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  1. NTU Theses and Dissertations Repository
  2. 電機資訊學院
  3. 生醫電子與資訊學研究所
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/81244
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dc.contributor.advisor楊東霖(T-Tony Yang)
dc.contributor.authorJia-Hui Wangen
dc.contributor.author王嘉會zh_TW
dc.date.accessioned2022-11-24T03:38:20Z-
dc.date.available2021-08-04
dc.date.available2022-11-24T03:38:20Z-
dc.date.copyright2021-08-04
dc.date.issued2021
dc.date.submitted2021-08-02
dc.identifier.citationAbbe, E. (1873). 'Beiträge zur Theorie des Mikroskops und der mikroskopischen Wahrnehmung.' Archiv für mikroskopische Anatomie 9(1): 413-468. Balzarotti, F., et al. (2017). 'Nanometer resolution imaging and tracking of fluorescent molecules with minimal photon fluxes.' Science 355(6325): 606-612. Bates, M., et al. (2007). 'Multicolor super-resolution imaging with photo-switchable fluorescent probes.' Science 317(5845): 1749-1753. Bates, M., et al. (2008). 'Super-resolution microscopy by nanoscale localization of photo-switchable fluorescent probes.' Current opinion in chemical biology 12(5): 505-514. Betzig, E., et al. (2006). 'Imaging intracellular fluorescent proteins at nanometer resolution.' Science 313(5793): 1642-1645. Butkevich, A. N., et al. (2018). 'Triarylmethane fluorophores resistant to oxidative photobluing.' Journal of the American Chemical Society 141(2): 981-989. Choquet, D. (2014). 'The 2014 Nobel Prize in Chemistry: a large-scale prize for achievements on the nanoscale.' Neuron 84(6): 1116-1119. Dempsey, G. T., et al. (2011). 'Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging.' Nature methods 8(12): 1027-1036. Dertinger, T., et al. (2009). 'Fast, background-free, 3D super-resolution optical fluctuation imaging (SOFI).' Proceedings of the National Academy of Sciences 106(52): 22287-22292. Fölling, J., et al. (2008). 'Fluorescence nanoscopy by ground-state depletion and single-molecule return.' Nature methods 5(11): 943-945. Gómez-García, P. A., et al. (2018). 'Excitation-multiplexed multicolor superresolution imaging with fm-STORM and fm-DNA-PAINT.' Proceedings of the National Academy of Sciences 115(51): 12991-12996. Gustafsson, M. G. (2000). 'Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy.' Journal of microscopy 198(2): 82-87. Heilemann, M., et al. (2008). 'Subdiffraction‐resolution fluorescence imaging with conventional fluorescent probes.' Angewandte Chemie International Edition 47(33): 6172-6176. Hell, S. W. and J. Wichmann (1994). 'Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy.' Optics letters 19(11): 780-782. Helmerich, D. A., et al. (2021). 'Photoblueing of organic dyes can cause artifacts in super-resolution microscopy.' Nature methods 18(3): 253-257. Hess, S. T., et al. (2006). 'Ultra-high resolution imaging by fluorescence photoactivation localization microscopy.' Biophysical journal 91(11): 4258-4272. Huang, B., et al. (2010). 'Breaking the diffraction barrier: super-resolution imaging of cells.' Cell 143(7): 1047-1058. Huang, B., et al. (2008). 'Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy.' Science 319(5864): 810-813. Khater, I. M., et al. (2020). 'A review of super-resolution single-molecule localization microscopy cluster analysis and quantification methods.' Patterns 1(3): 100038. Klein, T., et al. (2014). 'Eight years of single-molecule localization microscopy.' Histochemistry and cell biology 141(6): 561-575. Moerner, W. E. and L. Kador (1989). 'Optical detection and spectroscopy of single molecules in a solid.' Physical review letters 62(21): 2535. Ovesný, M., et al. (2014). 'ThunderSTORM: a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging.' Bioinformatics 30(16): 2389-2390. Rust, M. J., et al. (2006). 'Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM).' Nature methods 3(10): 793-796. Schnitzbauer, J., et al. (2017). 'Super-resolution microscopy with DNA-PAINT.' Nature protocols 12(6): 1198-1228. Shroff, H., et al. (2008). 'Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics.' Nature methods 5(5): 417-423. Tam, J., et al. (2014). 'Cross-talk-free multi-color STORM imaging using a single fluorophore.' PloS one 9(7): e101772. Thompson, R. E., et al. (2002). 'Precise nanometer localization analysis for individual fluorescent probes.' Biophysical journal 82(5): 2775-2783. Van de Linde, S., et al. (2011). 'Direct stochastic optical reconstruction microscopy with standard fluorescent probes.' Nature protocols 6(7): 991-1009. Wade, O. K., et al. (2019). '124-Color super-resolution imaging by engineering DNA-PAINT blinking kinetics.' Nano letters 19(4): 2641-2646. Wegel, E., et al. (2016). 'Imaging cellular structures in super-resolution with SIM, STED and Localisation Microscopy: A practical comparison.' Scientific reports 6(1): 1-13. Yildiz, A., et al. (2003). 'Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization.' Science 300(5628): 2061-2065. Zhao, T., et al. (2015). 'A user-friendly two-color super-resolution localization microscope.' Optics express 23(2): 1879-1887.
dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/81244-
dc.description.abstract單分子定位顯微鏡 (SMLM) 技術的最新發展使研究人員能夠在納米尺度上研究大分子結構。超分辨率技術的分辨率通過有效地銳化點擴散函數打破了光學顯微鏡的衍射極限。 單分子定位顯微鏡在眾多超解析方法中實現了十至二十納米的卓越分辨率,並從包含數十萬個定位的點雲數據集重建了不受到衍射限制的超解析影像。能夠對蛋白質進行共定位分析的多色光學顯微分析對研究者來說至關重要。儘管已經有許多用於多色成像的方法被提出,但其中大多數都需要多個激發波長和收光波段,通過連續採集或光譜分解。 目前尚未有技術可以在單一激發波長和收光波段,同時獲得多色的無色像差超解析影像。本研究提出了一種基於dSTORM(direct stochastic optical reconstruction microscopy)上的共時雙色成像策略,具有單個收光波段,可最效地減少色像差。本研究闡述了 Alexa fluor 647 和 ATTO647N 的光動力學,並開發了一種數據驅動的螢光染料分辨方法。此外,這種方法可以被應用於任何 dSTORM 成像系統,而無需額外的光學組件來分離重疊光譜內的螢光團。zh_TW
dc.description.provenanceMade available in DSpace on 2022-11-24T03:38:20Z (GMT). No. of bitstreams: 1
U0001-2807202111000600.pdf: 3592982 bytes, checksum: b3070c0426ba98d7d04ab2e4f0c6bc1e (MD5)
Previous issue date: 2021
en
dc.description.tableofcontentsCONTENTS 審定書 i 致謝 ii 中文摘要 iii ABSTRACT iv CONTENTS v LIST OF FIGURES viii LIST OF TABLES xi Chapter 1 Introduction 1 1.1 Background 1 1.2 Literature review 2 1.2.1 Resolution limitation of optical microscopy 2 1.2.2 Superresolution methods 3 1.2.3 dSTORM superresolution technique 5 1.2.4 Multicolor SMLM imaging 7 1.3 Research motivation 9 1.4 Thesis structure 11 Chapter 2 Experimental Design 12 2.1 Characterization of far-red dye candidates 12 2.1.1 Evaluation of fluorophore candidates 12 2.1.2 AF647 and ATTO647N as fluorophore candidates 14 2.2 Quantification of photo-switching kinetics of fluorophores 19 2.2.1 Switching kinetics of AF647 and ATTO647N 19 2.2.2 Fast Fourier transfer of Switching kinetics 25 Chapter 3 Materials and Methods 30 3.1 Cell culture 30 3.2 Immunostaining 30 3.3 dSTORM imaging 32 3.4 Data analysis 34 Chapter 4 Results and Discussions 38 4.1 Validation of the chromatic aberration-free two-color imaging 38 4.1.1 Fluorophore separation of AF647 and ATTO647N 38 4.1.2 Separation method based on support vector machine (SVM) 40 4.2 Optimization of fluorophore separation 45 4.2.1 On-state and off-state analysis for color separation 45 4.2.2 Separation method based on ensemble forest method 48 4.3 Superresolution imaging of cellular structure 56 4.3.1 dSTORM imaging of Arl13b and Nup98 56 4.3.2 dSTORM imaging of FBF1 and ARL13b 58 4.3.3 dSTORM imaging of FBF1 and Ninein 60 4.4 Discussion 61 Chapter 5 Conclusion 65 Chapter 6 Future work 67 6.1 Multicolor imaging 67 6.2 Image quality improvement 68 Reference 69
dc.language.isoen
dc.subject多色成像zh_TW
dc.subjectdSTORMzh_TW
dc.subject超分辨率zh_TW
dc.subject共時zh_TW
dc.subject無像差zh_TW
dc.subjectsimultaneousen
dc.subjectdSTORMen
dc.subjectmulticolor imagingen
dc.subjectaberration freeen
dc.subjectsuperresolutionen
dc.title共時無色相差雙色單分子定位顯微技術之設計與實驗zh_TW
dc.titleDesign and Experiment for the Chromatic Aberration Free Two-Color Single-Molecule Localization Microscopyen
dc.date.schoolyear109-2
dc.description.degree碩士
dc.contributor.oralexamcommittee黃念祖(Hsin-Tsai Liu),陳奕帆(Chih-Yang Tseng)
dc.subject.keyworddSTORM,超分辨率,共時,無像差,多色成像,zh_TW
dc.subject.keyworddSTORM,superresolution,simultaneous,aberration free,multicolor imaging,en
dc.relation.page83
dc.identifier.doi10.6342/NTU202101837
dc.rights.note同意授權(限校園內公開)
dc.date.accepted2021-08-02
dc.contributor.author-college電機資訊學院zh_TW
dc.contributor.author-dept生醫電子與資訊學研究所zh_TW
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