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| DC 欄位 | 值 | 語言 |
|---|---|---|
| dc.contributor.advisor | 鍾國芳(Kuo-Fang Chung) | |
| dc.contributor.author | Hung Lin | en |
| dc.contributor.author | 林弘 | zh_TW |
| dc.date.accessioned | 2022-11-24T03:09:08Z | - |
| dc.date.available | 2022-02-16 | |
| dc.date.available | 2022-11-24T03:09:08Z | - |
| dc.date.copyright | 2022-02-16 | |
| dc.date.issued | 2022 | |
| dc.date.submitted | 2022-02-11 | |
| dc.identifier.citation | 李宜軒 (2019)。以限制酶位點標定之核酸定序法檢視太平洋構樹之親緣地理。碩士論文。國立台灣大學，臺北市，台灣。 廖声熙、李昆、杨振寅及张春华 (2006)。同年龄构树皮的纤维，化学特性与制浆性能研究。林业科学研究，19，436–440。 邱俊翔 (2019)。臺灣構樹三種基因單倍型族群的生理表現差異。碩士論文。國立屏東科技大學，屏東縣，台灣。 朱祖德 (2007)。試論唐代揚州在中西交通史上的地位。興大歷史學報，18，193–224。 莊嘉瑢 (2021)。以質體基因組重建太平洋構樹的傳播。碩士論文。國立臺灣大學，臺北市，台灣。 郑汉臣、黄宝康、秦路平及张巧艳 (2002)。构树属植物的分布及其生物学特性。中国野生植物资源，21，11–13。 Ahmed, I., P. J. Biggs, P. J. Matthews, L. J. Collins, M. D. Hendy, and P. J. Lockhart. 2012. Mutational dynamics of aroid chloroplast genomes. Genome Biology and Evolution 4: 1316–1323. Albert, T. J., M. N. Molla, D. M. Muzny, L. Nazareth, D. Wheeler, X. Z. Song, T. A. Richmond, C. M. Middle, M. J. Rodesch, C. J. Packard, G. M. Weinstock, and R. A. Gibbs. 2007. Direct selection of human genomic loci by microarray hybridization. Nature Methods 4: 903–905. Alexander, D. H., J. Novembre, and K. Lange. 2009. Fast model-based estimation of ancestry in unrelated individuals. Genome Research 19: 1655–1664. website: https://dalexander.github.io/admixture/index.html. Andrews, S. 2010. FastQC: a quality control tool for high throughput sequence data. website: https://qubeshub.org/resources/fastqc. Avise, J. C. 1994. Molecular markers, natural history and evolution. Springer, Boston, USA. Bade, K. J. 2003. Migration During the Shift from Agrarian to Industrial Societies, Migration in European History, 1-52. Blackwell Pub, Malden, USA. Bai, W. N., W. T. Wang, and D. Y. Zhang. 2014. Contrasts between the phylogeographic patterns of chloroplast and nuclear DNA highlight a role for pollen-mediated gene flow in preventing population divergence in an East Asian temperate tree. Molecular Phylogenetics and Evolution 81: 37–48. Baird, N. A., P. D. Etter, T. S. Atwood, M. C. Currey, A. L. Shiver, Z. A. Lewis, E. U. Selker, W. A. Cresko, and E. A. Johnson. 2008. Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS ONE 3: e3376. Bankevich, A., S. Nurk, D. Antipov, A. A. Gurevich, M. Dvorkin, A. S. Kulikov, V. M. Lesin, S. I. Nikolenko, S. Pham, A. D. Prjibelski, A. V. Pyshkin, A. V. Sirotkin, N. Vyahhi, G. Tesler, M. A. Alekseyev, and P. A. Pevzner. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. Journal of Computational Biology 19: 455–477. website: https://cab.spbu.ru/software/spades/. Barker, C. 2002. Plate 432. Broussonetia papyrifera. Curtis's Botanical Magazine 19: 8–18. Behr, A. A., K. Z. Liu, G. Liu-Fang, P. Nakka, and S. Ramachandran. 2016. pong: fast analysis and visualization of latent clusters in population genetic data. Bioinformatics 32: 2817–2823. website: https://github.com/ramachandran-lab/pong. Bellwood, P. 1979. Man's conquest of the Pacific: the prehistory of Southeast Asia and Oceania. Oxford University Press, New York, America. Bellwood, P., G. Chambers, M. Ross, and H. C. Hung. 2011. Are ‘cultures’ inherited? Multidisciplinary perspectives on the origins and migrations of Austronesian-speaking peoples prior to 1000 bc. In B. W. Roberts and M. Vander Linden [eds.], Investigating Archaeological Cultures: Material Culture, Variability, and Transmission, 321–354. Springer New York, New York, America. Bolger, A. M., M. Lohse, and B. Usadel. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30: 2114–2120. website: http://www.usadellab.org/cms/?page=trimmomatic. Bosu, P. P., M. M. Apetorgbor, E. E. Nkrumah, and K. P. Bandoh. 2013. The impact of Broussonetia papyrifera (L.) vent. on community characteristics in the forest and forest-savannah transition ecosystems of Ghana. African Journal of Ecology 51: 528–535. Brewer, G. E., J. J. Clarkson, O. Maurin, A. R. Zuntini, V. Barber, S. Bellot, N. Biggs, R. S. Cowan, N. M. J. Davies, S. Dodsworth, S. L. Edwards, W. L. Eiserhardt, N. Epitawalage, S. Frisby, A. Grall, P. J. Kersey, L. Pokorny, I. J. Leitch, F. Forest, and W. J. Baker. 2019. Factors affecting targeted sequencing of 353 nuclear genes from herbarium specimens spanning the diversity of angiosperms. Frontiers in Plant Science 10: e1102. Cameron, J. 2008. Trans-oceanic transfer of bark-cloth technology from south China-southeast Asia to Mesoamerica. In G. Clark, F. Leach, and S. O’Connor [eds.], Islands of Inquiry: Colonisation, Seafaring and the Archaeology of Maritime Landscapes, vol. 29, 203–210. Australian National University Press, Canberra, Australia. Campana, M. G. 2018. BaitsTools: software for hybridization capture bait design. Molecular Ecology Resources 18: 356–361. Capella-Gutierrez, S., J. M. Silla-Martinez, and T. Gabaldon. 2009. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25: 1972–1973. website: http://trimal.cgenomics.org/. Carson, M. T., and H. C. Hung. 2018. Learning from Paleo-landscapes: defining the land-use systems of the ancient Malayo-polynesian homeland. Current Anthropology 59: 790–813. Chang, C. S., H. L. Liu, X. Moncada, A. Seelenfreund, D. Seelenfreund, and K. F. Chung. 2015. A holistic picture of Austronesian migrations revealed by phylogeography of Pacific paper mulberry. Proceedings of the National Academy of Sciences of the United States of America 112: 13537–13542. Davies, S. J., S. Cavers, B. Finegan, A. White, M. F. Breed, and A. J. Lowe. 2015. Pollen flow in fragmented landscapes maintains genetic diversity following stand-replacing disturbance in a neotropical pioneer tree, Vochysia ferruginea Mart. Heredity 115: 125–129. Doyle, J. J. 1990. Isolation of plant DNA from fresh tissue. Focus 12: 13–15. Estoup, A., P. Jarne, and J. M. Cornuet. 2002. Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis. Molecular Ecology 11: 1591–1604. Fischer, M. C., C. Rellstab, M. Leuzinger, M. Roumet, F. Gugerli, K. K. Shimizu, R. Holderegger, and A. Widmer. 2017. Estimating genomic diversity and population differentiation - an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri. BioMed Central Genomics 18: e69. Florece, L. M., and J. O. Colladilla. 2008. Spatial distribution and dominance of paper mulberry (Broussonetia papyrifera) in the vicinities of Mt. Makiling, Philippines. Journal of Environmental Science and Management 9: 54–65. Forrest, L. L., M. L. Hart, M. Hughes, H. P. Wilson, K. F. Chung, Y. H. Tseng, and C. A. Kidner. 2019. The limits of hyb-seq for herbarium specimens: impact of preservation techniques. Frontiers in Ecology and Evolution 7: e439. Gnirke, A., A. Melnikov, J. Maguire, P. Rogov, E. M. LeProust, W. Brockman, T. Fennell, G. Giannoukos, S. Fisher, C. Russ, S. Gabriel, D. B. Jaffe, E. S. Lander, and C. Nusbaum. 2009. Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing. Nature Biotechnology 27: 182–189. Gonzalez-Lorca, J., A. Rivera-Hutinel, X. Moncada, S. Lobos, D. Seelenfreund, and A. Seelenfreund. 2015. Ancient and modern introduction of Broussonetia papyrifera ([L.] Vent.; Moraceae) into the Pacific: genetic, geographical and historical evidence. New Zealand Journal of Botany 53: 75–89. Gray, R. D., A. J. Drummond, and S. J. Greenhill. 2009. Language phylogenies reveal expansion pulses and pauses in Pacific settlement. Science 323: 479–483. Green, R. C. 2000. Origins for the Rapanui of Easter Island before european contact: solutions from holistic anthropology to an Issue no longer much of a mystery. Rapa Nui Journal 14: e2. Guichoux, E., L. Lagache, S. Wagner, P. Chaumeil, P. Leger, O. Lepais, C. Lepoittevin, T. Malausa, E. Revardel, F. Salin, and R. J. Petit. 2011. Current trends in microsatellite genotyping. Molecular Ecology Resources 11: 591–611. Guicking, D., B. Fiala, F. R. Blattner, F. Slik, M. Mohamed, and K. Weising. 2011. Comparative chloroplast DNA phylogeography of two tropical pioneer trees, Macaranga gigantea and Macaranga pearsonii (Euphorbiaceae). Tree Genetics Genomes 7: 573–585. Hamrick, J. L., Y. B. Linhart, and J. B. Mitton. 1979. Relationships between life history characteristics and electrophoretically detectable genetic variation in plants. Annual Review of Ecology and Systematics 10: 173–200. Howard, M. C. 2006. Bark-cloth in Southeast Asia. White Lotus Industries, Thailand. Huang, S. S. F., S. Y. Hwang, and T. P. Lin. 2002. Spatial pattern of chloroplast DNA variation of Cyclobalanopsis glauca in Taiwan and east Asia. Molecular Ecology 11: 2349–2358. Johnson, M. G., E. M. Gardner, Y. Liu, R. Medina, B. Goffinet, A. J. Shaw, N. J. C. Zerega, and N. J. Wickett. 2016. Hybpiper: extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment. Applications in Plant Sciences 4: e1600016. website: https://github.com/mossmatters/HybPiper. Katoh, K., and D. M. Standley. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30: 772–780. website: https://mafft.cbrc.jp/alignment/software/. Kobayashi, Y. 2001. The spreading of hand papermaking and paper mulberry in Asia. Proceeding of the international symposium on paper mulberry and hand-made papers for rural development, Bangkok, Thailand: 14–26. Kooijman, S. 1972. Tapa in Polynesia. Bishop Museum Press, Honolulu, Hawaii. Kottek, M., J. Grieser, C. Beck, B. Rudolf, and F. Rubel. 2006. World map of the Koppen-Geiger climate classification updated. Meteorologische Zeitschrift 15: 259-263. Kueck, P., and G. C. Longo. 2014. FASconCAT-G: extensive functions for multiple sequence alignment preparations concerning phylogenetic studies. Frontiers in Zoology 11: e81. website: https://bonn.leibniz-lib.de/en/research/research-centres-and-groups/fasconcat-g. Kumar, S., G. Stecher, M. Li, C. Knyaz, and K. Tamura. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution 35: 1547–1549. website: https://www.megasoftware.net/home. Lawson, D. J., L. van Dorp, and D. Falush. 2018. A tutorial on how not to over-interpret STRUCTURE and ADMIXTURE bar plots. Nature Communications 9: e3258. Letunic, I., and P. Bork. 2021. Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation. Nucleic Acids Research 49: 293–296. website: https://itol.embl.de. Li, H., and R. Durbin. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754–1760. website: http://bio-bwa.sourceforge.net/. Liao, S. X., Z. H. Deng, K. Cui, Y. Z. Cui, and C. H. Zhang. 2014. Genetic diversity of Broussonetia papyrifera populations in southwest China. Genetics and Molecular Research 13: 7553–7563. Ljungqvist, M., M. Akesson, and B. Hansson. 2010. Do microsatellites reflect genome-wide genetic diversity in natural populations? A comment on Vali et al. (2008). Molecular Ecology 19: 851–855. Lowry, D. B., S. Hoban, J. L. Kelley, K. E. Lotterhos, L. K. Reed, M. F. Antolin, and A. Storfer. 2017. Breaking RAD: an evaluation of the utility of restriction site-associated DNA sequencing for genome scans of adaptation. Molecular Ecology Resources 17: 142–152. Malinsky, M., M. Matschiner, and H. Svardal. 2020. Dsuite—Fast D-statistics and related admixture evidence from VCF files. Molecular Ecology Resources 21: 584–595. website: https://github.com/millanek/Dsuite. Matisoo-Smith, E., R. M. Roberts, G. J. Irwin, J. S. Allen, D. Penny, and D. M. Lambert. 1998. Patterns of prehistoric human mobility in Polynesia indicated by mtDNA from the Pacific rat. Proceedings of the National Academy of Sciences of the United States of America 95: 15145–15150. Matthews, P. 1996. Ethnobotany, and the origins of Broussonetia papyrifera in Polynesia: an essay on tapa prehistory. In J. Davidson, G. Irwin, B. Leach, A. Pawley, and D. Brown [eds.], Oceanic Culture History: Essays in Honour of Roger Green, 117–132. New Zealand Journal of Archaeology Special Publication, Dunedin, New Zealand. McKenna, A., M. Hanna, E. Banks, A. Sivachenko, K. Cibulskis, A. Kernytsky, K. Garimella, D. Altshuler, S. Gabriel, M. Daly, and M. A. DePristo. 2010. The genome analysis toolkit: a mapreduce framework for analyzing next-generation DNA sequencing data. Genome Research 20: 1297–1303. website: https://gatk.broadinstitute.org/hc/en-us. Merrill, E. D. 1954. The botany of Cook's voyages. Chronica Botanica 14: 161–384. Mesenholler, P., and O. Lueb. 2013. Made in Oceania: Tapa-Kunst und Lebenswelten. Rautenstrauch-Joest-Museum-Kulturen der Welt, Köln, Germany. Miller, M. R., J. P. Dunham, A. Amores, W. A. Cresko, and E. A. Johnson. 2007. Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers. Genome Research 17: 240–248. Minh, B. Q., H. A. Schmidt, O. Chernomor, D. Schrempf, M. D. Woodhams, A. von Haeseler, and R. Lanfear. 2020. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Molecular Biology and Evolution 37: 1530–1534. website: http://www.iqtree.org/. Mirabal, S., A. M. Cadenas, R. Garcia-Bertrand, and R. J. Herrera. 2013. Ascertaining the role of Taiwan as a source for the Austronesian expansion. American Journal of Physical Anthropology 150: 551–564. Morgan, E. C., and W. A. Overholt. 2004. Wildland weeds: paper mulberry, Broussonetia papyrifera. University of Florida, Institute of Food and Agricultural Sciences Extension: ENY-702. Olivares, G., B. Pena-Ahumada, J. Penailillo, C. Payacan, X. Moncada, M. Saldarriaga-Cordoba, E. Matisoo-Smith, K. F. Chung, D. Seelenfreund, and A. Seelenfreund. 2019. Human mediated translocation of Pacific paper mulberry [Broussonetia papyrifera (L.) L'Her. ex Vent. (Moraceae)]: Genetic evidence of dispersal routes in Remote Oceania. PLoS ONE 14: e0217107. Payacan, C., X. Moncada, G. Rojas, A. Clarke, K. F. Chung, R. Allaby, D. Seelenfreund, and A. Seelenfreund. 2017. Phylogeography of herbarium specimens of asexually propagated paper mulberry [Broussonetia papyrifera (L.) L'Her. ex Vent. (Moraceae)] reveals genetic diversity across the Pacific. Annals of Botany 120: 387–404. Pelsy, F. 2010. Molecular and cellular mechanisms of diversity within grapevine varieties. Heredity 104: 331–340. Pembleton, L. W., N. O. I. Cogan, and J. W. Forster. 2013. StAMPP: an R package for calculation of genetic differentiation and structure of mixed-ploidy level populations. Molecular Ecology Resources 13: 946–952. website: https://cran.r-project.org/web/packages/StAMPP/index.html. Penailillo, J., G. Olivares, X. Moncada, C. Payacan, C. S. Chang, K. F. Chung, P. J. Matthews, A. Seelenfreund, and D. Seelenfreund. 2016. Sex distribution of paper mulberry (Broussonetia papyrifera) in the pacific. PLoS ONE 11: e0161148. Pfeifer, M., and G. Jetschke. 2006. Influence of geographical isolation on genetic diversity of Himantoglossum hircinum (Orchidaceae). Folia Geobotanica 41: 3–20. Purcell, S., B. Neale, K. Todd-Brown, L. Thomas, M. A. R. Ferreira, D. Bender, J. Maller, P. Sklar, P. I. W. de Bakker, M. J. Daly, and P. C. Sham. 2007. PLINK: a tool set for whole-genome association and population-based linkage analyses. American Journal of Human Genetics 81: 559–575. website: https://zzz.bwh.harvard.edu/plink/. Richards, R., and P. J. Matthews. 2021. Barkcloth from the Solomon Islands in the George Brown Collection. In Jim Specht, Val Attenbrow, and J. Allen [eds.], In from field to museum—studies from Melanesia in honour of Robin Torrence, 245–258. Australian Museum, Sydney, Sydney, Australia. Scarcelli, N., M. Couderc, M. N. Baco, J. Egah, and Y. Vigouroux. 2013. Clonal diversity and estimation of relative clone age: application to agrobiodiversity of yam (Dioscorea rotundata). BMC Plant Biology 13: e178. Schmid-Siegert, E., N. Sarkar, C. Iseli, S. Calderon, C. Gouhier-Darimont, J. Chrast, P. Cattaneo, F. Schutz, L. Farinelli, M. Pagni, M. Schneider, J. Voumard, M. Jaboyedoff, C. Fankhauser, C. S. Hardtke, L. Keller, J. R. Pannell, A. Reymond, M. Robinson-Rechavi, I. Xenarios, and P. Reymond. 2017. Low number of fixed somatic mutations in a long-lived oak tree. Nature Plants 3: 926–929. Schmidt-Lebuhn, A. N., P. Seltmann, and M. Kessler. 2007. Consequences of the pollination system on genetic structure and patterns of species distribution in the Andean genus Polylepis (Rosaceae): a comparative study. Plant Systematics and Evolution 266: 91–103. Seelenfreund, D., R. Pina, K. Y. Ho, S. Lobos, X. Moncada, and A. Seelenfreund. 2011. Molecular analysis of Broussonetia papyrifera (L.) Vent. (Magnoliophyta: Urticales) from the Pacific, based on ribosomal sequences of nuclear DNA. New Zealand Journal of Botany 49: 413–420. Seelenfreund, D., A. C. Clarke, N. Oyanedel, R. Pina, S. Lobos, E. A. Matisoo-Smith, and A. Seelenfreund. 2010. Paper mulberry (Broussonetia papyrifera) as a commensal model for human mobility in Oceania: anthropological, botanical and genetic considerations. New Zealand Journal of Botany 48: 231–247. Sheng, P., L. He, S. S. Ji, J. L. Huang, Z. H. Zhang, D. S. Wang, J. P. Liu, and H. Q. Zhang. 2021. Effect of Broussonetia papyrifera L. (paper mulberry) on growth performance, carcase traits, meat quality and immune performance in Hu ram lambs. Italian Journal of Animal Science 20: 691–697. Si, B. W., H. Tao, X. L. Zhang, J. P. Guo, K. Cui, Y. Tu, and Q. Y. Diao. 2018. Effect of Broussonetia papyrifera L. (paper mulberry) silage on dry matter intake, milk composition, antioxidant capacity and milk fatty acid profile in dairy cows. Asian-Australasian Journal of Animal Sciences 31: 1259–1266. Sofiev, M., J. Belmonte, R. Gehrig, R. Izquierdo, M. Smith, A. Dahl, and P. Siljamo. 2013. Airborne pollen transport. In M. Sofiev and K.C. Bergmann [eds.], Allergenic pollen: a review of the production, release, distribution and health impacts, 127–159. Springer Netherlands, Dordrecht, Nederlands. Sun, R. X., F. R. Lin, P. Huang, X. M. Ye, J. X. Lai, and Y. Q. Zheng. 2019. Phylogeographical Structure of Liquidambar formosana Hance Revealed by Chloroplast Phylogeography and Species Distribution Models. Forests 10: e10. Tanahy, D. 1998. Modern Hawaiian kapa history. [article]. Website http://www.kapahawaii.com/contact-kapa-hawaii.html?id=45 [Accessed in December 25, 2021]. Tu, Y., Q. Diao, R. Zhang, G. Yan, and W. Xiong. 2009. Analysis on feed nutritive value of hybrid Broussonetia papyrifera leaf. Pratacultural Science 26: 136–139. Turner, B., O. Paun, J. Munzinger, M. W. Chase, and R. Samuel. 2016. Sequencing of whole plastid genomes and nuclear ribosomal DNA of Diospyros species (Ebenaceae) endemic to New Caledonia: many species, little divergence. Annals of Botany 117: 1175–1185. Vali, U., A. Einarsson, L. Waits, and H. Ellegren. 2008. To what extent do microsatellite markers reflect genome-wide genetic diversity in natural populations? Molecular Ecology 17: 3808–3817. Wandeler, P., P. E. A. Hoeck, and L. F. Keller. 2007. Back to the future: museum specimens in population genetics. Trends in Ecology and Evolution 22: 634–642. Xu, M. L., L. Wang, J. H. Hu, S. K. Lee, and M. H. Wang. 2010. Antioxidant activities and related polyphenolic constituents of the methanol extract fractions from Broussonetia papyrifera stem bark and wood. Food Science and Biotechnology 19: 677–682. Zhao, X. L., J. F. Liu, X. L. Xia, J. M. Chu, Y. Wei, S. Q. Shi, E. M. Chang, W. L. Yin, and Z. P. Jiang. 2014. The evaluation of heavy metal accumulation and application of a comprehensive bio-concentration index for woody species on contaminated sites in Hunan, China. Environmental Science and Pollution Research 21: 5076–5085. | |
| dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/80550 | - |
| dc.description.abstract | "為了瞭解構樹 [Broussonetia papyrifera (L.) L’Hér. ex Vent., paper mulberry] 於中國、中南半島、台灣等原生地之族群結構以及親緣地理，本試驗使用限制酶切位相關位點核酸定序 (restriction-site associated DNA sequencing, RAD-Seq) 之資料，設計標靶基因獲取 (target capture) 之探針來獲取樣本變異序列，最後分別使用136個亞洲地區構樹序列資料，以及133個太平洋地區之構樹樣本，進行生物資訊分析。相較RAD-Seq，本試驗獲得更多之變異位點 (6,848個簡約性信息位點)，以及降低資料缺值，另外本試驗能使用博物館標本為材料。主成分分析、族群分層以及成對遺傳分化係數顯示亞洲構樹形成兩大分群，廣西、廣東、越南及寮國為一群，中國北部、中國中部、福建及日本為一群；台灣則發現兩個族群，分別為台灣西部及台灣東部。親緣關係樹中顯示，日本構樹族群與浙江及福建構樹族群具有最近親緣關係，索羅門群島構樹與印度構樹具有最近親緣關係，菲律賓構樹起源於中南半島，美國、義大利及智利構樹與北京構樹具有最近親緣關係。而基因滲入及族群分層圖顯示，台灣地區之構樹有滲入中國中部沿海地區之情形，推論為花粉隨季風是進入該地。太平洋構樹族群與台灣族群具有較近親緣關係，然而，太平洋族群內顯示出不明顯之族群結構，且親緣關係樹解析度較低，推論標靶基因獲取探針，所獲得之序列，無法獲得足夠資訊重建太平洋構樹親緣地理。" | zh_TW |
| dc.description.provenance | Made available in DSpace on 2022-11-24T03:09:08Z (GMT). No. of bitstreams: 1 U0001-1002202212050600.pdf: 9289298 bytes, checksum: 7ba97007cc6e7abe741302c468f5a3be (MD5) Previous issue date: 2022 | en |
| dc.description.tableofcontents | 圖目錄 VII 表目錄 VII 壹、前言 1 一、構樹介紹 1 二、亞洲地區構樹族群結構與親緣地理關係 3 三、太平洋地區構樹族群結構與親緣地理關係 6 四、限制酶相關位點設計之標靶基因獲取 9 貳、研究目的 12 參、材料與方法 13 一、試驗樣本 13 二、DNA純化 13 三、基因庫製備 16 四、探針設計 17 五、標靶基因獲取 19 六、序列處理與分析 19 肆、結果 23 一、標靶基因獲取定序結果 23 二、樣本篩選 24 三、主成份分析 25 四、族群分層 25 五、成對遺傳分化係數 27 六、親緣關係分析 30 伍、討論 35 一、標靶基因獲取與限制酶切位相關位點核酸定序之比較 35 二、標靶基因獲取之博物館標本適用性 35 三、中國地區構樹族群結構及親緣地理關係 36 四、日本本島構樹族群起源 38 五、夏威夷 (cp-41)、義大利、智利及美國構樹起源 39 六、中南半島構樹族群結構及親緣地理關係 39 七、索羅門群島和菲律賓構樹起源 40 八、台灣構樹族群結構 40 九、台灣構樹之親緣地理 41 十、琉球群島構樹之親緣地理 43 十一、太平洋地區構樹親緣地理關係 44 十二、太平洋地區構樹親緣關係低解析度成因探討 47 陸、結論 48 柒、參考文獻 49 捌、附錄 59 一、分析使用樣本採集資訊 59 | |
| dc.language.iso | zh-TW | |
| dc.title | 以標靶基因獲取重建構樹親緣地理 | zh_TW |
| dc.title | Phylogeography of Paper Mulberry Using Target Capture | en |
| dc.date.schoolyear | 110-1 | |
| dc.description.degree | 碩士 | |
| dc.contributor.oralexamcommittee | 劉世慧(Jia-Xiang Yang),曾妤馨(Zong-De Liu) | |
| dc.subject.keyword | 先鋒樹種,限制酶切位相關位點核酸定序,探針,HybPiper,族群結構, | zh_TW |
| dc.subject.keyword | Pioneer trees,RAD-Seq,Probe,HybPiper,Population structure, | en |
| dc.relation.page | 71 | |
| dc.identifier.doi | 10.6342/NTU202200515 | |
| dc.rights.note | 同意授權(限校園內公開) | |
| dc.date.accepted | 2022-02-14 | |
| dc.contributor.author-college | 生物資源暨農學院 | zh_TW |
| dc.contributor.author-dept | 森林環境暨資源學研究所 | zh_TW |
| 顯示於系所單位： | 森林環境暨資源學系 | |
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