Skip navigation

DSpace

機構典藏 DSpace 系統致力於保存各式數位資料(如:文字、圖片、PDF)並使其易於取用。

點此認識 DSpace
DSpace logo
English
中文
  • 瀏覽論文
    • 校院系所
    • 出版年
    • 作者
    • 標題
    • 關鍵字
  • 搜尋 TDR
  • 授權 Q&A
    • 我的頁面
    • 接受 E-mail 通知
    • 編輯個人資料
  1. NTU Theses and Dissertations Repository
  2. 醫學院
  3. 生物化學暨分子生物學科研究所
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/78748
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor曾秀如
dc.contributor.authorRen-Mei Wangen
dc.contributor.author王人美zh_TW
dc.date.accessioned2021-07-11T15:16:35Z-
dc.date.available2024-08-28
dc.date.copyright2019-08-28
dc.date.issued2019
dc.date.submitted2019-07-24
dc.identifier.citation1 Pollard, T. D. & Cooper, J. A. Actin, a central player in cell shape and movement. Science 326, 1208-1212, doi:10.1126/science.1175862 (2009).
2 Delanote, V., Vandekerckhove, J. & Gettemans, J. Plastins: versatile modulators of actin organization in (patho)physiological cellular processes. Acta Pharmacol Sin 26, 769-779, doi:10.1111/j.1745-7254.2005.00145.x (2005).
3 Adams, A. E., Shen, W., Lin, C. S., Leavitt, J. & Matsudaira, P. Isoform-specific complementation of the yeast sac6 null mutation by human fimbrin. Mol Cell Biol 15, 69-75, doi:10.1128/mcb.15.1.69 (1995).
4 Shinomiya, H. Plastin family of actin-bundling proteins: its functions in leukocytes, neurons, intestines, and cancer. Int J Cell Biol 2012, 213492, doi:10.1155/2012/213492 (2012).
5 Lin, C. S., Shen, W., Chen, Z. P., Tu, Y. H. & Matsudaira, P. Identification of I-plastin, a human fimbrin isoform expressed in intestine and kidney. Mol Cell Biol 14, 2457-2467, doi:10.1128/mcb.14.4.2457 (1994).
6 Drenckhahn, D. et al. Three different actin filament assemblies occur in every hair cell: each contains a specific actin crosslinking protein. J Cell Biol 112, 641-651, doi:10.1083/jcb.112.4.641 (1991).
7 Lin, C. S., Park, T., Chen, Z. P. & Leavitt, J. Human plastin genes. Comparative gene structure, chromosome location, and differential expression in normal and neoplastic cells. J Biol Chem 268, 2781-2792 (1993).
8 Ikeda, H. et al. The role of T-fimbrin in the response to DNA damage: silencing of T-fimbrin by small interfering RNA sensitizes human liver cancer cells to DNA-damaging agents. Int J Oncol 27, 933-940 (2005).
9 Hagiwara, M. et al. Interaction of activated Rab5 with actin-bundling proteins, L- and T-plastin and its relevance to endocytic functions in mammalian cells. Biochem Biophys Res Commun 407, 615-619, doi:10.1016/j.bbrc.2011.03.082 (2011).
10 Brun, C. et al. T-plastin expression downstream to the calcineurin/NFAT pathway is involved in keratinocyte migration. PLoS One 9, e104700, doi:10.1371/journal.pone.0104700 (2014).
11 Dor-On, E. et al. T-plastin is essential for basement membrane assembly and epidermal morphogenesis. Sci Signal 10, doi:10.1126/scisignal.aal3154 (2017).
12 Lin, C. S., Aebersold, R. H., Kent, S. B., Varma, M. & Leavitt, J. Molecular cloning and characterization of plastin, a human leukocyte protein expressed in transformed human fibroblasts. Mol Cell Biol 8, 4659-4668, doi:10.1128/mcb.8.11.4659 (1988).
13 Morley, S. C. The actin-bundling protein L-plastin: a critical regulator of immune cell function. Int J Cell Biol 2012, 935173, doi:10.1155/2012/935173 (2012).
14 Schwebach, C. L., Agrawal, R., Lindert, S., Kudryashova, E. & Kudryashov, D. S. The Roles of Actin-Binding Domains 1 and 2 in the Calcium-Dependent Regulation of Actin Filament Bundling by Human Plastins. J Mol Biol 429, 2490-2508, doi:10.1016/j.jmb.2017.06.021 (2017).
15 Wang, C. et al. Actin-bundling protein L-plastin regulates T cell activation. Journal of immunology (Baltimore, Md. : 1950) 185, 7487-7497, doi:10.4049/jimmunol.1001424 (2010).
16 Chen, H. et al. Role for plastin in host defense distinguishes integrin signaling from cell adhesion and spreading. Immunity 19, 95-104 (2003).
17 Todd, E. M., Deady, L. E. & Morley, S. C. The actin-bundling protein L-plastin is essential for marginal zone B cell development. Journal of immunology (Baltimore, Md. : 1950) 187, 3015-3025, doi:10.4049/jimmunol.1101033 (2011).
18 Leavitt, J., Goldman, D., Merril, C. & Kakunaga, T. Changes in gene expression accompanying chemically-induced malignant transformation of human fibroblasts. Carcinogenesis 3, 61-70, doi:10.1093/carcin/3.1.61 (1982).
19 de Arruda, M. V., Watson, S., Lin, C. S., Leavitt, J. & Matsudaira, P. Fimbrin is a homologue of the cytoplasmic phosphoprotein plastin and has domains homologous with calmodulin and actin gelation proteins. J Cell Biol 111, 1069-1079, doi:10.1083/jcb.111.3.1069 (1990).
20 Mruk, K., Farley, B. M., Ritacco, A. W. & Kobertz, W. R. Calmodulation meta-analysis: predicting calmodulin binding via canonical motif clustering. J Gen Physiol 144, 105-114, doi:10.1085/jgp.201311140 (2014).
21 Ishida, H., Jensen, K. V., Woodman, A. G., Hyndman, M. E. & Vogel, H. J. The Calcium-Dependent Switch Helix of L-Plastin Regulates Actin Bundling. Sci Rep 7, 40662, doi:10.1038/srep40662 (2017).
22 Giganti, A. et al. Actin-filament cross-linking protein T-plastin increases Arp2/3-mediated actin-based movement. J Cell Sci 118, 1255-1265, doi:10.1242/jcs.01698 (2005).
23 Klein, M. G. et al. Structure of the actin crosslinking core of fimbrin. Structure 12, 999-1013, doi:10.1016/j.str.2004.04.010 (2004).
24 Galkin, V. E., Orlova, A., Cherepanova, O., Lebart, M. C. & Egelman, E. H. High-resolution cryo-EM structure of the F-actin-fimbrin/plastin ABD2 complex. Proc Natl Acad Sci U S A 105, 1494-1498, doi:10.1073/pnas.0708667105 (2008).
25 Janji, B. et al. Phosphorylation on Ser5 increases the F-actin-binding activity of L-plastin and promotes its targeting to sites of actin assembly in cells. J Cell Sci 119, 1947-1960, doi:10.1242/jcs.02874 (2006).
26 Al Tanoury, Z. et al. Quantitative kinetic study of the actin-bundling protein L-plastin and of its impact on actin turn-over. PLoS One 5, e9210, doi:10.1371/journal.pone.0009210 (2010).
27 Dubey, M. et al. L-Plastin S-glutathionylation promotes reduced binding to beta-actin and affects neutrophil functions. Free Radic Biol Med 86, 1-15, doi:10.1016/j.freeradbiomed.2015.04.008 (2015).
28 Park, T., Chen, Z. P. & Leavitt, J. Activation of the leukocyte plastin gene occurs in most human cancer cells. Cancer Res 54, 1775-1781 (1994).
29 Zheng, J. et al. Steroid hormone induction and expression patterns of L-plastin in normal and carcinomatous prostate tissues. Am J Pathol 150, 2009-2018 (1997).
30 Lin, C. S., Lau, A., Yeh, C. C., Chang, C. H. & Lue, T. F. Upregulation of L-plastin gene by testosterone in breast and prostate cancer cells: identification of three cooperative androgen receptor-binding sequences. DNA Cell Biol 19, 1-7, doi:10.1089/104454900314654 (2000).
31 Lin, C. S., Chen, Z. P., Park, T., Ghosh, K. & Leavitt, J. Characterization of the human L-plastin gene promoter in normal and neoplastic cells. J Biol Chem 268, 2793-2801 (1993).
32 Givant-Horwitz, V., Davidson, B. & Reich, R. Laminin-induced signaling in tumor cells. Cancer Lett 223, 1-10, doi:10.1016/j.canlet.2004.08.030 (2005).
33 Delanote, V. et al. An alpaca single-domain antibody blocks filopodia formation by obstructing L-plastin-mediated F-actin bundling. FASEB J 24, 105-118, doi:10.1096/fj.09-134304 (2010).
34 Riplinger, S. M. et al. Metastasis of prostate cancer and melanoma cells in a preclinical in vivo mouse model is enhanced by L-plastin expression and phosphorylation. Mol Cancer 13, 10, doi:10.1186/1476-4598-13-10 (2014).
35 Lommel, M. J. et al. L-plastin Ser5 phosphorylation in breast cancer cells and in vitro is mediated by RSK downstream of the ERK/MAPK pathway. FASEB J 30, 1218-1233, doi:10.1096/fj.15-276311 (2016).
36 Su Kim, D. et al. Composite three-marker assay for early detection of kidney cancer. Cancer Epidemiol Biomarkers Prev 22, 390-398, doi:10.1158/1055-9965.EPI-12-1156 (2013).
37 Li, J. & Zhao, R. Expression and clinical significance of L-plastin in colorectal carcinoma. J Gastrointest Surg 15, 1982-1988, doi:10.1007/s11605-011-1678-4 (2011).
38 Peng, X. Y. et al. The use of the L-plastin promoter for adenoviral-mediated, tumor-specific gene expression in ovarian and bladder cancer cell lines. Cancer Res 61, 4405-4413 (2001).
39 Zheng, J., Rudra-Ganguly, N., Powell, W. C. & Roy-Burman, P. Suppression of prostate carcinoma cell invasion by expression of antisense L-plastin gene. Am J Pathol 155, 115-122, doi:10.1016/S0002-9440(10)65106-1 (1999).
40 Ruskamo, S. & Ylanne, J. Structure of the human filamin A actin-binding domain. Acta Crystallogr D Biol Crystallogr 65, 1217-1221, doi:10.1107/S0907444909037330 (2009).
dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/78748-
dc.description.abstractL-plastin是在物種間具有高度保留性的肌動蛋白結合蛋白,能夠使肌動蛋白絲相互交聯形成微絲束。L-plastin主要穩定表達於正常的血細胞以及大多數的癌細胞中,與許多免疫細胞之功能以及惡性腫瘤的發展進程息息相關;L-plastin的微絲束形成活性會受到鈣離子負向的調控,而根據其N端鈣離子結合區的核磁共振結構,目前認為當結構中的EF-hand motifs與鈣離子結合時,就能夠使L-plastin N端與C端之間連接序列中的CaM-binding motif(CBM)序列,從較無構型的型態轉變為穩定的α螺旋結構,進而與N端的EF-hand結構域交互作用,使接收的鈣離子訊號能夠傳遞至肌動蛋白結合功能區,進而調控蛋白形成微絲束之活性;有無鈣離子結合的L-plastin N端結構已經通過核磁共振(Nuclear Magnetic Resonance)被解出來,然而全長的L-plastin蛋白結構至今仍未被發表,因此即使已有了許多相關的研究,L-plastin N端之鈣離子結合功能區與C端之肌動蛋白結合功能區具體交互作用的機制仍有待探討。而為了更加了解L-plastin受鈣離子調控的機制,我們首先利用大腸桿菌表達L-plastin之重組蛋白,透過固定化金屬離子管柱層析以及膠體過濾層析等方式純化之後,將重組蛋白用於後續結構與功能特性上的分析。從純化的圖譜中發現,L-plastin會以單體及雙聚體的型態穩定存在,且兩者間在一周內並不會出現互相轉換的情形,而活性測試與生物物理學方法的測定則顯示,L-plastin之單體的結構更為穩定且具有較佳的微絲束形成活性;等溫滴定量熱法的結果顯示,L-plastin在20°C進行鈣離子滴定試驗時是呈現放熱反應,且單體和雙聚體與鈣離子結合之KD值大約是在μM的等級;為了進一步觀察由鈣離子所介導的結構變化,我們利用L-plastin EF hand與全長蛋白進行了核磁共振的實驗,與預期結果相同,加入鈣離子之後,有許多L-plastin N端EF hand區域之交叉峰訊號出現明顯化學位移的情形,然而鈣離子對於L-plastin C端結構的影響,則需要更進一步的定序分析去證實;除了核磁共振實驗之外,我們亦嘗試透過X光射線蛋白質晶體繞射分析全長L-plastin結構,雖然已成功培養出L-plastin晶體,但目前還無法成功計算出L-plastin之完整結構。綜上所述,本研究透過許多生物物理之方式,進一步探討了L-plastin之功能與其鈣離子調控之機制,希望能夠為未來可能發展之針對L-plastin所進行的藥物設計提供更多的資訊。zh_TW
dc.description.abstractL-plastin is an actin-bundling protein, which is expressed in hematopoietic cell lineages and many types of cancer cells. It is critical to many immune cell functions and the invasion and metastasis of cancer cells. The actin-bundling activity of L-plastin is known to be calcium-dependent, where increasing calcium concentrations inhibit the formation of actin-bundles. L-plastin is characterized by EF-hand calcium binding domains and actin-binding domains. A recent study has shown that the CaM-binding motif (CBM), a part of the linker between the calcium binding domains and actin-binding domains, may be responsible for conveying the calcium signal from the EF-hands to the actin-binding core. The solution structures of calcium-free EF and calcium-bound EF-H5 are determined by NMR (Nuclear Magnetic Resonance) spectroscopy while the structure of full length L-plastin is still remained unclear. To understand how actin-bundling activity the L-plastin is regulated by altering calcium concentration, we use a combination of biochemical and biophysical approaches to deeply investigate the interaction between L-plastin and calcium. The recombinant L-plastin can be expressed in E. coli and purified by immobilized metal affinity chromatography and gel filtration chromatography. Based on the data from size-exclusion chromatography, we find that the recombinant proteins can be monomeric and dimeric forms and a dynamic monomer-dimer equilibrium cannot be detected in a week. According to the functional assay and the biophysical experiments, the monomeric form of L-plastin shows better stability and actin-bundling activity. The ITC results indicate that the interaction between calcium and L-plastin is an exothermic reaction with two binding site events. In order to investigate the structural changes mediated by calcium binding, we perform titration experiments for the EF and full-length constructs. As expected, addition of calcium results in significant chemical shift perturbation in EF-hand domains but the changes of the four C-domains are still elusive without achievements of backbone assignments. We also attempt to solve the full-length structure of L-plastin by X-ray crystallography. Although L-plastin crystals have been produced, the complete structure of L-plastin cannot be determine successfully. Taken together, our findings provide evidences for the function of L-plastin and the mechanism of calcium regulation using biophysical methods, and hope to help the possible drug design for L-plastin in the future.en
dc.description.provenanceMade available in DSpace on 2021-07-11T15:16:35Z (GMT). No. of bitstreams: 1
ntu-108-R06442022-1.pdf: 4669908 bytes, checksum: 360332592c4ef922649667dd676a1dbe (MD5)
Previous issue date: 2019
en
dc.description.tableofcontents致謝 I
摘要 II
Abstract IV
縮寫表 X
一、引言 1
1.1 人類Plastin同源蛋白異構體(isoform) 1
1.2 L-plastin之功能 2
1.3 L-plastin的結構 3
1.4 L-plastin之調控機制 4
1.5 L-plastin與惡性腫瘤 6
1.6 研究動機及目的 8
二、實驗材料與方法 9
2.1實驗材料 9
2.1.1 菌株、質體及引子 9
2.1.2 培養基、培養液及緩衝溶液 9
2.1.3 蛋白質表現質體 9
2.2實驗方法 9
2.2.1 轉型作用(Transformation) 9
2.2.2 點突變及選殖(Site-directed mutagenesis and cloning) 10
2.2.3 重組蛋白之大量表現 11
2.2.4 重組蛋白之純化 12
2.2.5 蛋白質緩衝溶液置換與濃縮 14
2.2.6 蛋白質定量 14
2.2.7 微絲束形成試驗(Actin bundling assay) 14
2.2.8 生物物理學方法(Biophysical assays) 15
2.2.9 等溫滴定量熱法(isothermal titration calorimetry, ITC) 16
2.2.10 蛋白質核磁共振(protein NMR) 16
2.2.11 蛋白質結晶實驗 17
三、結果 19
3.1 重組蛋白之表現與純化 19
3.1.1 L-plastin蛋白質之表現與純化 19
3.1.2 L-plastin(NTD;1-97)蛋白質之表現與純化 21
3.2 蛋白質活性測試 21
3.3 L-plastin單體與雙聚體之差異探討 22
3.3.1 L-plastin單體與雙聚體之穩定性 23
3.3.2 L-plastin與鈣離子之交互作用 24
3.4 核磁共振(NMR)光譜分析 25
3.4.1 L-plastin單體與雙聚體之二維1H-15N TROSY-HSQC光譜比較 25
3.4.2 L-plastin與L-plastin(NTD)之二維1H-15N TROSY-HSQC光譜比較 25
3.5 L-plastin蛋白質結晶試驗 26
3.5.1 L-plastin蛋白之結晶條件篩選 26
3.5.2 X射線繞射數據收集與結構分析 26
四、討論 28
五、圖 31
六、表 59
七、參考文獻 68
八、附錄 72
dc.language.isozh-TW
dc.title肌動蛋白結合蛋白L-plastin之功能與結構探討zh_TW
dc.titleFunctional and Structural Studies of the Actin-Bundling
Protein L-plastin
en
dc.typeThesis
dc.date.schoolyear107-2
dc.description.degree碩士
dc.contributor.oralexamcommittee李明學,詹迺立,徐駿森
dc.subject.keywordL-plastin,等溫滴定量熱法,核磁共振實驗,蛋白質結晶,X 射線繞射分析,zh_TW
dc.subject.keywordL-plastin,ITC,NMR,protein crystallography,X-ray diffraction,en
dc.relation.page74
dc.identifier.doi10.6342/NTU201901796
dc.rights.note有償授權
dc.date.accepted2019-07-24
dc.contributor.author-college醫學院zh_TW
dc.contributor.author-dept生物化學暨分子生物學研究所zh_TW
dc.date.embargo-lift2024-08-28-
顯示於系所單位:生物化學暨分子生物學科研究所

文件中的檔案:
檔案 大小格式 
ntu-108-R06442022-1.pdf
  目前未授權公開取用
4.56 MBAdobe PDF
顯示文件簡單紀錄


系統中的文件,除了特別指名其著作權條款之外,均受到著作權保護,並且保留所有的權利。

社群連結
聯絡資訊
10617臺北市大安區羅斯福路四段1號
No.1 Sec.4, Roosevelt Rd., Taipei, Taiwan, R.O.C. 106
Tel: (02)33662353
Email: ntuetds@ntu.edu.tw
意見箱
相關連結
館藏目錄
國內圖書館整合查詢 MetaCat
臺大學術典藏 NTU Scholars
臺大圖書館數位典藏館
本站聲明
© NTU Library All Rights Reserved