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  1. NTU Theses and Dissertations Repository
  2. 工學院
  3. 分子科學與技術國際研究生博士學位學程
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/88635
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor倪其焜zh_TW
dc.contributor.advisorChi-Kung Nien
dc.contributor.author劉佳燕zh_TW
dc.contributor.authorChia-Yen Liewen
dc.date.accessioned2023-08-15T17:09:39Z-
dc.date.available2023-11-09-
dc.date.copyright2023-08-15-
dc.date.issued2023-
dc.date.submitted2023-08-04-
dc.identifier.citationReferences (Chapter 1)

1. Seeberger, P. Monosaccharide Diversity. In Essentials of Glycobiology [Internet]. 4rd Edition, Cold Spring Harbor Laboratory Press, 2022.
2. Davis, B. G.; Fairbanks, A. J. Carbohydrate Chemistry; Oxford University Press, 2006.
3. Prestegard, J. H.; Liu, J.; Widmalm, G. Oligosaccharides and Polysaccharides. In Essentials of Glycobiology [Internet]. 4rd Edition, Cold Spring Harbor Laboratory Press, 2022.
4. Ćirić, D.; Milošević-Jovčić, N.; Ilić, V.; Petrović, S. A Longitudinal Study of the Relationship between Galactosylation Degree of Igg and Rheumatoid Factor Titer and Avidity During Long-Term Immunization of Rabbits with Bsa. Autoimmunity 2005, 38 (6),409-416
5. Nezlin, R. The Immunoglobulins: Structure and Function; Academic Press, 1998.
6. Ruhaak, L. R.; Miyamoto, S.; Lebrilla, C. B. Developments in the Identification of Glycan Biomarkers for the Detection of Cancer. Mol. Cell Proteomics 2013, 12 (4), 846-855
7. Pinho, S. S.; Reis, C. A. Glycosylation in Cancer: Mechanisms and Clinical Implications. Nat. Rev. Cancer 2015, 15 (9), 540-555
8. Shammala, F. A. Mass Spectrometry-Based Analysis of Glycoproteins and Its Clinical Applications in Cancer Biomarker Discovery. Braz. J. Biol. 2017, 4 (7), 203-215
9. Pezer, M.; Stambuk, J.; Perica, M.; Razdorov, G.; Banic, I.; Vuckovic, F.; Gospic, A. M.; Ugrina, I.; Vecenaj, A.; Bakovic, M. P. Effects of Allergic Diseases and Age on the Composition of Serum Igg Glycome in Children. Sci. Rep. 2016, 6, 1-10

References (Chapter 2)

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22. Mechref, Y.; Novotny, M. V. Structural Investigations of Glycoconjugates at High Sensitivity. Chem. Rev. 2002, 102 (2), 321-370
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25. Wang, C.; Wen, Y.; Yang, M.; Huang, L.; Wang, Z.; Fan, J. High-Sensitivity Quantification of Glycosphingolipid Glycans by Esi-Ms Utilizing Ozonolysis-Based Release and Isotopic Girard's Reagent Labeling. Anal. Biochem. 2019, 582, 113355-113355
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30. Ciucanu, I.; Kerek, F. A Simple and Rapid Method for the Permethylation of Carbohydrates. Carbohydr. Res. 1984, 131 (2), 209-217
31. Waeghe, T. J.; Darvill, A. G.; McNeil, M.; Albersheim, P. Determination, by Methylation Analysis, of the Glycosyl-Linkage Compositions of Microgram Quantities of Complex Carbohydrates. Carbohydr. Res. 1983, 123 (2), 281-304
32. Fournet, B.; Strecker, G.; Leroy, Y.; Montreuil, J. Gas-Liquid Chromatography and Mass Spectrometry of Methylated and Acetylated Methyl Glycosides. Application to the Structural Analysis of Glycoprotein Glycans. Anal. Biochem. 1981, 116 (2), 489-502
33. Ashline, D.; Singh, S.; Hanneman, A.; Reinhold, V. Congruent Strategies for Carbohydrate Sequencing. 1. Mining Structural Details by Ms N. Anal. Chem. 2005, 77 (19), 6250-6262
34. Pabst, M.; Kolarich, D.; Pöltl, G.; Dalik, T.; Lubec, G.; Hofinger, A.; Altmann, F. Comparison of Fluorescent Labels for Oligosaccharides and Introduction of a New Postlabeling Purification Method. Anal. Biochem. 2009, 384 (2), 263-273
35. Maina, N. H.; Juvonen, M.; Domingues, R. M.; Virkki, L.; Jokela, J.; Tenkanen, M. Structural Analysis of Linear Mixed-Linkage Glucooligosaccharides by Tandem Mass Spectrometry. Food Chem. 2013, 136 (3-4), 1496-1507
36. Chai, W.; Piskarev, V.; Lawson, A. M. Negative-Ion Electrospray Mass Spectrometry of Neutral Underivatized Oligosaccharides. Anal. Chem. 2001, 73 (3), 651-657
37. Ashwood, C.; Lin, C.-H.; Thaysen-Andersen, M.; Packer, N. H. Discrimination of Isomers of Released N-and O-Glycans Using Diagnostic Product Ions in Negative Ion Pgc-Lc-Esi-Ms/Ms. Journal of The American Society for Mass Spectrometry 2018, 29 (6), 1194-1209
38. Harvey, D. J. Fragmentation of Negative Ions from Carbohydrates: Part 1. Use of Nitrate and Other Anionic Adducts for the Production of Negative Ion Electrospray Spectra from N-Linked Carbohydrates. Journal of the American Society for Mass Spectrometry 2005, 16 (5), 622-630
39. Stadlmann, J.; Pabst, M.; Altmann, F. Analytical and Functional Aspects of Antibody Sialylation. J. Clin. Immunol. 2010, 30 (1), 15-19
40. Sethi, M. K.; Thaysen-Andersen, M.; Smith, J. T.; Baker, M. S.; Packer, N. H.; Hancock, W. S.; Fanayan, S. Comparative N-Glycan Profiling of Colorectal Cancer Cell Lines Reveals Unique Bisecting Glcnac and Α-2, 3-Linked Sialic Acid Determinants Are Associated with Membrane Proteins of the More Metastatic/Aggressive Cell Lines. J. Proteome Res. 2014, 13 (1), 277-288
41. Sethi, M. K.; Kim, H.; Park, C. K.; Baker, M. S.; Paik, Y.-K.; Packer, N. H.; Hancock, W.S.; Fanayan, S.; Thaysen-Andersen, M. In-Depth N-Glycome Profiling of Paired Colorectal Cancer and Non-Tumorigenic Tissues Reveals Cancer-, Stage-and Egfr-Specific Protein N-Glycosylation. Glycobiology 2015, 25 (10), 1064-1078
42. Lee, L. Y.; Thaysen-Andersen, M.; Baker, M. S.; Packer, N. H.; Hancock, W. S.; Fanayan, S. Comprehensive N-Glycome Profiling of Cultured Human Epithelial Breast Cells Identifies Unique Secretome N-Glycosylation Signatures Enabling Tumorigenic Subtype Classification. J. Proteome Res. 2014, 13 (11), 4783-4795
43. Chik, J. H.; Zhou, J.; Moh, E. S.; Christopherson, R.; Clarke, S. J.; Molloy, M. P.; Packer, N. H. Comprehensive Glycomics Comparison between Colon Cancer Cell Cultures and Tumours: Implications for Biomarker Studies. J. Proteomics 2014, 108, 146-162
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46. Royle, L.; Campbell, M. P.; Radcliffe, C. M.; White, D. M.; Harvey, D. J.; Abrahams, J. L.; Kim, Y.-G.; Henry, G. W.; Shadick, N. A.; Weinblatt, M. E. Hplc-Based Analysis of Serum N-Glycans on a 96-Well Plate Platform with Dedicated Database Software. Anal. Biochem. 2008, 376 (1), 1-12
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References(Chapter 3)

1. Tsai, S. T.; Chen, J. L.; Ni, C. K. Does Low‐Energy Collision‐Induced Dissociation of Lithiated and Sodiated Carbohydrates Always Occur at Anomeric Carbon of the Reducing End? Rapid Commun. Mass Spectrom. 2017, 31 (21), 1835-1844
2. Chen, J.-L.; Nguan, H. S.; Hsu, P.-J.; Tsai, S.-T.; Liew, C. Y.; Kuo, J.-L.; Hu, W.-P.; Ni,C.-K. Collision-Induced Dissociation of Sodiated Glucose and Identification of Anomeric Configuration. Phys. Chem. Chem. Phys. 2017, 19 (23), 15454-15462
3. Huynh, H. T.; Phan, H. T.; Hsu, P.-J.; Chen, J.-L.; Nguan, H. S.; Tsai, S.-T.; Roongcharoen, T.; Liew, C. Y.; Ni, C.-K.; Kuo, J.-L. Collision-Induced Dissociation of Sodiated Glucose, Galactose, and Mannose, and the Identification of Anomeric Configurations. Phys. Chem. Chem. Phys. 2018, 20 (29), 19614-19624
4. Domon, B.; Costello, C. E. A Systematic Nomenclature for Carbohydrate Fragmentations in Fab-Ms/Ms Spectra of Glycoconjugates. Glycoconjugate J. 1988, 5 (4), 397-409
5. Nguan, H.-S.; Ni, C.-K. Collision-Induced Dissociation of Α-Isomaltose and Α-Maltose. J. Phys. Chem. A 2022, 126 (47), 8799-8808

References (Chapter 4)

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9. Asam, M. R.; Glish, G. L. Tandem Mass Spectrometry of Alkali Cationized Polysaccharides in a Quadrupole Ion Trap. J. Am. Soc. Mass Spectrom. 1997, 8, 987–995.
10. Xue, J. et al. Determination of Linkage Position and Anomeric Configuration in Hex-Fuc Disaccharides Using Electrospray Ionization Tandem Mass Spectrometry. Rapid Commun. Mass Spectrom. 2004, 18, 1947–1955.
11. Harvey, D. J. Fragmentation of Negative Ions from Carbohydrates: Part 1. Use of Nitrate and Other Anionic Adducts for the Production of Negative Ion Electrospray Spectra from N-linked Carbohydrates. J. Am. Soc. Mass Spectrom. 2005, 16, 622–630.
12. Harvey, D. J. Fragmentation of Negative Ions from Carbohydrates: Part 2. Fragmentation of High-Mannose N-linked Glycans. J. Am. Soc. Mass Spectrom. 2005, 16, 631–646.
13. Ashline, D.; Singh, S.; Hanneman, A.; Reinhold, V. Congruent Strategies for Carbohydrate Sequencing. 1. Mining Structural Details by MSn. Anal. Chem. 2005, 77, 6250–6262.
14. Zhang, H. L.; Singh, S.; Reinhold, V. N. Congruent Strategies for Carbohydrate Sequencing. 2. FragLib: An MSn Lpectral library. Anal. Chem. 2005, 77, 6263–6270.
15. Zhang, H.; Brokman, S. M.; Fang, N.; Pohl, N. L.; Yeung, E. S. Linkage Position and Residue Identification of Disaccharides by Tandem Mass Spectrometry and Linear Discriminant Analysis. Rapid Commun. Mass Spectrom. 2008, 22, 1579–1586.
16. Costa, E. V. et al. Differentiation of Isomeric Pentose Disaccharides by Electrospray Ionization Tandem Mass Spectrometry and Discriminant Analysis. Rapid Commun. Mass Spectrom. 2012,26, 2897–904.
17. Singh, C.; Zampronio, C.G.; Creese, A. J.; Cooper, H. J. Higher Energy Collision Dissociation (HCD) Product Ion-Triggered Electron Transfer Dissociation (ETD) Mass Spectrometry for the Analysis of N-linked Glycoproteins. J. Proteome. Res. 2011, 11, 4517–4525.
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23. Hsu, H. C.; Liew, C. Y.; Huang, S. P.; Tsai, S. T.; Ni, C. K. Simple Approach for De Novo Structural Identification of Mannose Trisaccharides. J. Am. Soc. Mass Spectrom. 2018, 29, 470−480.
24. Hsu, H. C.; Liew, C. Y.; Huang, S. P.; Tsai, S. T.; Ni, C. K. Simple Method for De Novo Structural Determination of Underivatised Glucose Oligosaccharides. Sci. Rep. 2018, 8, 5562-5562.
25. Tsai, S.T. et al. Automatically Full Glycan Structural Determination with Logically Derived Sequence TandemMmass Spectrometry. ChemBioChem 2019, 20, 2351−2359.
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32. Chen, J. L. et al. Collision-Induced Dissociation of Sodiated Glucose and Identification of Anomeric Configuration. Phys. Chem. Chem. Phys. 2017, 19, 15454–15462.
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References (Chapter 5)

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4. Elder, J. H.; Alexander, S. "Endo-Beta-N-Acetylglucosaminidase-F – Endoglycosidase from Flavobacterium-Meningosepticum That Cleaves Both High-Mannose and Complex Glycoproteins. Proc.Nat. Acad. Sci. 1982, 79 (15), 4540-4544
5. Fan, J. Q.; Lee, Y. C. Detailed Studies on Substrate Structure Requirements of Glycoamidases a and F. J. Biol. Chem. 1997, 272 (43), 27058-27064
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10. Huynh, H. T.; Phan, H. T.; Hsu, P. J.; Chen, J. L.; Nguan, H. S.; Tsai, S. T.; Roongcharoen, T.; Liew, C. Y.; Ni, C. K.; Kuo, J. L. Collision-Induced Dissociation of Sodiated Glucose, Galactose, and Mannose, and the Identification of Anomeric Configurations. Phys. Chem. Chem. Phys. 2018, 20 (29), 19614-19624
11. Chiu, C. C.; Tsai, S. T.; Hsu, P. J.; Huynh, H. T.; Chen, J. L.; Phan, H. T.; Huang, S. P.; Lin, H. Y.; Kuo, J. L.; Ni, C. K. Unexpected Dissociation Mechanism of Sodiated NAcetylglucosamine and N-Acetylgalactosamine. J. Phys. Chem. A 2019, 123 (16), 3441-3453
12. Chiu, C. C.; Huynh, H. T.; Tsai, S. T.; Lin, H. Y.; Hsu, P. J.; Phan, H. T.; Karumanthra, A.; Thompson, H.; Lee, Y. C.; Kuo, J. L.; et al. Toward Closing the Gap between Hexoses and N-Acetlyhexosamines: Experimental and Computational Studies on the Collision-Induced Dissociation of Hexosamines. J. Phys. Chem. A 2019, 123 (31), 6683-6700
13. Tsai, S. T.; Liew, C. Y.; Hsu, C.; Huang, S. P.; Weng, W. C.; Kuo, Y. H.; Ni, C. K. Automatic Full Glycan Structural Determination through Logically Derived Sequence Tandem Mass 159 doi:10.6342/NTU202302664Spectrometry. Chembiochem 2019, 20 (18), 2351-2359
14. Hsu, H. C.; Liew, C. Y.; Huang, S. P.; Tsai, S. T.; Ni, C. K. Simple Method for De Novo Structural Determination of Underivatised Glucose Oligosaccharides. Sci. Rep. 2018, 8 (1), 5562-5562

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30. Tsai, S. T.; Chen, J. L.; Ni, C. K. Does Low-Energy Collision-Induced Dissociation of Lithiated and Sodiated Carbohydrates Always Occur at Anomeric Carbon of the Reducing End? Rapid Commun. Mass Spectrom. 2017, 31, 1835-1844
31. Chen, J. L.; Nguan, H. S.; Hsu, P. J.; Tsai, S. T.; Liew, C. Y.; Kuo, J. L.; Hu, W. P.; Ni, C. K. Collision-Induced Dissociation of Sodiated Glucose and Identification of Anomeric Configuration. Phys Chem Chem Phys 2017, 19 (23), 15454-15462
32. Huynh, H. T.; Phan, H. T.; Hsu, P. J.; Chen, J. L.; Nguan, H. S.; Tsai, S. T.; Roongcharoen, T.; Liew, C. Y.; Ni, C. K.; Kuo, J. L. Collision-Induced Dissociation of Sodiated Glucose, Galactose, and Mannose, and the Identification of Anomeric Configurations. Phys Chem Chem Phys 2018, 20 (29), 19614-19624
33. Chiu, C. C.; Tsai, S. T.; Hsu, P. J.; Huynh, H. T.; Chen, J. L.; Phan, H. T.; Huang, S. P.; Lin, H. Y.; Kuo, J. L.; Ni, C. K. Unexpected Dissociation Mechanism of Sodiated NAcetylglucosamine and N Acetylgalactosamine. J Phys Chem A 2019, 123 (16), 3441-3453
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36. Tsai, S. T.; Liew, C. Y.; Hsu, C.; Huang, S. P.; Weng, W. C.; Kuo, Y. H.; Ni, C. K. Automatically Full Glycan Structural Determination with Logically Derived Sequence Tandem Mass Spectrometry. ChemBioChem. 2019, 20, 2351-2359
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References (Chapter 8)

1. Pabst, M.; Bondili, J. S.; Stadlmann, J.; Mach, L.; Altmann, F. Mass + Retention Time = Structure: A Strategy for the Analysis of N-Glycans by Carbon Lc-Esi-Ms and Its Application to Fibrin N-Glycans. Anal Chem 2007, 79 (13), 5051-5057
2. Aldredge, D.; An, H. J.; Tang, N.; Waddell, K.; Lebrilla, C. B. Annotation of a Serum NGlycan Library for Rapid Identification of Structures. J Proteome Res 2012, 11 (3), 1958-1968
3. Pabst, M.; Grass, J.; Toegel, S.; Liebminger, E.; Strasser, R.; Altmann, F. Isomeric Analysis of Oligomannosidic N-Glycans and Their Dolichol-Linked Precursors. Glycobiology 2012, 22 (3), 389-399
4. Abrahams, J. L.; Campbell, M. P.; Packer, N. H. Building a Pgc-Lc-Ms N-Glycan Retention Library and Elution Mapping Resource. Glycoconj J 2018, 35 (1), 15-29
5. Weng, W. C.; Liao, H. E.; Huang, S. P.; Tsai, S. T.; Hsu, H. C.; Liew, C. Y.; Gannedi, V.; Hung, S. C.; Ni, C. K. Unusual Free Oligosaccharides in Human Bovine and Caprine Milk. Sci Rep 2022, 12 (1), 10790 10790
6. Li, Q.; Xie, Y.; Wong, M.; Barboza, M.; Lebrilla, C. B. Comprehensive Structural Glycomic Characterization of the Glycocalyxes of Cells and Tissues. Nat Protoc 2020, 15 (8), 2668-2704
7. Liew, C. Y.; Luo, H. S.; Yang, T. Y.; Hung, A. T.; Magoling, B. J. A.; Lai, C. P.; Ni, C. K. Identification of the High Mannose N-Glycan Isomers Undescribed by Conventional Multicellular Eukaryotic Biosynthetic Pathways. Anal Chem 2023, 95 (23), 8789-8797
8. Yang, M.; Wei, M.; Wang, C.; Lu, Y.; Jin, W.; Gao, X.; Li, C.; Wang, L.; Huang, L.; Wang, Z. Separation and Preparation of N-Glycans Based on Ammonia-Catalyzed Release Method. Glycoconj J 2020, 37 (2), 165-174
9. Liew, C. Y.; Chen, J. L.; Ni, C. K. Electrospray Ionization in-Source Decay of N-Glycans and the Effects on N-Glycan Structural Identification. Rapid Commun Mass Spectrom 2022, 36 (18), e9352
10. Chen, J. L.; Nguan, H. S.; Hsu, P. J.; Tsai, S. T.; Liew, C. Y.; Kuo, J. L.; Hu, W. P.; Ni, C. K. Collision-Induced Dissociation of Sodiated Glucose and Identification of Anomeric Configuration. Phys Chem Chem Phys 2017, 19 (23), 15454-15462
11. Huynh, H. T.; Phan, H. T.; Hsu, P. J.; Chen, J. L.; Nguan, H. S.; Tsai, S. T.; Roongcharoen, T.; Liew, C. Y.; Ni, C. K.; Kuo, J. L. Collision-Induced Dissociation of Sodiated Glucose, Galactose, and Mannose, and the Identification of Anomeric Configurations. Phys Chem Chem Phys 2018, 20 (29), 19614-19624
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dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/88635-
dc.description.abstract碳水化合物在生活中具有多種功能,它與蛋白質和去氧核糖核酸等其他生物大分子一樣重要。但是,我們對碳水化合物的瞭解遠遠落後於我們對蛋白質和核酸的瞭解相比。這主要是因為碳水化合物的結構分析是非常具有挑戰性。質譜法是一種高度靈敏的分析工具,適用於分析生物大分子。大多數常用的質譜法涉及碳水化合物的衍生化或僅識別碳水化合物結構的一部分。為了開發一種通用且方便使用的質譜法以用於確定碳水化合物的一級結構,我們開發了一種新的質譜法來識別未衍生化的寡糖的結構。這種方法,稱爲邏輯演繹序列串聯質譜法(LODES/MSn ),可以提供鎖鏈結構,異頭構型,單醣成分和分支位置。LODES/MSn 使用鈉離子加合物的低能量碰撞誘導解離 (CID),從而能夠裂解選擇性化學鍵,這是為後續 CID 識別結構決定性碎片離子的合理解離序列,並且特別是製備了雙醣 CID譜的數據庫。這方法首先應用在各種標準寡糖,以證明方法的準確性。然後應用在從牛蛋白質、大豆蛋白、人乳腺上皮細胞中提取的 N-聚醣和高甘露糖 N-聚醣和人類乳腺癌。zh_TW
dc.description.abstractCarbohydrates have various functions in life, they are as important as other classes of macrobiomolecules such as protein and DNA. However, our understanding of carbohydrates is far lagged behind compared to what we have learned protein and DNA. This is mainly because the structural analysis of carbohydrates is challenging. Mass spectrometry is highly sensitive and a robust analytical tool for macro-biomolecule analysis. Most of the commonly used mass spectrometry-based methods involve the derivatization of carbohydrates or only identify part of the carbohydrate structure. With the aim to develop a universal yet user friendly mass spectrometry-based method to determine the primary structure of carbohydrates/glycans, we developed a new method for complete structural identification of underivatized oligosaccharides. This method, logically derived sequence tandem mass spectrometry (LODES/MSn), can provide assignments of linkages, anomeric configurations, monosaccharide constituents, and branch locations. LODES/MSn entails low-energy collision induced dissociation (CID) of sodium ion adducts that enable the cleavage of selective chemical bonds, a logical procedure to identify structurally decisive fragment ions for subsequent CID, and the specially prepared disaccharide CID spectrum databases. This method was first applied to determine the structures of various types of standard oligosaccharides as a proof of concept. Then, we applied LODES/MSn to structural assignment of sialylated oligosaccharides, N-glycans, and high mannose N-glycans extracted from bovine whey proteins, soybean proteins, human mammary epithelial cells, and human breast carcinoma.en
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dc.description.tableofcontentsTable of Contents
Ph.D Thesis Acceptance Certificate i
Acknowledgment ii
Abstract iii
摘要 iv
Table of Figures x
Table of Tables xviii
Chapter 1 1
Carbohydrates 1
1.1 Introduction 1
1.2 The Structural Complexity of Carbohydrate 2
1.3 Carbohydrate and Life 7
N-glycans 8
1.4 Gaps in Existing Knowledge 9
1.5 Summary 11
1.6 References 13
1.7 Appendix 1 14
Chapter 2 15
Literature Review 15
2.1 Primary Structure Analysis of Glycans 15
2.2 Released Glycans 17
2.2.1 Enzymatic Releases 17
2.2.2 Chemical Release 18
2.3 Methods for the Structural Determination of Glycans 19
2.3.1 Matrix-Assisted Laser Desorption Ionization Mass Spectrometry (MALDI-MS) 19
2.3.2 Electrospray Ionization Mass Spectrometry (ESI-MS) 20
2.3.3 Monosaccharide Analysis 20
2.3.4 Linkage or Methylation Analysis 22
2.3.5 Negative Ions Mass Spectrometry 25
2.3.6 Reductive aminated glycans 26
2.3.7 Reduced Glycans 27
2.4 Glycan Profiling and Glycan MS Libraries 27
2.5 Enzyme Digestion and MS 28
2.6 Nuclear Magnetic Resonance (NMR) Spectroscopy 30
2.7 References 32
Chapter 3 36
Logically Derived Sequence Tandem Mass spectrometry (LODES/MSn) 36
3.1 Introduction 36
3.2 Experiment Methods and Instruments 37
3.2.1 CID Mechanisms of Carbohydrate with Sodium Ion Adduct 37
3.2.2 Lithium Ion Adducts of Monosaccharide 48
3.3 LODES Scheme in LODES/MSn 50
3.3.1 LODES/MSn for Reducing Hexose trisaccharides 52
3.3.2 LODES/MSn for Reducing Hexose Trisaccharides with Lithium Adducts 57
3.4 Summary 60
3.5 References 62
3.6 Appendix 1 63
Chapter 4 64
The Memories of Carbohydrate Fragments in Collision-Induced Dissociation 64
4.1 About This Chapter 64
4.2 Introduction 65
4.3 Experimental Method 69
4.4 Results and Discussion 71
4.5 Conclusion 96
4.6 References 97
Chapter 5 100
Generation and Characterization of Side-Reaction Products in N-glycan Release by Ammonia-Catalyzed Reaction 100
5.1 About This Chapter 100
5.2 Introduction 101
5.3 Experimental Methods 103
5.4 Results and Discussion 105
5.4.1 N-glycan isomerization in ammonia solution 105
5.4.2 HexNAc at Reducing End of N-glycans After Isomerization is ManNAc 107
5.4.3 A Simple Method to Differentiate GlcNAc and ManNAc at the Reducing End of Nglycans 113
5.5 Conclusion 116
5.6 References 118
Chapter 6 121
Structural Determination of Oligosaccharide Isomers in Glycosphingolipids Using Logically Derived Sequence Tandem Mass Spectrometry 121
6.1 About This Chapter 121
6.2 Introduction 122
6.3 Materials and Methods 123
6.3.1 Source of materials 123
6.3.2 Nanoelectrospray mass spectra 124
6.4 Results and Discussions 124
6.4.1 GM1b 126
6.4.2 GM1a 142
6.4.3 LSTa and LSTc 143
6.5 Discussion 156
6.6 References 158
Chapter 7 160
Identification of the High Mannose N-glycan Isomers Undescribed by Current Multicellular Eukaryotic Biosynthetic Pathways 160
7.1 About This Chapter 160
7.2 Introduction 161
7.3 Experimental Methods 164
7.3.1 Source of materials 164
7.3.2 Extraction of Membrane Proteins from Human Cell Lines 165
7.3.3 Extraction of N-glycans from Various Biological Samples 166
7.3.4 Separation of N-glycan Isomers 166
7.3.5 MSn Mass Spectrometry 167
7.3.6 Enzyme Digestion 168
7.4 Results and Discussions 169
7.4.1 Databases of MannGlcNAc2 (n=5, 6, 7) isomers 169
7.4.2 High Mannose N-glycans of Various Biological Samples 212
7.5 Conclusions 227
7.6 References 228
Chapter 8 232
Chromatograms and Mass Spectra of High Mannose and Paucimannose N-glycans for Rapid Isomer Identification 232
8.1 About This Chapter 232
8.2 Introduction 233
8.3 Experimental Methods 233
8.3.1 Sources of materials 233
8.3.2 N-glycans Released through an Ammonia-Catalyzed Reaction 234
8.3.3 N-glycans Released from Soybean Proteins Using PNGase F 235
8.3.4 N-glycans Released from Human Cell Lines 235
8.3.5 Degradation of Large N-glycan by Enzymes 235
8.3.6 Two-Dimensional HPLC Separation 236
8.3.7 Mass Spectrometry 237
8.4 Results and Discussion 238
8.4.1 Construction of chromatogram and CID MSn mass spectrum database 238
8.4.2 Applications to Determine the High Mannose N-glycans Extracted from Various Biological Samples 268
8.5 Conclusions 274
8.6 References 275
Chapter 9 278
Conclusion and Future Perspective 278
9.1 Conclusion 278
9.2 Limitation of LODES/MSn 281
9.3 Future Perspective 281
-
dc.language.isoen-
dc.subject醣結構鑒定zh_TW
dc.subject質譜zh_TW
dc.subject邏輯演繹序列串聯質譜法zh_TW
dc.subjectLODES/MSnen
dc.subjectCarbohydratesen
dc.subjectMass Spectrometryen
dc.subjectStructure Determinationen
dc.title使用邏輯演繹序列串聯質譜法鑑定碳水化合物的結構zh_TW
dc.titleStructural Determination of Carbohydrates by Using Logically Derived Sequence Tandem Mass Spectrometry (LODES/MSn)en
dc.typeThesis-
dc.date.schoolyear111-2-
dc.description.degree博士-
dc.contributor.oralexamcommittee邱繼輝;余慈顏;王正中;洪上程;林俊成;方俊民zh_TW
dc.contributor.oralexamcommitteeKay-Hooi Khoo;Tsyr-Yan Yu;Cheng-Chung Wang;Shang-Cheng Hung;Chun-Cheng Lin;Jim-Min Fangen
dc.subject.keyword醣結構鑒定,質譜,邏輯演繹序列串聯質譜法,zh_TW
dc.subject.keywordCarbohydrates,Mass Spectrometry,Structure Determination,LODES/MSn,en
dc.relation.page282-
dc.identifier.doi10.6342/NTU202302664-
dc.rights.note未授權-
dc.date.accepted2023-08-08-
dc.contributor.author-college工學院-
dc.contributor.author-dept分子科學與技術國際研究生博士學位學程-
顯示於系所單位:分子科學與技術國際研究生博士學位學程

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