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完整後設資料紀錄
DC 欄位 | 值 | 語言 |
---|---|---|
dc.contributor.advisor | 鍾嘉綾(Chia-Lin Chung) | |
dc.contributor.author | Shang-Huan Chiang | en |
dc.contributor.author | 江尚桓 | zh_TW |
dc.date.accessioned | 2023-03-19T22:15:27Z | - |
dc.date.copyright | 2022-09-26 | |
dc.date.issued | 2022 | |
dc.date.submitted | 2022-09-22 | |
dc.identifier.citation | 張義璋。2003。台灣水稻病害之綜合管理。台灣作物病蟲害綜合管理研討會專刊 106: 39-60。 Agrawal, G. K., Rakwal, R., Jwa, N. S., and Agrawal, V. P. 2001. Signaling molecules and blast pathogen attack activates rice OsPR1a and OsPR1b genes: a model illustrating components participating during defence/stress response. Plant Physiology and Biochemistry 39(12): 1095-1103. Akagi, A., Fukushima, S., Okada, K., Jiang, C. J., Yoshida, R., Nakayama, A., Shimono, M., Sugano, S., Yamane, H., and Takatsuji, H. 2014. WRKY45-dependent priming of diterpenoid phytoalexin biosynthesis in rice and the role of cytokinin in triggering the reaction. Plant Molecular Biology 86(1): 171-183. Anders, S., Pyl, P. T., and Huber, W. 2015. HTSeq—a Python framework to work with high-throughput sequencing data. Bioinformatics 31(2): 166-169. Apweiler, R., Bairoch, A., Wu, C. H., Barker, W. C., Boeckmann, B., Ferro, S., Gasteiger, E., Huang, H., Lopez, R., Magrane, M., Martin, M. J., Natale, D. A., O'Donovan, C., Redaschi, N., and Yeh, L. S. 2004. UniProt: the universal protein knowledgebase. Nucleic Acids Research 32(suppl_1): D115-D119. Bari, R., and Jones, J. D. 2009. Role of plant hormones in plant defence responses. Plant Molecular Biology 69(4): 473-488. Barna, B., Fodor, J., Harrach, B. D., Pogány, M., and Király, Z. 2012. The Janus face of reactive oxygen species in resistance and susceptibility of plants to necrotrophic and biotrophic pathogens. Plant Physiology and Biochemistry 59: 37-43. Biswas, S., Zhang, D., and Shim, J. 2021. CRISPR/Cas systems: Opportunities and challenges for crop breeding. Plant Cell Reports 40(6): 979-998. Bolger, A. M., Lohse, M., and Usadel, B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics, 30(15): 2114-2120. Cao, H., Glazebrook, J., Clarke, J.D., Volko, S., and Dong, X. 1997. The Arabidopsis NPR1 gene that controls systemic acquired resistance encodes a novel protein containing ankyrin repeats. Cell 88: 57–63. Carter, L. L. A., Leslie, J. F., and Webster, R. K. 2008. Population structure of Fusarium fujikuroi from California rice and water grass. Phytopathology 98: 992-998. Chang, L. 2021. The role of plant A20/AN1 protein in salicylic acid-mediated antiviral immunity and RNA interference (Doctoral dissertation). National Chung Hsing University. Taiwan. Chang, L., Chang, H. H., Chang, J. C., Lu, H. C., Wang, T. T., Hsu, D. W., Tzean, Y., Cheng, A. P., Chiu, Y. S., and Yeh, H. H. 2018. Plant A20/AN1 protein serves as the important hub to mediate antiviral immunity. PLoS pathogens 14(9): e1007288. Chang, L., Chang, H. H., Chiu, Y. S., Chang, J. C., Hsu, D. W., Tzean, Y., Cheng, A. P., Lu, H. C., and Yeh, H. H. 2019. Plant A20/AN1 proteins coordinate different immune responses including RNAi pathway for antiviral immunity. Biorxiv 622696. Chang, L., Tzean, Y., Hsin, K. T., Lin, C. Y., Wang, C. N., and Yeh, H. H. 2022. Stress associated proteins coordinate the activation of comprehensive antiviral immunity in Phalaenopsis orchids. New Phytologist 233(1): 145-155. Chen, K., Wang, Y., Zhang, R., Zhang, H., & Gao, C. 2019. CRISPR/Cas genome editing and precision plant breeding in agriculture. Annual Review of Plant Biology 70(1): 667-697. Chen, Y. C. 2019. Development of Kaohsiung 145 multiline rice varieties for blast resistance (Master’s thesis). National Taiwan University. Taiwan. Chen, Z., Iyer, S., Caplan, A., Klessig, D. F., and Fan, B. 1997. Differential accumulation of salicylic acid and salicylic acid-sensitive catalase in different rice tissues. Plant Physiology 114(1): 193-201. Chisholm, S. T., Coaker, G., Day, B., and Staskawicz, B. J. 2006. Host-microbe interactions: shaping the evolution of the plant immune response. Cell 124(4): 803-814. Chow, C. N., Lee, T. Y., Hung, Y. C., Li, G. Z., Tseng, Liu, Y. H., Kuo, P. L., Zheng, H. Q., and Chang. W. C., 2019. PlantPAN3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants. Nucleic Acids Research 47(D1): D1155-D1163. Christian, M., Cermák, T., Doyle, E. L., Schmidt, C., Zhang, F., Aaron, H., Bogdanove, A. J., and Voytas, D. F. 2010. Targeting DNA double-strand breaks with TAL effector nucleases. Genetics 186: 757–61 Daw, B. D., Zhang, L. H., and Wang, Z. Z. 2008. Salicylic acid enhances antifungal resistance to Magnaporthe grisea in rice plants. Australasian Plant Pathology 37(6): 637-644. Dean, R., Van Kan, J.A.L., Pretorius, Z.A., Hammond-Kosack, K.E., Di Pietro, A., Spanu, P.D., Rudd, J.J., Dickman, M., Kahmann, R., Ellis, J. and Foster, G.D. 2012. The Top 10 fungal pathogens in molecular plant pathology. Molecular Plant Pathology 13(4): 414-430. Desjardins, A. E., Plattner, R. D., and Nelson, P. E. 1997. Production of fumonisin B (inf1) and moniliformin by Gibberella fujikuroi from rice from various geographic areas. Applied and Environmental Microbiology 63: 1838-1842. Dhatterwal, P., Basu, S., Mehrotra, S., and Mehrotra, R. 2019. Genome wide analysis of W-box element in Arabidopsis thaliana reveals TGAC motif with genes down regulated by heat and salinity. Scientific Reports 9(1): 1-8. Dixit, V. M., Green, S., Sarma, V., Holzman, L. B., Wolf, F. W., O'Rourke, K., Ward, P. A., Prochownik, E. V., and Marks, R. M. 1990. Tumor necrosis factor-alpha induction of novel gene products in human endothelial cells including a macrophage-specific chemotaxin. Journal of Biological Chemistry 265(5): 2973-2978. Dobin, A., Davis, C.A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M. and Gingeras, T.R. 2013. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29(1): 15-21. Dutta, T. K., Ganguly, A. K., and Gaur, H. S. 2012. Global status of rice root-knot nematode, Meloidogyne graminicola. African Journal of Microbiology Research 6(31): 6016-6021. Gaffney, T., Friedrich, L., Vernooij, B., Negrotto, D., Nye, G., Uknes, S., Ward, E., Kessmann, H., and Ryals, J. 1993. Requirement of salicylic acid for the induction of systemic acquired resistance. Science 261(5122): 754-756. Gao, Y., Li, Z., Yang, C., Li, G., Zeng, H., Zhang, Y., and Yang, X. 2021. Pseudomonas syringae activates ZAT18 to inhibit SA accumulation by repressing EDS1 transcript for bacterial infection. New Phytologist 233: 1274-1288 Gianessi, L. P. 2014. Importance of pesticides for growing rice in South and South East Asia. International Pesticide Benefit Case Study 108: 30-33. Giri, J., Dansana, P. K., Kothari, K. S., Sharma, G., Vij, S., and Tyagi, A. K. 2013. SAPs as novel regulators of abiotic stress response in plants. Bioessays 35(7): 639-648. Giri, J., Vij, S., Dansana, P. K., and Tyagi, A. K. 2011. Rice A20/AN1 zinc‐finger containing stress‐associated proteins (SAP1/11) and a receptor‐like cytoplasmic kinase (OsRLCK253) interact via A20 zinc‐finger and confer abiotic stress tolerance in transgenic Arabidopsis plants. New Phytologist 191(3): 721-732. Gonzalez-Bosch, C. 2018. Priming plant resistance by activation of redox-sensitive genes. Free Radical Biology and Medicine 122: 171-180. Gupta, R., Min, C. W., Son, S., Lee, G. H., Jang, J. W., Kwon, S. W., Park, S. R., and Kim, S. T. 2022. Comparative proteome profiling of susceptible and resistant rice cultivars identified an arginase involved in rice defense against Xanthomonas oryzae pv. oryzae. Plant Physiology and Biochemistry 171: 105-114. Hibino, H. 1996. Biology and epidemiology of rice viruses. Annual Review of Phytopathology 34(1): 249-274. Hickman, R., Mendes, M. P., Verk, M. C. V., Dijken, A. J. V., Sora, J. D., Denby, K., Pieterse C. M. J., and Wees, S. C. V. 2019. Transcriptional dynamics of the salicylic acid response and its interplay with the jasmonic acid pathway. BioRxiv 742742. Hill, S. B. 1990. Cultural methods of pest, primarily insect, control. In Proceedings of the Annual Meeting of the Canadian Pest Management Society (Vol. 36, pp. 35-49). Hymowitz, S. G., and Wertz, I. E. 2010. A20: from ubiquitin editing to tumour suppression. Nature Reviews Cancer 10(5): 332-341. Hu, J., Huang, J., Xu, H., Wang, Y., Li, C., Wen, P., You, X., Zhang, X., Pan, G., Li, Q., Zhang, H., He, J., Wu, H., Jiang, L., Wang, H., Liu, Y., and Wan, J. 2020. Rice stripe virus suppresses jasmonic acid-mediated resistance by hijacking brassinosteroid signaling pathway in rice. PLoS pathogens 16(8): e1008801. International Rice Research Institute. 2013. Philippines. http://irri.org/ Jain, P., Singh, P. K., Kapoor, R., Khanna, A., Solanke, A. U., Krishnan, S. G., Singh, A. K., Sharma, V., and Sharma, T. R. 2017. Understanding host-pathogen interactions with expression profiling of NILs carrying rice-blast resistance Pi9 gene. Frontiers in Plant Science 8: 93. Jain, R. K., Mathur, K. N., & Singh, R. V. 2007. Estimation of losses due to plant parasitic nematodes on different crops in India. Indian Journal of Nematology 37(2): 219-221. Jalili, V., Afgan, E., Gu, Q., Clements, D., Blankenberg, D., Goecks, J., Taylor, J., and Nekrutenko, A. 2020. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update. Nucleic Acids Research 48(14): 8205–8207. Jiang, G., Yin, D., Shi, Y., Zhou, Z., Li, C., Liu, P., Jia, Y., Wang, Y., Liu, Z., Yu, M., Wu, X., Zhai, W., and Zhu, L. 2020. OsNPR3.3-dependent salicylic acid signaling is involved in recessive gene xa5-mediated immunity to rice bacterial blight. Scientific Reports 10(1): 1-14. Jones, J. D., and Dangl, J. L. 2006. The plant immune system. Nature 444(7117): 323-329. Kang, M., Fokar, M., Abdelmageed, H., and Allen, R. D. 2011. Arabidopsis SAP5 functions as a positive regulator of stress responses and exhibits E3 ubiquitin ligase activity. Plant Molecular Biology 75(4): 451-466. Kanneganti, V., and Gupta, A. K. 2008. Overexpression of OsiSAP8, a member of stress associated protein (SAP) gene family of rice confers tolerance to salt, drought and cold stress in transgenic tobacco and rice. Plant Molecular Biology 66(5): 445-462. Kanz, C., Aldebert, P., Althorpe, N., Baker, W., Baldwin, A., Bates, K., Browne, P., Broek A. V. D., Castro, M., Cochrane, G., Duggan, K., Eberhardt, R., Faruque, N., Gamble, J., Diez, F. G., Harte, N., Kulikova, T., Lin, Q., Lombard, V., Lopez, R., Mancuso, R., McHale, M., Nardone, F., Silventoinen, V., Sobhany, S., Stoehr, P., Tuli, M. A., Tzouvara, K., Vaughan, R., Wu, D., Zhu, W., and Apweiler, R. 2005. The EMBL nucleotide sequence database. Nucleic Acids Research 33(suppl_1), D29-D33. Katoh, K., Rozewicki, J., and Yamada, K. D. 2019. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20(4): 1160-1166. Kaur, A., Pati, P. K., Pati, A. M., and Nagpal, A. K. 2017. In-silico analysis of cis-acting regulatory elements of pathogenesis-related proteins of Arabidopsis thaliana and Oryza sativa. PloS One 12(9): e0184523. Kempema, L. A., Cui, X., Holzer, F. M., and Walling, L. L. 2007. Arabidopsis transcriptome changes in response to phloem-feeding silverleaf whitefly nymphs. Similarities and distinctions in responses to aphids. Plant Physiology 143(2): 849-865. Kim, S. R., Kim, Y., and An, G. 1993. Identification of methyl jasmonate and salicylic acid response elements from the nopaline synthase (nos) promoter. Plant Physiology 103(1): 97-103. Kim, S. T., Kim, S. G., Agrawal, G. K., Kikuchi, S., and Rakwal, R. 2014. Rice proteomics: a model system for crop improvement and food security. Proteomics 14(4-5): 593-610. Komander, D., and Barford, D. 2008. Structure of the A20 OTU domain and mechanistic insights into deubiquitination. Biochemical Journal 409(1): 77-85. Kouzai, Y., Kimura, M., Watanabe, M., Kusunoki, K., Osaka, D., Suzuki, T., Matsui, H., Yamamoto, M., Ichinose, Y., Toyoda, K., Matsuura, T., Mori, I. C., Hirayama, T., Minami, E., Nishizawa, Y., Inoue, K., Onda, Y., Mochida, K., and Noutoshi, Y. 2018. Salicylic acid‐dependent immunity contributes to resistance against Rhizoctonia solani, a necrotrophic fungal agent of sheath blight, in rice and Brachypodium distachyon. New Phytologist 217(2): 771-783. Kumar, K., Gambhir, G., Dass, A., Tripathi, A. K., Singh, A., Jha, A. K., Yadava, P., Choudhary, M., and Rakshit, S. 2020. Genetically modified crops: current status and future prospects. Planta 251(4): 1-27. Kurowska, M. M., Wiecha, K., Gajek, K., and Szarejko, I. 2019. Drought stress and re-watering affect the abundance of TIP aquaporin transcripts in barley. Plos One 14(12): e0226423. Lamesch, P., Berardini, T. Z., Li, D., Swarbreck, D., Wilks, C., Sasidharan, R., Muller, R., Dreher, K., Alexander, D. L., Garcia-Hernandez, M., Karthikeyan, A. S, Lee, C. H, Nelson, W. D, Ploetz, L., Singh, S., Wensel, A., and Huala, E. 2012. The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic Acids Research 40(D1): D1202-D1210. Lee, Y. H., Kim, Y. J., Moon, J. Y., Kim, H. J., Park, J. M., Hwang, I. S., and Hong, J. K. 2019. Response of two Arabidopsis ecotypes Columbia-0 and Dijon-G to necrotrophic and biotrophic pathogens. Biologia Plantarum 63(63): 654-661. Lefevere, H., Bauters, L., and Gheysen, G. 2020. Salicylic acid biosynthesis in plants. Frontiers in Plant Science 11: 338. Leon-Reyes, A., Spoel, S. H., Lange, E. S. D., Abe, H., Kobayashi, M., Tsuda, S., Millenaar, F. F., Welschen, R. A. M., Ritsema, T., and Pieterse, C. M. J. 2009. Ethylene modulates the role of NONEXPRESSOR OF PATHOGENESIS-RELATED GENES1 in cross talk between salicylate and jasmonate signaling. Plant Physiology 149(4): 1797-1809. Letunic, I., and Bork, P. 2021. Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation. Nucleic Acids Research 49(W1): W293-W296. Li, C., Li, W., Zhou, Z., Chen, H., Xie, C., and Lin, Y. 2020. A new rice breeding method: CRISPR/Cas9 system editing of the Xa13 promoter to cultivate transgene‐free bacterial blight‐resistant rice. Plant Biotechnology Journal 18(2): 313. Li, J. F., Norville, J. E., Aach, J., McCormack, M., Zhang D., Bush, J., Church G. M., and Sheen, J. 2013. Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9. Nature Biotechnology 31: 688–91 Li, J., Li, H., Chen, J., Yan, L., and Xia, L. 2020. Toward precision genome editing in crop plants. Molecular Plant 13(6): 811-813. Lin, C. S., Hsu, C. T., Yang, L. H., Lee, L. Y., Fu, J. Y., Cheng, Q. W., Wu, F. H., Hsiao, H. C., Zhang. Y., Zhang. R., Chang. W. J., Yu, C. T., Wang, W., Liao, L. J., Gelvin, S. B., and Shih, M. C. 2018. Application of protoplast technology to CRISPR/Cas9 mutagenesis: from single‐cell mutation detection to mutant plant regeneration. Plant Biotechnology Journal 16(7): 1295-1310. Liu, H., Ding, Y., Zhou, Y., Jin, W., Xie, K., and Chen, L. L. 2017. CRISPR-P 2.0: an improved CRISPR-Cas9 tool for genome editing in plants. Molecular Plant 10(3), 530-532. Liu, S., Wang, J., Jiang, S., Wang, H., Gao, Y., Zhang, H., Li, D., and Song, F. 2019a. Tomato SlSAP3, a member of the stress‐associated protein family, is a positive regulator of immunity against Pseudomonas syringae pv. tomato DC3000. Molecular Plant Pathology 20(6): 815-830. Liu, S., Yuan, X., Wang, Y., Wang, H., Wang, J., Shen, Z., Gao, Y., Cai, J., Li, D., and Song, F. 2019b. Tomato stress-associated protein 4 contributes positively to immunity against necrotrophic fungus Botrytis cinerea. Molecular Plant-Microbe Interactions 32(5): 566-582. Liu, Y., Sun, T., Sun, Y., Zhang, Y., Radojičić, A., Ding, Y., Tian, H., Huang, X., Lan, S J., Chen, S., Orduna, A.R., Zhang, Jetter, K., Li, X., and Zhang, Y. 2020. Diverse roles of the salicylic acid receptors NPR1 and NPR3/NPR4 in plant immunity. The Plant Cell 32(12): 4002-4016. Love, M. I., Huber, W., and Anders, S. 2014. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology 15(12): 1-21. Ma, X., Zhang, Q., Zhu, Q., Liu, W., Chen, Y., Qiu, R., Wang, B., Yang, Z., Li, H., Lin, Y., Xie, Y., Shen, R., Chen, S., Wang, Z., Chen, Y., Guo, J., Chen, L., Zhao, X., Dong, Z., and Liu, YG. 2015. A robust CRISPR/Cas9 system for convenient, high-efficiency multiplex genome editing in monocot and dicot plants. Molecular Plant 8(8): 1274-1284. Manosalva, P. M., Davidson, R. M., Liu, B., Zhu, X., Hulbert, S. H., Leung, H., and Leach, J. E. 2009. A germin-like protein gene family functions as a complex quantitative trait locus conferring broad-spectrum disease resistance in rice. Plant Physiology 149(1): 286-296. Mantelin, S., Bellafiore, S., and Kyndt, T. 2017. Meloidogyne graminicola: a major threat to rice agriculture. Molecular Plant Pathology 18(1): 3. Mehta, S., Singh, B., Dhakate, P., Rahman, M., and Islam, M. A. 2019. Rice, marker-assisted breeding, and disease resistance. In Disease resistance in crop plants (pp. 83-111). Springer, Cham. Mew, T., Alvarez, A., Leach, J. and Swings, J. 1993. Focus on bacterial blight of rice. Plant Disease 77: 5–12. Mukhopadhyay, A., Vij, S., and Tyagi, A. K. 2004. Overexpression of a zinc-finger protein gene from rice confers tolerance to cold, dehydration, and salt stress in transgenic tobacco. Proceedings of the National Academy of Sciences 101(16): 6309-6314. Mur, L. A., Kenton, P., Atzorn, R., Miersch, O., and Wasternack, C. 2006. The outcomes of concentration-specific interactions between salicylate and jasmonate signaling include synergy, antagonism, and oxidative stress leading to cell death. Plant Physiology 140(1): 249-262. Muthayya, S., Sugimoto, J. D., Montgomery, S., and Maberly, G. F. 2014. An overview of global rice production, supply, trade, and consumption. Annals of the New York Academy of Sciences 1324(1): 7-14. Na, C., Shuanghua, W., Jinglong, F., Bihao, C., Jianjun, L., Changming, C., and Jin, J. 2016. Overexpression of the eggplant (Solanum melongena) NAC family transcription factor SmNAC suppresses resistance to bacterial wilt. Scientific Reports 6(1): 1-20. Nahar, K., Kyndt, T., Vleesschauwer, D. D., Höfte, M., and Gheysen, G. 2011. The jasmonate pathway is a key player in systemically induced defense against root knot nematodes in rice. Plant Physiology 157(1): 305-316. Narasimhamurthy, H. B., Naik, G., Sehgal, M., and Malik, M. 2021. Integrated management of rice diseases. Journal of Advanced Research in Agriculture Science and Technology 4(2): 13-24. Nasir, M., Iqbal, B., Hussain, M., Mustafa, A., and Ayub, M. 2019. Chemical management of bacterial leaf blight disease in rice. Journal of Agricultural Research 57(2): 99-103. Nekrasov, V., Staskawicz, B., Weigel, D., Jones, J.D., and Kamoun, S. 2013. Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease. Nature Biotechnology 31: 691–93 Ngou, B. P. M., Ahn, H. K., Ding, P., and Jones, J. D. 2021. Mutual potentiation of plant immunity by cell-surface and intracellular receptors. Nature 592(7852): 110-115. Nie, H. Z., Zhang, L., Zhuang, H. Q., Shi, W. J., Yang, X. F., Qiu, D. W., and Zeng, H. M. 2019. The secreted protein MoHrip1 is necessary for the virulence of Magnaporthe oryzae. International Journal of Molecular Sciences 20(7): 1643. Ohira, K., Ojima, K., and Fujiwara, A. 1973. Studies on the nutrition of rice cell culture I. A simple, defined medium for rapid growth in suspension culture. Plant and Cell Physiology 14(6): 1113-1121. Ohyanagi, H., Tanaka, T., Sakai, H., Shigemoto, Y., Yamaguchi, K., Habara, T., Fujii, Y., Antonio, B. A., Nagamura, Y., Imanishi, T., Ikeo, K., Itoh, T., Gojobori, T., and Sasaki, T. 2006. The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. Nucleic Acids Research 34(suppl_1): D741-D744. Opipari Jr, A. W., Hu, H. M., Yabkowitz, R., and Dixit, V. M. 1992. The A20 zinc finger protein protects cells from tumor necrosis factor cytotoxicity. Journal of Biological Chemistry 267(18): 12424-12427. Ou, S. H. 1985. Rice Diseases. Kew, Surrey, UK. Commonwealth Mycological Institute. Pan, X., Welti, R., and Wang, X. 2010. Quantitative analysis of major plant hormones in crude plant extracts by high-performance liquid chromatography–mass spectrometry. Nature Protocols 5(6): 986-992. Pennisi, E. 2010. Armed and dangerous. Science, New York, 327(5967): 804-805. Pieterse, C. M., Leon-Reyes, A., Ent, S. V. D., and Wees, S. C M V. 2009. Networking by small-molecule hormones in plant immunity. Nature Chemical Biology 5(5): 308-316. Pooja, K., and Katoch, A. 2014. Past, present and future of rice blast management. Plant Science Today 1(3), 165-173. Pruitt, R. N., Locci, F., Wanke, F., Zhang, L., Saile, S. C., Joe, A., Karelina, D., Hua, C., Fröhlich, K., Wan, W. L., Hu, M., Rao, S., Stolze, S. C., Harzen, A., Gust, A. A., Harter, K., Joosten, M. H. A. J., Thomma, B. P. H. J., Zhou, J. M., Dangl, J. L., Weigel, D., Nakagami, H., Oecking, C., Kasmi, F. I., Parker, J. E., and Nürnberger, T. 2021. The EDS1–PAD4–ADR1 node mediates Arabidopsis pattern-triggered immunity. Nature 598(7881): 495-499. Qaim, M., and Zilberman, D. 2003. Yield effects of genetically modified crops in developing countries. Science 299(5608): 900-902. Rahman, H., Xu, Y. P., Zhang, X. R., and Cai, X. Z. 2016. Brassica napus genome possesses extraordinarily high number of CAMTA genes and CAMTA3 contributes to PAMP triggered immunity and resistance to Sclerotinia sclerotiorum. Frontiers in Plant Science 7: 581. Rombauts, S., Déhais, P., Montagu, M. V., and Rouzé, P. 1999. PlantCARE, a plant cis-acting regulatory element database. Nucleic Acids Research 27(1): 295-296. Roumen, E. C. 1992. Small differential interactions for partial resistance in rice cultivars to virulent isolates of the blast pathogen. Euphytica 64(1): 143-148. Ryals, J. A., Neuenschwander, U. H., Willits, M. G., Molina, A., Steiner, H. Y., and Hunt, M. D. 1996. Systemic acquired resistance. The Plant Cell 8(10): 1809. Saad, R. B., Zouari, N., Ramdhan, W. B., Azaza, J., Meynard, D., Guiderdoni, E., Hassairi, A. 2010. Improved drought and salt stress tolerance in transgenic tobacco overexpressing a novel A20/AN1 zinc-finger “AlSAP” gene isolated from the halophyte grass Aeluropus littoralis. Plant Molecular Biology 72(1): 171-190. Salman, E. K., Ghoniem, K. E., Badr, E. S., and Emeran, A. A. 2022. The potential of dimetindene maleate inducing resistance to blast fungus Magnaporthe oryzae through activating the salicylic acid signaling pathway in rice plants. Pest Management Science 78(2): 633-642. Saremi, H., Ammarellou, A., Marefat, A., and Okhovvat, S. M. 2008. Binam a rice cultivar, resistant for root rot disease on rice caused by Fusarium moniliforme in Northwest, Iran. The Iranian Journal of Botany 4: 383-389. Schwarz, G. 1978. Estimating the dimension of a model. The Annals of Statistics 461-464. Seck, P. A., Diagne, A., Mohanty, S., and Wopereis, M. C. S. 2012. Crops that feed the world 7: Rice. Food Security 4(1): 7–24. Shan, Q., Wang, Y., Li, J., Zhang, Y., Chen, K., Liang, Z., Zhang, K., Liu, J., and Gao, C. 2013. Targeted genome modification of crop plants using a CRISPR-Cas system. Nature Biotechnology 31: 686–88 Shi, J., Gao, H., Wang, H., Lafitte, H. R., Archibald, R. L., Yang, M., Hakimi, S. M., Mo, H., and Habben, J. E. 2017. ARGOS8 variants generated by CRISPR‐Cas9 improve maize grain yield under field drought stress conditions. Plant Biotechnology Journal 15(2): 207-216. Shimono, M., Koga, H., Akagi, A., Hayashi, N., Goto, S., Sawada, M., Kurihara, T., Matsushita, A., Sugano, S., Jiang, C. J., Kaku, H., Inoue, H., and Takatsuji, H. 2012. Rice WRKY45 plays important roles in fungal and bacterial disease resistance. Molecular Plant Pathology 13(1): 83-94. Silverman, P., Seskar, M., Kanter, D., Schweizer, P., Metraux, J. P., and Raskin, I. 1995. Salicylic acid in rice (biosynthesis, conjugation, and possible role). Plant Physiology 108(2): 633-639. Skamnioti, P., and Gurr, S. J. 2009. Against the grain: safeguarding rice from rice blast disease. Trends in Biotechnology 27(3): 141-150. Somvanshi, V. S., Tathode, M., Shukla, R. N., and Rao, U. 2018. Nematode genome announcement: A draft genome for rice root-knot nematode, Meloidogyne graminicola. Journal of Nematology 50(2): 111. Sreewongchai, T., Toojinda, T., Thanintorn, N., Kosawang, C., Vanavichit, A., Tharreau, D., and Sirithunya, P. 2010. Development of elite indica rice lines with wide spectrum of resistance to Thai blast isolates by pyramiding multiple resistance QTLs. Plant Breeding 129(2): 176-180. Sun, Y., Detchemendy, T. W., Pajerowska-Mukhtar, K. M., and Mukhtar, M. S. 2018. NPR1 in JazzSet with pathogen effectors. Trends in Plant Science 23(6): 469-472. Tello-Ruiz, M. K., Jaiswal, P., and Ware, D. 2022. Gramene: A resource for comparative analysis of plants genomes and pathways. In Plant Bioinformatics (pp. 101-131). Humana, New York, NY. Tena, G. 2021. PTI and ETI are one. Nature Plants 7(12): 1527-1527. Tian, H., Wu, Z., Chen, S., Ao, K., Huang, W., Yaghmaiean, H., Sun, T., Xu, F., Zhang, Y., Wang, S., Li, X., and Zhang, Y. 2021. Activation of TIR signalling boosts pattern-triggered immunity. Nature 598(7881): 500-503. Trifinopoulos, J., Nguyen, L. T., Haeseler, A. V., and Minh, B. Q. 2016. W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Research 44(W1): W232-W235. Tsuda, K., Sato, M., Stoddard, T., Glazebrook, J., and Katagiri, F. 2009. Network properties of robust immunity in plants. PLoS Genetics 5(12): e1000772. Tyagi, H., Jha, S., Sharma, M., Giri, J., and Tyagi, A. K. 2014. Rice SAPs are responsive to multiple biotic stresses and overexpression of OsSAP1, an A20/AN1 zinc-finger protein, enhances the basal resistance against pathogen infection in tobacco. Plant Science 225: 68-76. Van Esse, H. P., Reuber, T. L., and van der Does, D. 2020. Genetic modification to improve disease resistance in crops. New Phytologist 225(1): 70-86. Vats, S., Kumawat, S., Kumar, V., Patil, G. B., Joshi, T., Sonah, H., Sharma, T. R., Deshmukh, R. 2019. Genome editing in plants: exploration of technological advancements and challenges. Cells 8(11): 1386. Vij, S., and Tyagi, A. K. 2006. Genome-wide analysis of the stress associated protein (SAP) gene family containing A20/AN1 zinc-finger (s) in rice and their phylogenetic relationship with Arabidopsis. Molecular Genetics and Genomics 276(6): 565-575. Vij, S., and Tyagi, A. K. 2008. A20/AN1 zinc-finger domain-containing proteins in plants and animals represent common elements in stress response. Functional & Integrative Genomics 8(3): 301-307. Wang, Y., Liu, G. J., Yan, X. F., Wei, Z. G., and Xu, Z. R. 2011. MeJA-inducible expression of the heterologous JAZ2 promoter from Arabidopsis in Populus trichocarpa protoplasts. Journal of Plant Diseases and Protection 118(2): 69-74. Wang, J., Zhou, L., Shi, H., Chern, M., Yu, H., Yi, H., He, M., Yin, J., Zhu, X., Li, Y., Li, W., Liu, J., Wang, J., Chen, X., Qing, H., Wang, Y., Liu, G., Wang, W., Li, P., Wu, X., Zhu, L., Zhou, J. M., Ronald, P. C., Li, S., Li, J., and Chen, X. 2018. A single transcription factor promotes both yield and immunity in rice. Science 361(6406): 1026-1028. White, R. F. 1979. Acetylsalicylic acid (aspirin) induces resistance to tobacco mosaic virus in tobacco. Virology 99(2): 410-412. Wingett, S.W., Andrews, S. 2018. FastQ Screen: A tool for multi-genome mapping and quality control. Retrieved from https://www.bioinformatics. babraham.ac.uk/projects/fastqc/ Wright, D. A., Townsend, J. A., Jr, R. J. W., Irwin, P. A., Rajagopal, J., Lonosky, P. M., Hall, B. D., Jondle, M. D., and Voytas, D. F. (2005). High‐frequency homologous recombination in plants mediated by zinc‐finger nucleases. The Plant Journal 44(4): 693-705. Wu, S. J., Zhong, H., Zhou, Y., Zuo, H., Zhou, L. H., Zhu, J. Y., Ji, C. Q., Gu, S. L., Gu M. H., and Liang, G. H. 2009. Identification of QTLs for the resistance to rice stripe virus in the indica rice variety Dular. Euphytica 165(3): 557-565. Xu, Y., Fu, S., Tao, X., and Zhou, X. 2021. Rice stripe virus: Exploring molecular weapons in the arsenal of a negative-sense RNA virus. Annual Review of Phytopathology 59: 351-371. Yang, J., Duan, G., Li, C., Liu, L., Han, G., Zhang, Y., and Wang, C. 2019. The crosstalks between jasmonic acid and other plant hormone signaling highlight the involvement of jasmonic acid as a core component in plant response to biotic and abiotic stresses. Frontiers in Plant Science 10: 1349. Yin, K., and Qiu, J. L. 2019. Genome editing for plant disease resistance: applications and perspectives. Philosophical Transactions of the Royal Society B 374(1767): 20180322. Yuan, M., Jiang, Z., Bi, G., Nomura, K., Liu, M., Wang, Y., Cai, B., Zhou, J. M., Xin, S. Y. He., and Xin, X. F. 2021. Pattern-recognition receptors are required for NLR-mediated plant immunity. Nature 592(7852): 105-109. Yuan, M., Ngou, B. P. M., Ding, P., and Xin, X. F. 2021. PTI-ETI crosstalk: An integrative view of plant immunity. Current Opinion in Plant Biology 62: 102030. Zhai, K., Liang, D., Li, H., Jiao, F., Yan, B., Liu, J., Lei, Z., Huang, L., Gong, X., Wang, X., Miao, J., Wang, Y., Liu, J. Y., Zhang, L., Wang, E., Deng, Y., Wen, C. K., Guo, H., Han, B., and He, Z. 2022. NLRs guard metabolism to coordinate pattern-and effector-triggered immunity. Nature 601(7892): 245-251. Zhang, D., Zhang, Z., Unver, T., and Zhang, B. 2021. CRISPR/Cas: A powerful tool for gene function study and crop improvement. Journal of Advanced Research 29: 207-221. Zhang, W., Zhao, F., Jiang, L., Chen, C., Wu, L., and Liu, Z. 2018. Different pathogen defense strategies in Arabidopsis: more than pathogen recognition. Cells 7(12): 252. Zhao, J., Mejias, J., Quentin, M., Chen, Y., Almeida‐Engler, J. D., Mao, Z., Sun, Q., Liu, Q., Xie, B., Abad, P., Faveryand, B., and Jian, H. 2020. The root‐knot nematode effector MiPDI1 targets a stress‐associated protein (SAP) to establish disease in Solanaceae and Arabidopsis. New Phytologist 228(4): 1417-1430. Zheng, X. Y., Spivey, N. W., Zeng, W., Liu, P. P., Fu, Z. Q., Klessig, D. F., He, S. Y., Dong, X. 2012. Coronatine promotes Pseudomonas syringae virulence in plants by activating a signaling cascade that inhibits salicylic acid accumulation. Cell Host & Microbe 11(6): 587-596. | |
dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/84554 | - |
dc.description.abstract | 生物型及半生物營養型病原菌連年造成水稻產量的嚴重損失,水楊酸 (Salicylic acid, SA) 為調節植物對抗生物及半生物營養性病原菌防禦反應的重要植物荷爾蒙,而過去單子葉和雙子葉作物的研究中,發現植物中特定的逆境相關蛋白 (Stress Associated Proteins, SAPs) 在水楊酸所調節的防禦路徑中扮演重要的調控樞紐。為了提升水稻抗性,本研究擬尋找在水稻中調節水楊酸免疫反應的SAPs。親緣演化分析顯示在水稻18個SAPs (OsSAPs) 中,有兩個SAPs ― OsSAP1與OsSAP11與已知能誘導強抗病能力的阿拉伯芥AtSAP5親緣關係最為相近,且只有上述兩者能在水楊酸處理與稻熱病菌接種後都能被誘導表現。另外分析過去發表的稻熱病菌接種後水稻轉錄組資料也發現OsSAP1與OsSAP11只能在帶有Pi9抗稻熱病基因的抗病近等基因系 (Near Isogenic Line,NIL) 中被誘導基因表現,隨後利用水稻原生植體的瞬時表達功能性分析也顯示過量表現OsSAP1與OsSAP11能誘導水稻水楊酸相關基因包含PR1a (PATHOGENESIS-RELATED PROTEIN 1a) 的表現。本研究也建立了OsSAP1與OsSAP11的Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)、RNA干擾,以及過表達轉基因水稻以利後續分析。總結本研究鑑定參與在水稻水楊酸調控免疫路徑中的逆境相關蛋白,並對未來利用水稻SAPs提升對生物營養或半生物營養型病害的抗性建立了良好的研究基礎。 | zh_TW |
dc.description.abstract | Biotrophic and hemi-biotrophic pathogens cause serious yield loss on rice. Salicylic acid (SA) is an important phytohormone that regulates the defense responses of plants against biotrophic and hemi-biotrophic pathogens. Previous studies have found that Stress-associated proteins (SAPs) serve as an important regulatory hub in the SA-mediated immune pathway in both monocot and dicot plants. To improve rice disease resistance, this study aimed to identify SAPs that regulate SA mediated immune response in rice. Phylogenetic analysis revealed that among 18 rice SAPs (OsSAPs), OsSAP1 and OsSAP11, are the most closely related to Arabidopsis AtSAP5, which can induce strong disease resistance. In addition, only OsSAP1 and OsSAP11 could be induced after SA treatment and Pyricularia oryzae inoculation. Analysis of published transcriptome data of P. oryzae inoculated rice also showed that the expression of OsSAP1 and OsSAP11 can only be induced in resistance near isogenic line (NIL) which carrying the Pi9 resistance gene after P. oryzae inoculation. Moreover, overexpression of OsSAP1 and OsSAP11 in rice protoplast induced the expression of the rice SA-related marker genes, PATHOGENESIS-RELATED PROTEIN 1a (PR1a). In addition, Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR), RNA interference and overexpression transgenic rice lines were generated for detailed functional analysis of OsSAP1 and OsSAP11. In conclusion, this study identified SAPs involved in SA-mediated immunity in rice and can be further used to enhance the resistance of rice against biotrophic or hemi-biotrophic pathogens. | en |
dc.description.provenance | Made available in DSpace on 2023-03-19T22:15:27Z (GMT). No. of bitstreams: 1 U0001-2608202213500800.pdf: 2306619 bytes, checksum: cf8b6b3d1db926476a3ab3d436dfbfe5 (MD5) Previous issue date: 2022 | en |
dc.description.tableofcontents | 摘要 I Abstract II Contents III Contents of tables VI Contents of figures VII Appendix IX Chapter 1. Introduction 1 1.1 Rice diseases and recent management methods 1 1.2 Phytohormone-mediated disease resistance 4 1.3 Stress Associated Proteins 7 1.4 Thesis plan 9 Chapter 2. Materials and Methods 10 2.1 Plant materials and growth condition 10 2.2 Identification of SAPs and further phylogenetic analysis 10 2.3 Measurement of SA concentration in rice 11 2.4 Exogenous sodium salicylate treatment 12 2.5 P. oryzae inoculation 13 2.6 Published RNA-seq data analysis 13 2.7 Generate OsSAP1 and OsSAP11 construct for transgenic rice 14 2.8 Transient overexpression OsSAP1 and OsSAP11 in rice protoplast 17 2.9 RNA extraction and reverse transcription quantitative PCR (RT-qPCR) detection 18 2.10 In silico promoter analysis 18 2.11 Agrobacterium-mediated plant transformation 19 Chapter 3. Results 20 3.1 Identification of stress associated proteins (SAPs) in rice genome 20 3.2 Phylogenetic analysis of SAPs 20 3.3 SA concentration in rice 21 3.4 Sodium salicylate treatment induces expression of OsSAPs 21 3.5 Identification of OsSAP1 induced by Pyricularia oryzae 22 3.6 Using previous published RNA-seq data to verify the expression pattern of OsSAPs after P. oryzae infection 22 3.7 OsSAPs involved in the expression of phytohormone related genes 23 3.8 In silico promoter analysis of OsSAP1 and OsSAP11 24 3.9 Generation of the constructs for OsSAP1 and OsSAP11 transgenic plant 24 Chapter 4. Discussion 26 Evolutionary analysis of SAPs in rice 26 Differential SA concentration in shoots and roots of rice 28 OsSAPs up-regulated by SA and P. oryzae 29 OsSAP1 and OsSAP11 may not only participate in SA-mediated plant immunity but also be involved in JA and ET immune pathway 31 OsSAP11 regulates the expression of OsSAP1 32 Future research direction 32 References 34 Tables 53 Figures 69 Appendix 86 | |
dc.language.iso | en | |
dc.title | 鑑定參與在水楊酸調節免疫路徑之水稻逆境相關蛋白 | zh_TW |
dc.title | Identification of rice stress associated proteins in the salicylic acid-mediated immune pathway | en |
dc.type | Thesis | |
dc.date.schoolyear | 110-2 | |
dc.description.degree | 碩士 | |
dc.contributor.coadvisor | 葉信宏(Hsin-Hung Yeh) | |
dc.contributor.oralexamcommittee | 林乃君(Nai-Chun Lin),張皓巽(Hao-Xun Chang),張立(Chang Li) | |
dc.subject.keyword | 水稻,水楊酸,逆境相關蛋白,稻熱病,轉基因水稻, | zh_TW |
dc.subject.keyword | Rice,Salicylic acid (SA),Stress associated proteins (SAPs),Rice blast,Transgenic rice, | en |
dc.relation.page | 90 | |
dc.identifier.doi | 10.6342/NTU202202852 | |
dc.rights.note | 同意授權(限校園內公開) | |
dc.date.accepted | 2022-09-23 | |
dc.contributor.author-college | 生物資源暨農學院 | zh_TW |
dc.contributor.author-dept | 植物病理與微生物學研究所 | zh_TW |
dc.date.embargo-lift | 2022-09-26 | - |
顯示於系所單位: | 植物病理與微生物學系 |
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