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請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/95902
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dc.contributor.advisor林俊宏zh_TW
dc.contributor.advisorChun-Hung Linen
dc.contributor.author郭妍希zh_TW
dc.contributor.authorYen-Hsi Kuoen
dc.date.accessioned2024-09-19T16:17:07Z-
dc.date.available2024-09-20-
dc.date.copyright2024-09-19-
dc.date.issued2024-
dc.date.submitted2024-08-14-
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(2) Liu, F.-T.; Patterson, R. J.; Wang, J. L. Intracellular functions of galectins. Biochim. Biophys. Acta- Gen. Subj. 2002, 1572 (2), 263-273.
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(9) Gao, P.; Simpson, J. L.; Zhang, J.; Gibson, P. G. Galectin-3: its role in asthma and potential as an anti-inflammatory target. Respir. Res. 2013, 14, 1-9.
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(13) Barondes, S. H.; Castronovo, V.; Cooper, D. N.; Cummings, R. D.; Drickamer, K.; Feizi, T.; Gitt, M. A.; Hirabayashi, J.; Hughes, C.; Kasai, K.; et al. Galectins: a family of animal beta-galactoside-binding lectins. Cell 1994, 76 (4), 597-598.
(14) Cooper, D. N. W. Galectinomics: finding themes in complexity. Biochim. Biophys. Acta- Gen. Subj. 2002, 1572 (2), 209-231.
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(16) Rabinovich, G. A.; Toscano, M. A. Turning 'sweet' on immunity: galectin–glycan interactions in immune tolerance and inflammation. Nat. Rev. Immunol. 2009, 9 (5), 338-352.
(17) Huflejt, M. E.; Jordan, E. T.; Gitt, M. A.; Barondes, S. H.; Leffler, H. Strikingly different localization of galectin-3 and galectin-4 in human colon adenocarcinoma T84 cells: galectin-4 is localized at sites of cell adhesion. J Biol Chem 1997, 272 (22), 14294-14303.
(18) Huflejt, M. E.; Leffler, H. Galectin-4 in normal tissues and cancer. Glycoconj. J. 2003, 20 (4), 247-255.
(19) Delacour, D.; Koch, A.; Jacob, R. The Role of Galectins in Protein Trafficking. Traffic 2009, 10 (10), 1405-1413.
(20) Delacour, D.; Gouyer, V.; Zanetta, J. P.; Drobecq, H.; Leteurtre, E.; Grard, G.; Moreau-Hannedouche, O.; Maes, E.; Pons, A.; André, S.; et al. Galectin-4 and sulfatides in apical membrane trafficking in enterocyte-like cells. J Cell Biol 2005, 169 (3), 491-501.
(21) Morelle, W.; Stechly, L.; Andre, S.; Seuningen, I. V.; Porchet, N.; Gabius, H.-J.; Michalski, J.-C.; Huet, G. Glycosylation pattern of brush border-associated glycoproteins in enterocyte-like cells: involvement of complex-type N-glycans in apical trafficking. J Biol Chem 2009, 390 (7), 529-544.
(22) Stowell, S. R.; Arthur, C. M.; Dias-Baruffi, M.; Rodrigues, L. C.; Gourdine, J.-P.; Heimburg-Molinaro, J.; Ju, T.; Molinaro, R. J.; Rivera-Marrero, C.; Xia, B. Innate immune lectins kill bacteria expressing blood group antigen. Nat. Med. 2010, 16 (3), 295-301.
(23) Liu, F.-T.; Bevins, C. L. A sweet target for innate immunity. Nat. Med. 2010, 16 (3), 263-264.
(24) Li, C.-S.; Lo, T.-H.; Tu, T.-J.; Chueh, D.-Y.; Yao, C.-I.; Lin, C.-H.; Chen, P.; Liu, F.-T. Cytosolic galectin-4 enchains bacteria, restricts their motility, and promotes inflammasome activation in intestinal epithelial cells. Proc. Natl. Acad. Sci. 2023, 120 (5), e2207091120.
(25) Hokama, A.; Mizoguchi, E.; Sugimoto, K.; Shimomura, Y.; Tanaka, Y.; Yoshida, M.; Rietdijk, S. T.; De Jong, Y. P.; Snapper, S. B.; Terhorst, C. Induced reactivity of intestinal CD4+ T cells with an epithelial cell lectin, galectin-4, contributes to exacerbation of intestinal inflammation. Immun. 2004, 20 (6), 681-693.
(26) Cao, Z.-Q.; Guo, X.-L. The role of galectin-4 in physiology and diseases. Protein Cell 2016, 7 (5), 314-324.
(27) Bum-Erdene, K.; Leffler, H.; Nilsson, U. J.; Blanchard, H. Structural characterisation of human galectin-4 N-terminal carbohydrate recognition domain in complex with glycerol, lactose, 3’-sulfo-lactose and 2’-fucosyllactose. Sci. Rep. 2016, 6 (1), 20289.
(28) Velázquez‐Campoy, A.; Ohtaka, H.; Nezami, A.; Muzammil, S.; Freire, E. Isothermal titration calorimetry. Curr. Prot. 2004, 23 (1), 17.18. 11-17.18. 24.
(29) Datta, R.; Heaster, T. M.; Sharick, J. T.; Gillette, A. A.; Skala, M. C. Fluorescence lifetime imaging microscopy: fundamentals and advances in instrumentation, analysis, and applications. Biomed. Opt. 2020, 25 (7), 071203-071203.
(30) Sörme, P.; Kahl-Knutsson, B.; Huflejt, M.; Nilsson, U. J.; Leffler, H. Fluorescence polarization as an analytical tool to evaluate galectin–ligand interactions. Anal. Biochem. 2004, 334 (1), 36-47.
(31) Wartchow, C. A.; Podlaski, F.; Li, S.; Rowan, K.; Zhang, X.; Mark, D.; Huang, K.-S. Biosensor-based small molecule fragment screening with biolayer interferometry. J. Comput. Aided Mol. Des. 2011, 25 (7), 669-676.
(32) Abdiche, Y.; Malashock, D.; Pinkerton, A.; Pons, J. Determining kinetics and affinities of protein interactions using a parallel real-time label-free biosensor, the Octet. Anal. Biochem. 2008, 377 (2), 209-217.
(33) Dong, A.; Xu, X.; Edwards, A. M.; Chang, C.; Chruszcz, M.; Cuff, M.; Cymborowski, M.; Di Leo, R.; Egorova, O.; Evdokimova, E.; et al. In situ proteolysis for protein crystallization and structure determination. Nat. Methods. 2007, 4 (12), 1019-1021.
(34) Adams, P. D.; Afonine, P. V.; Bunkóczi, G.; Chen, V. B.; Davis, I. W.; Echols, N.; Headd, J. J.; Hung, L. W.; Kapral, G. J.; Grosse-Kunstleve, R. W.; et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta. Crystallogr. D. Biol. Crystallogr. 2010, 66 (2), 213-221.
(35) Emsley, P.; Cowtan, K. Coot: model-building tools for molecular graphics. Acta. Crystallogr. D. Biol. Crystallogr. 2004, 60 (12), 2126-2132.
(36) Chen, V. B.; Arendall, W. B., 3rd; Headd, J. J.; Keedy, D. A.; Immormino, R. M.; Kapral, G. J.; Murray, L. W.; Richardson, J. S.; Richardson, D. C. MolProbity: all-atom structure validation for macromolecular crystallography. Acta. Crystallogr. D. Biol. Crystallogr. 2010, 66 (1), 12-21.
(37) Bum‐Erdene, K.; Leffler, H.; Nilsson, U. J.; Blanchard, H. Structural characterization of human galectin‐4 C‐terminal domain: elucidating the molecular basis for recognition of glycosphingolipids, sulfated saccharides and blood group antigens. FEBS. J. 2015, 282 (17), 3348-3367.
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dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/95902-
dc.description.abstract半乳糖凝集素 (Galectin) 是一種醣結合蛋白,與醣分子結合後,調節細胞的增殖、凋亡、黏附或遷移等過程。半乳糖凝集-4 (Galectin-4) 屬於與串聯重複型的半乳糖凝集素,具有兩個醣體辨識區,主要表現在消化道上皮細胞中。文獻中指出,半乳糖凝集-4與發炎性腸道疾病 (Inflammatory Bowel Disease, IBD) 息息相關。本研究聚焦於人類半乳糖凝集素-4 (Galectin-4),探討其兩個糖體識別區域 (CRDs) 的結合特異性及其在腸道中的潛在配體。利用多醣體微陣列技術篩選出具有高親和力的配體,並通過生物層干涉技術進行定量分析,確定半乳糖凝集-4N及半乳糖凝集-4C與其醣配體的結合親和力。結晶學技術解析了半乳糖凝集-4N的結構,結果表明,半乳糖凝集-4對岩藻糖基化母乳寡糖具有顯著的結合偏好,結合特性受配體結構長短及岩藻糖基化位置的影響。此外,通過結合天然配體和抑制物的分析,本研究展示了不同結合增強效果,提供了更廣泛的視角來探討針對半乳糖凝集-4N及半乳糖凝集-4C的潛在交互作用特性。這些發現深化了對半乳糖凝集-4在生理和病理過程中作用的理解,也可作為開發半乳糖凝集-4抑制物的基礎。zh_TW
dc.description.abstractGalectins are a family of carbohydrate-binding proteins that regulate various cellular processes such as proliferation, apoptosis, adhesion, and migration upon binding to glycan molecules. Galectin-4, a tandem-repeat type galectin, contains two carbohydrate recognition domains (CRDs) and is primarily expressed in the epithelial cells of the digestive tract. Previous studies have indicated a strong association between Galectin-4 and inflammatory bowel disease (IBD). This research focuses on human Galectin-4, investigating the binding specificities of its two CRDs and identifying potential ligands in the gut. Using glycan microarray technology, high-affinity ligands were screened, followed by quantitative analysis through biolayer interferometry (BLI) to determine the binding affinities of Galectin-4N and Galectin-4C with their glycan ligands. Crystallography was employed to resolve the structure of Galectin-4N, revealing a significant binding preference for fucosylated human milk oligosaccharides, with binding characteristics influenced by glycan length and fucosylation position. Furthermore, the combined analysis of natural ligands and inhibitors demonstrated varied binding enhancement effects, offering broader insights into the potential interaction properties of Galectin-4N and Galectin-4C. These findings deepen our understanding of Galectin-4's roles in physiological and pathological processes and provide a foundation for developing Galectin-4 inhibitors.en
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dc.description.tableofcontents目次
謝誌 i
摘要 ii
Abstract iii
目次 iv
縮寫對照表 vii
表次 ix
圖次 x
第一章 緒論 1
1.1 半乳糖凝集素的介紹 1
1.1.1 半乳糖凝集素-4的介紹 3
1.1.2 半乳糖凝集素-4之生物功能及其重要性 3
1.1.3 半乳糖凝集素的結構 5
1.2 研究動機與目的 7
第二章 結果與討論 8
2.1 半乳糖凝集素-4醣結合之醣晶片分析 8
2.2 半乳糖凝集素-4N, -4C 表現及純化 11
2.2.1 半乳糖凝集素-4N, -4C 之大量表現 12
2.2.2 半乳糖凝集素-4N, -4C 之純化 13
2.3 半乳糖凝集素-4N, -4C 與醣分子的結合專一性定量分析 17
2.3.1 測量結合親和力的方法 18
2.3.2 以生物膜干涉技術測量半乳糖凝集素-4與醣配體的親和力分析 19
2.3.3 半乳糖凝集素-4N, -4C 與醣分子的結合特異性 23
2.4 半乳糖凝集素-4N的晶體結構 28
2.4.1 半乳糖凝集素-4N晶體結晶 28
2.4.2 半乳糖凝集素-4N的晶體整體結構 29
2.4.3 半乳糖凝集素-4N與甘油的複體結構 33
2.5 半乳糖凝集素-4N, -4C 結構分析 35
2.5.1 利用半乳糖凝集素之抑制物作為分析半乳糖凝集素-4N 和 -4C 的結合 35
2.5.2 半乳糖凝集素-4N, -4C的結合特異性和結構分析 36
第三章 結論與未來展望 39
3.1 結論 39
3.2 未來展望 40
第四章 方法與材料 41
4.1 Oligosaccharides 41
4.2 Expression and Purification of Galectin-4N, -4C 41
4.2.1 Expression of Recombinant Proteins 41
4.2.2 Purification of Recombinant Proteins 42
4.3 Glycan Array Analysis 43
4.4 Biolayer Interferometry 44
4.5 Crystallization of Galectin-4N 44
4.6 X-ray data collection and structure determination 45
參考資料 46
附錄 51
-
dc.language.isozh_TW-
dc.title半乳糖凝集素-4與醣配體結合特異性之探討zh_TW
dc.titleInvestigating the Binding Specificity of Galectin-4: Unveiling the Preference for Carbohydratesen
dc.typeThesis-
dc.date.schoolyear112-2-
dc.description.degree碩士-
dc.contributor.oralexamcommittee游景晴;陳文逸;陳宏霖zh_TW
dc.contributor.oralexamcommitteeChing-Ching Yu;Wen-Yih Chen;Hung-Lin Chenen
dc.subject.keyword半乳糖凝集素-4,醣結合特異性,生物膜干涉技術,醣體微陣列,結晶學,岩藻糖基化母乳寡糖,發炎性腸道疾病,zh_TW
dc.subject.keywordGalectin-4,glycan binding specificity,biolayer interferometry,glycan microarray,crystallography,fucosylated human milk oligosaccharides,inflammatory bowel disease,en
dc.relation.page56-
dc.identifier.doi10.6342/NTU202404056-
dc.rights.note未授權-
dc.date.accepted2024-08-14-
dc.contributor.author-college理學院-
dc.contributor.author-dept化學系-
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