change its intrinsic tryptophan fluorescence in vitro. 78
Figure 19. Phosphorylation of Imh1 alters its trypsin digestion profile. 80
Figure 20. Localization of Imh1 under glucose deprivation is regulated by Snf1. 81
Figure 21. Snf1 regulates the localization of Imh1 via the Imh1 phosphorylation under glucose deprivation. 83
Figure 22. Snf1 and Imh1 are associated with each other under glucose deprivation. 85
Figure 23. Snf1 phosphorylates Imh1 in vitro. 86
Figure 24. Snf4 was essential for the dissociation of Imh1 from Golgi during glucose deprivation. 88
Figure 25. The phosphorylation at Ser802 and Ser804 of Imh1 regulates its function in suppression of high-temperature growth defect of ypt6Δ. 89
Figure 26. The phosphorylation at Ser802 and Ser804 of Imh1 is iv volved in proper localization of Snc1 and Vps53 in ypt6Δ. 90
Figure 27. The phosphorylation at Ser802 and Ser804 of Imh1 is related to its suppression function in the localization of Arl1 and Imh1 in ypt6Δ. 91
Figure 28. Imh1 phosphorylation mediated by glucose deprivation attenuates the Golgi compartmentalization. 92
Figure 29. Model of Snf1-mediated Imh1 phosphorylation in the regulation of Golgi compartmentalization under glucose deprivation. 94
Reference 95
Part II. The study of Arf-GAP Gcs1 phosphorylation modulates SNARE Snc1 recycling transport in response to ER 102
中文摘要 102
Abstract 103
Introduction 104
Vesicle trafficking and small GTPases 104
GTPase activating protein (GAP) 106
ER stress 107
Materials and Methods 109
Strains, plasmid, antibodies, and reagents 109
Microscopy and image analysis 109
Series spotting assay for drug sensitivity test 109
Yeast two-hybrid analysis 110
Purification of recombinant protein from E. coli 111
Yeast total lysate collection and western blot analysis 112
Fractionation 113
Stable isotope labeling by amino acids in cell culture 114
Mass spectrometry analysis 114
Quantitative and statistical analysis 115
Tables 116
Table 1. Yeast strain used in this study 116
Table 2. Plasmid used in this study 117
Table 3. Antibody used in this study 119
Results 120
Gcs1 is required for the proper Snc1 localization under tunicamycin-induced ER stress 120
Gcs1-regulated Snc1 localization under tunicamycin-induced ER stress is independent of Arl1-Imh1 function 121
The endosomal localization of Gcs1 is responsible its function in regulating Snc1 transport 122
The phosphorylation of Gcs1 is not involved in its localization change 123
The phosphorylation of Gcs1 increases its interaction with Snc1 124
Slt2/ERK2 phosphorylates Gcs1 under tunicamycin-induced ER stress 124
Discussion 126
Figures 129
Figure 1. Phosphorylation of Gcs1 at Ser157, Thr161, Ser321, and Ser322 increases under tunicamycin-induced ER stress. 129
Figure 2. Tunicamycin-induced phosphorylation of Gcs1 impairs its function in Snc1 recycling to the plasma membrane. 130
Figure 3. The phosphorylation of Gcs1 at Ser157, Thr161, Ser321, and Ser322 is required for attenuating Snc1 recycling under tunicamycin-induced ER stress. 132
Figure 4. The phosphorylation of Gcs1 does not impact the multiple function of Arl1 at the Golgi. 134
Figure 5. The phosphorylation of Gcs1 does not affect its GAP activity in regulating the GTP-hydrolysis of Arl1. 135
Figure 6. Overexpression of phosphorylated Imh1 can not restore the Snc1 mislocalization in gcs1 mutant expressing Gcs1T161E under tunicamycin-induced ER stress. 136
Figure 7. The endosomal localization of Gcs1 is increased following tunicamycin treatment. 138
Figure 8. Gcs1ALPS::FYVE and Gcs1ALPS::AH localize at the late-Golgi and endosome, respectively. 140
Figure 9. The differential localization of Gcs1 at the Golgi and endosome modifies its cellular functions. 141
Figure 10. The subcellular distribution of Gcs1 is altered under tunicamycin treatment. 143
Figure 11. The localization of phosphorylated Gcs1 at the Golgi or endosome is not altered. 144
Figure 12. The phosphorylation of Gcs1 slightly increases its interaction with Snc1 and Snc2. 146
Figure 13. The Ire1-hac1 signal is not responsible for the phosphorylation of Gcs1 under tunicamycin-induced ER stress. 147
Figure 14. Slt2/ERK2 is responsible for the phosphorylation of Gcs1 under tunicamycin-induced ER stress. 148
Figure 15. The proposed model outlines the regulation of ArfGAP Gcs1 in attenuating SNARE Snc1 recycling transport under tunicamycin-induced ER stress. 149
Reference 150
 
-
dc.language.isoen-
dc.subjectGTPase活化蛋白zh_TW
dc.subject高基氏體蛋白zh_TW
dc.subject囊泡運輸zh_TW
dc.subject細胞壓力zh_TW
dc.subjectArf-GAPen
dc.subjectvesicle traffickingen
dc.subjectcellular stressesen
dc.subjectGolginen
dc.title探討在壓力情況下磷酸化高基體體蛋白Imh1及腺嘌呤核苷二磷酸核醣化因子GTPase活化蛋白Gcs1對高基體運輸的調控zh_TW
dc.titlePhosphorylation of Golgin Imh1 and Arf-GAP Gcs1 regulates Golgi vesicle traffic under cellular stressen
dc.typeThesis-
dc.date.schoolyear113-2-
dc.description.degree博士-
dc.contributor.oralexamcommittee鄧述諄;王昭雯;陳瑞華;林敬哲;游佳融;劉雅雯zh_TW
dc.contributor.oralexamcommitteeShu-Chun Teng;Chao-Wen Wang;Ruey-Hwa Chen;Jing-Jer Lin;Chia-Jung Yu;Ya-Wen Liuen
dc.subject.keyword高基氏體蛋白,GTPase活化蛋白,細胞壓力,囊泡運輸,zh_TW
dc.subject.keywordGolgin,cellular stresses,Arf-GAP,vesicle trafficking,en
dc.relation.page157-
dc.identifier.doi10.6342/NTU202502041-
dc.rights.note同意授權(限校園內公開)-
dc.date.accepted2025-07-22-
dc.contributor.author-college醫學院-
dc.contributor.author-dept分子醫學研究所-
dc.date.embargo-lift2030-07-18-
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