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  1. NTU Theses and Dissertations Repository
  2. 電機資訊學院
  3. 光電工程學研究所
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/98239
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DC 欄位值語言
dc.contributor.advisor孫啟光zh_TW
dc.contributor.advisorChi-Kuang Sunen
dc.contributor.author黃書安zh_TW
dc.contributor.authorShu-An Hwangen
dc.date.accessioned2025-07-30T16:27:29Z-
dc.date.available2025-07-31-
dc.date.copyright2025-07-30-
dc.date.issued2025-
dc.date.submitted2025-07-15-
dc.identifier.citation[1] W. Denk, J. H. Strickler, and W. W. Webb, "Two-photon laser scanning fluorescence microscopy," Science, vol. 248, no. 4951, pp. 73-76, 1990.
[2] F. Helmchen and W. Denk, "Deep tissue two-photon microscopy," Nature methods, vol. 2, no. 12, pp. 932-940, 2005.
[3] V. Crosignani et al., "Deep tissue fluorescence imaging and in vivo biological applications," Journal of biomedical optics, vol. 17, no. 11, pp. 116023-116023, 2012.
[4] T. Hakamata et al., "Photomultiplier tubes: basics and applications," Hamamatsu Photonics KK Electron Tube Division, Hamamatsu City, 2006.
[5] L. Fleury, J.-M. Segura, G. Zumofen, B. Hecht, and U. Wild, "Nonclassical photon statistics in single-molecule fluorescence at room temperature," Physical review letters, vol. 84, no. 6, p. 1148, 2000.
[6] E. Bloemsma and J. Knoester, "Photon emission statistics and photon tracking in single-molecule spectroscopy of molecular aggregates: Dimers and trimers," The Journal of Chemical Physics, vol. 136, no. 22, 2012.
[7] Y. He and E. Barkai, "Super-and sub-Poissonian photon statistics for single molecule spectroscopy," The Journal of chemical physics, vol. 122, no. 18, 2005.
[8] W. Moerner and D. P. Fromm, "Methods of single-molecule fluorescence spectroscopy and microscopy," Review of Scientific instruments, vol. 74, no. 8, pp. 3597-3619, 2003.
[9] J. Schedlbauer et al., "Ultrafast single-molecule fluorescence measured by femtosecond double-pulse excitation photon antibunching," Nano Letters, vol. 20, no. 2, pp. 1074-1079, 2019.
[10] S. M. Ross, Introduction to probability models. Academic press, 2014.
[11] J. Platisa and V. A. Pieribone, "Genetically encoded fluorescent voltage indicators: are we there yet?," Current opinion in neurobiology, vol. 50, pp. 146-153, 2018.
[12] Y. Xu, P. Zou, and A. E. Cohen, "Voltage imaging with genetically encoded indicators," Current opinion in chemical biology, vol. 39, pp. 1-10, 2017.
[13] A. Lab. "Voltage and calcium imaging of the same neuron." UConn Health. https://health.uconn.edu/antic-lab/image-gallery/ (accessed 6/23, 2025).
[14] S. W. Evans et al., "A positively tuned voltage indicator for extended electrical recordings in the brain," Nature Methods, vol. 20, no. 7, pp. 1104-1113, 2023.
[15] J. Platisa et al., "High-speed low-light in vivo two-photon voltage imaging of large neuronal populations," Nature methods, vol. 20, no. 7, pp. 1095-1103, 2023.
[16] S. Zhao et al., "Deep two-photon voltage imaging with adaptive excitation," Research Square, pp. rs. 3. rs-5434919, 2024.
[17] S. Xiao et al., "Large-scale deep tissue voltage imaging with targeted-illumination confocal microscopy," Nature methods, vol. 21, no. 6, pp. 1094-1102, 2024.
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dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/98239-
dc.description.abstract本研究的重點在於從光子統計的角度出發,創造一個關於雙光子電位影像的模擬方法。由於目前在雙光子電位影像的領域當中,其影像礙於散粒雜訊的限制下,以至於電位影像的亮度成為一項至關重要的議題。本研究也曾致力於做小鼠中腦黑質致密部(SNc)的電位影像研究,然而同樣受限於平均光子數不足,以至於無法看到明顯電位變化。因此,我們從光子統計的角度出發,設計了一套模擬方法,去研究電位影像中的電信號被偵測的可能性。
在本研究的模擬當中,假設了一套完美的量測系統,將重心放在光子數的統計行為上面。以此證明,假若在完美量測系統的條件下,模擬出無法偵測到螢光變化,那麼真實情況便更不可能足以達到可偵測電位訊號的條件。
本研究的模擬方法,提供了相關電位影像實驗的設計去做電位信號評估。依照本研究總結出的幾個重要相關參數,可以評估參數下的實驗條件,其電位信號被偵測的靈敏度及準確率。
zh_TW
dc.description.abstractThe point of this study was to create a two-photon voltage imaging simulation from the perspective of photon statistics. In the field of two-photon voltage imaging, the quality of the images is often limited by shot noise, making brightness a critical issue for the detectability of voltage signals. Our research initially involved in vivo experiments using the ASAP4e GEVIs in the substantia nigra pars compacta (SNc) of the mice brain. However, the experiments were limited by low photon counts, which prevented the detection of clear voltage signals. Thus, from the perspective of photon statistics we designed a simulation method, to investigate the possibility of spike detection in voltage imaging.
In the simulation of this study, a perfect measurement system was assumed, focusing on the photon statistical behavior. This is to demonstrate that if voltage signal spikes cannot be detected even under ideal conditions, their detection under real experimental conditions would be impossible.
This thesis has provided a simulation method to relevant voltage imaging experiments, assessing the voltage signal quality. Based on some important parameters in the summary of this thesis, it is able to evaluate the spike detection sensitivity and precision under the experimental parameters.
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dc.description.provenanceMade available in DSpace on 2025-07-30T16:27:29Z (GMT). No. of bitstreams: 0en
dc.description.tableofcontents誌謝 i
摘要 ii
ABATRACT iii
CONTENT v
FIGURES viii
TABLE xii
Chapter 1 Introduction 1
1.1 Motivation 1
1.2 Thesis Scope 2
Chapter 2 Background Knowledge 4
2.1 Principles of Two-Photon Microscopy 4
2.2 Photodetectors and Photon statistics 4
2.3 Genetically Encoded Voltage Indicators (GEVIs) 7
Chapter 3 In vivo mice experiment 9
3.1 Previous Studies on Two-Photon GEVIs Imaging 9
3.1.1 ASAP4 GEVI 9
3.1.2 Spikey Gi and SpikeyGi2 GEVI 12
3.1.3 Two-photon voltage imaging with adaptive excitation 14
3.2 In vivo ASAP4e Experiment in SNc 16
3.2.1 Two photon microscopy system 16
3.2.2 Mice preparation 17
3.2.3 Experiment Condition 18
3.2.4 Basic Analysis 20
Chapter 4 Simulation 24
4.1 Simulation of measurement system 24
4.1.1 Perfect measurement system 24
4.1.2 Photomultiplier tube and amplifier 25
4.1.3 Data Acquisition system 27
4.2 Random photon generated model 27
4.2.1 Statistic of photon emission 27
4.2.2 Average photon emission rate 29
4.3 Pixel binning 32
4.4 Spike signal added 34
Chapter 5 Result 38
5.1 Spike detected 38
5.1.1 The method of spikes detection 38
5.1.2 True positive (TP), false positive (FP) and false negative (FN) 38
5.2 Sensitivity and precision 39
5.3 Result 40
5.3.1 Variables of simulation 40
5.3.2 Results with variation of photon rate (λ0) 42
5.3.3 Results with variation of bin number (N) 45
5.3.4 Results with variation of spike photon rate change (ΔλAP/λ0) 47
5.4 Theoretical sensitivity and precision 48
5.4.1 Theoretical sensitivity 49
5.4.2 Theoretical precision 52
5.5 Extended result 54
Chapter 6 Conclusion 59
Reference 62
Appendix A 5.3.2 simulation code 64
Appendix B 5.3.3 simulation code 70
Appendix C 5.3.4 simulation code 76
Appendix D 5.5 simulation code 82
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dc.language.isoen-
dc.subject雙光子顯微鏡zh_TW
dc.subject電位影像zh_TW
dc.subject光子統計zh_TW
dc.subjectVoltage imagingen
dc.subjectTwo-photon microscopyen
dc.subjectPhoton statisticsen
dc.title電位影像螢光光子統計之模擬研究zh_TW
dc.titleA Simulation Study on Fluorescence Photon Statistics of Voltage Imagingen
dc.typeThesis-
dc.date.schoolyear113-2-
dc.description.degree碩士-
dc.contributor.oralexamcommittee謝佳龍;陳示國zh_TW
dc.contributor.oralexamcommitteeChia-Lung Hsieh;Shih-Kuo Chenen
dc.subject.keyword雙光子顯微鏡,光子統計,電位影像,zh_TW
dc.subject.keywordTwo-photon microscopy,Photon statistics,Voltage imaging,en
dc.relation.page87-
dc.identifier.doi10.6342/NTU202501717-
dc.rights.note同意授權(全球公開)-
dc.date.accepted2025-07-16-
dc.contributor.author-college電機資訊學院-
dc.contributor.author-dept光電工程學研究所-
dc.date.embargo-lift2025-07-31-
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