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  1. NTU Theses and Dissertations Repository
  2. 醫學院
  3. 微生物學科所
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/91811
完整後設資料紀錄
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dc.contributor.advisor張鑫zh_TW
dc.contributor.advisorShin Changen
dc.contributor.author張嘉凱zh_TW
dc.contributor.authorChia-Kai Changen
dc.date.accessioned2024-02-22T16:49:58Z-
dc.date.available2024-02-23-
dc.date.copyright2024-02-22-
dc.date.issued2024-
dc.date.submitted2024-02-05-
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2. WHO COVID-19 dashboard
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15. Xia Hongjie, Zengguo Cao, Xuping Xie, Xianwen Zhang, John Yun-Chung Chen, Hualei Wang, Vineet D. Menachery, Ricardo Rajsbaum, and Pei-Yong Shi. Evasion of Type I Interferon by SARS-CoV-2. 2020. Cell Rep. 33: 108234.
16. Kaivola Juha, Tuula Anneli Nyman, Sampsa Matikainen. Inflammasomes and SARS-CoV-2 Infection. 2021. Viruses. 13:2513.
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19. Schubert Katharina, Evangelos D Karousis, Ahmad Jomaa, Alain Scaiola, Blanca Echeverria, Lukas-Adrian Gurzeler, Marc Leibundgut, Volker Thiel, Oliver Mühlemann, Nenad Ban. SARS-CoV-2 Nsp1 binds the ribosomal mRNA channel to inhibit translation. 2020. Nat Struct Mol Biol. 27:959-966.
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22. Thoms Matthias, Robert Buschauer, Michael Ameismeier, Lennart Koepke, Timo Denk, Maximilian Hirschenberger, Hanna Kratzat, Manuel Hayn, Timur Mackens-Kiani, Jingdong Cheng, Jan H Straub, Christina M Stürzel, Thomas Fröhlich, Otto Berninghausen, Thomas Becker, Frank Kirchhoff, Konstantin M J Sparrer, Roland Beckmann. Structural basis for translational shutdown and immune evasion by the nsp1 protein of SARS-CoV-2. 2020. Science. 369:1249-1255.
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24. Liu GuanQun, Michaela U Gack. Distinct and orchestrated functions of RNA sensors in innate immunity. 2020. Immunity. 53:26-42.
25. Brisse Morgan, Hinh Ly. Comparative structure and function analysis of the RIG-I-like receptors: RIG-I and MDA5. 2019. Front Immunol. 10:1586.
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27. Kumar Amit, Ankur Kumar, Prateek Kumar, Neha Garg, Rajanish Giri. SARS-CoV-2 NSP1 C-terminal (residues 131–180) is an intrinsically disordered region in isolation. 2021. Curr Res Virol Sci. 2: 100007.
28. Frolov Ilya, Tatiana Agback, Oksana Palchevska, Francisco Dominguez, Alexander Lomzov, Peter Agback, Elena I Frolova. All domains of SARS-CoV-2 nsp1 determine translational shutoff and cytotoxicity of the protein. 2023. J Virol. 97: e0186522.
29. Vora Setu M, Pietro Fontana, Tianyang Mao, Valerie Leger, Ying Zhang, Tian-Min Fu, Judy Lieberman, Lee Gehrke, Ming Shi, Longfei Wang, Akiko Iwasaki, Hao Wu. Targeting stem-loop 1 of the SARS-CoV-2 5’ UTR to suppress viral translation and nsp1 evasion. 2022. Proc Natl Acad Sci U S A. 119: e2117198119.
30. Fitzgerald Katherine A, Sarah M McWhirter, Kerrie L Faia, Daniel C Rowe, Eicke Latz, Douglas T Golenbock, Anthony J Coyle, Sha-Mei Liao, Tom Maniatis. IKKε and TBK1 are essential components of the IRF3 signaling pathway. 2003. Nat Immunol. 4:491-6.
31. Yuan Shuai, Lei Peng, Jonathan J Park, Yingxia Hu, Swapnil C Devarkar, Matthew B Dong, Qi Shen, Shenping Wu, Sidi Chen, Ivan B Lomakin, Yong Xiong. Nonstructural protein 1 of SARS-CoV-2 is a potent pathogenicity factor redirecting host protein synthesis machinery toward viral RNA. 2020. Mol Cell. 80:1055-1066.
32. Bujanic Lucija, Olga Shevchuk, Nicolai von Kügelgen, Anna Kalinina, Katarzyna Ludwik, David Koppstein, Nadja Zerna, Albert Sickmann, Marina Chekulaeva. The key features of SARS-CoV-2 leader and NSP1 required for viral escape of NSP1-mediated repression. 2022. RNA. 28:766-779.
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dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/91811-
dc.description.abstract嚴重急性呼吸道症候群冠狀病毒2型 (Severe Acute Respiratory Syndrome Coronavirus 2,SARS-CoV-2)於2019年底首次於中國大陸武漢省發現,經基因體定序確認後為新型冠狀病毒,屬於Coronaviridae中的Betacoronavirus,感染後主要造成咳嗽和發燒較嚴重的症狀包括肺炎和腎衰竭甚至死亡,截至2023年底共造成7.7億人口感染並導致約700萬人死亡,死亡率約為0.9%。先前研究報告指出SARS-CoV-2非結構性蛋白質1 (non-structural protein 1,NSP1)會抑制第一型和第三型干擾素的啟動子活性。在本研究中,藉由冷光素酶活性分析發現NSP1具有抑制冷光素酶活性的作用,但進一步分析發現其抑制作用並不是直接影響啟動子的活性而是透過抑制冷光素酶的表現。在發現NSP1具有抑制蛋白質轉譯的功能後,本研究針對參與RIG-I/MDA-5訊息傳遞路徑的蛋白質是否會受到NSP1的影響進行探討,結果發現NSP1除了會抑制MDA-5和IFIT3的mRNA和蛋白質表現,同時也會抑制IRF3磷酸化,但卻不影響IFN-β和IFN-λ mRNA表現量。另一方面,實驗結果也發現不具有抑制轉譯功能的點突變NSP1蛋白質,NSP1(K164A/H165A)不會抑制MDA-5和IFIT3的蛋白質表現量,推測NSP1利用抑制轉譯的方式來影響干擾素訊息傳遞路徑相關蛋白質如: MDA-5和IFIT3的表現來抑制干擾素訊息傳遞。zh_TW
dc.description.abstractSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2) appeared in December 2019 in Wuhan, China. After virus genome sequencing and identification, the virus was recognized as a novel coronavirus, which became the 7th coronavirus that can infect human. SARS-CoV-2 belongs to Betacoronavirus, one of the four genera of Coronaviridae. SARS-CoV-2 infection causes cough, fever, and sometimes pneumonia and renal failure or even death. Until December 2023, SARS-CoV-2 has infected 770 million people and caused 7 million deaths, the mortality rate is about 0.9%. In previous studies, SARS-CoV-2 non-structural protein 1 (NSP1) was demonstrated having ability to inhibit type I and type III interferon (IFN) promoter activity. In this study, luciferase reporter assay also showed inhibitory effects of NSP1 on IFN-β and IFN-λ promoter- driven luciferase activity. Nevertheless, the reduced luciferase activity was at least partially, due to an inhibition on luciferase expression rather than a direct effect on the promoter. Whether NSP1 has effects on the expression of protein involving in RIG-I/MDA-5 signaling pathway was then investigated. The results showed that both mRNA and protein expression of MDA-5 and IFIT3 were inhibited by NSP1, and the phosphorylation of IRF3 was also inhibited by NSP1. However, these inhibitory effects did not reflect on the transcription of IFN-β and IFN-λ since the IFN-β and IFN-λ mRNA levels were not affected. On the other hand, NSP1(K164A/H165A), which has lost the function of translation inhibition, had no effect on MDA-5 and IFIT3 protein expression, indicating that NSP1 reduces the protein level of MDA-5 and IFIT3 mainly through translation inhibition. Taken together, this study demonstrated that NSP1 has ability to inhibit expression of specific proteins that participate in interferon signaling.en
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dc.description.tableofcontents中文摘要 i
Abstract ii
目次 iii
壹、緒論 1
一、嚴重急性呼吸道症候群冠狀病毒2型發現與流行病學 1
二、嚴重急性呼吸道症候群冠狀病毒2型臨床症狀 1
三、嚴重急性呼吸道症候群冠狀病毒2型之病毒學 2
四、RNA病毒感染宿主引起的先天性免疫 5
五、研究目的 8
貳、實驗材料與方法 9
一、實驗材料 9
二、實驗方法 15
參、實驗結果 21
一、 探討NSP1對IFN-β和IFN-λ promoter-driven luciferase activity的影響 21
二、 探討SARS-CoV-2蛋白質是否廣泛存在translation inhibition的現象 22
三、 探討NSP1對luciferase表現量的影響 22
四、 探討NSP1對轉錄因子IRF3表現量和其磷酸化及對IFN-β和IFN-λ mRNA表現量的影響 23
五、探討NSP1與其mutant和subdomains之功能 24
六、探討NSP1對免疫相關基因的影響 25
七、探討NSP1(K164A/H165A)對MDA-5和IFIT3蛋白質表現量的影響 26
肆、討論 27
一、 NSP1(C)沒有影響是因為沒有表現或是有其他因素 27
二、為何NSP1對蛋白質有選擇性的抑制 28
三、IRF3磷酸化如何被NSP1抑制 28
四、IRF3磷酸化減少但不影響IFN-β和IFN-λ mRNA表現量 29
五、 NSP1對宿主transcription和translation的調控 29
六、分析MDA-5與IFIT3 mRNA表現量受NSP1抑制可能原因 30
伍、圖表 32
陸、參考文獻 48
柒、附錄 53
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dc.language.isozh_TW-
dc.subject嚴重急性呼吸道症候群冠狀病毒2型zh_TW
dc.subject非結構性蛋白質1zh_TW
dc.subjectRIG-I/MDA-5訊息傳遞路徑zh_TW
dc.subject蛋白質轉譯抑制zh_TW
dc.subjectSARS-CoV-2en
dc.subjecttranslation inhibitionen
dc.subjectRIG-I/MDA-5 signaling pathwayen
dc.subjectnon-structural protein 1 (NSP1)en
dc.titleSARS-CoV-2 非結構性蛋白質1 (NSP1) 調控 RIG-I/MDA-5 訊息傳遞之角色zh_TW
dc.titleThe role of SARS-CoV-2 non-structural protein 1 (NSP1) in modulating RIG-I/MDA-5 signalingen
dc.typeThesis-
dc.date.schoolyear112-1-
dc.description.degree碩士-
dc.contributor.oralexamcommittee張永祺;顧家綺zh_TW
dc.contributor.oralexamcommitteeYung-Chi Chang;Chia-Chi Kuen
dc.subject.keyword嚴重急性呼吸道症候群冠狀病毒2型,非結構性蛋白質1,RIG-I/MDA-5訊息傳遞路徑,蛋白質轉譯抑制,zh_TW
dc.subject.keywordSARS-CoV-2,non-structural protein 1 (NSP1),RIG-I/MDA-5 signaling pathway,translation inhibition,en
dc.relation.page55-
dc.identifier.doi10.6342/NTU202400527-
dc.rights.note同意授權(限校園內公開)-
dc.date.accepted2024-02-05-
dc.contributor.author-college醫學院-
dc.contributor.author-dept微生物學研究所-
dc.date.embargo-lift2029-02-02-
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