| Publication Year | Title | Author(s) | Department |
| 2007 | 近濱區外淺水海域多音束地形測量的影響因素探討
Factors Controlling Accuracy of Multi-Beam Sonar Bathymetrical Survey in the Vicinity of Nearshore Area | Chien-Feng Lee; 李建鋒 | 海洋研究所 |
| 2023 | 透過海氣象浮標觀測資料探討西北太平洋之紊流現象
Buoy Observations of Turbulent Mixing in the western North Pacific Ocean | 林欣怡; Hsin-I Lin | 海洋研究所 |
| 2008 | 造礁珊瑚黑病之菌相分佈研究
Bacterial consortium associated with the“black disease'of reef-building corals | Ming-Hui Liao; 廖敏惠 | 海洋研究所 |
| 2024 | 運用海床壓力計研究北南海海盆內孤立波之變化
Internal Solitary Wave Variations in the Northern South China Sea Basin Study with Bottom Pressure Recorder | 游千霈; Chien-Pei Yiu | 海洋研究所 |
| 2023 | 重覆珊瑚白化是否可促使東沙內環礁珊瑚體內增加耐熱型Durusdinium屬共生藻?
Will back-to-back coral bleaching promote thermal-tolerant Symbiodiniaceae, genus Durusdinium, in reef-building corals of the Dongsha Atoll. | 楊乃璇; Nai-Syuan Yang | 海洋研究所 |
| 2007 | 金山至萬里岬灣海岸帶地質特徵
Geological Characteristics of the Cape and Bay of Coastal Zone from Jingshan to Wanli, Northern Taiwan | Li-Shiu Chang; 張力修 | 海洋研究所 |
| 2016 | 金線魚科之分子系統分類
Molecular Systematics of Threadfin Breams and Relatives (Teleostei: Nemipteridae) | Kuo-Wei Hung; 洪國瑋 | 海洋研究所 |
| 2018 | 鋰與隱沒沉積物：海岸山脈的制約
Lithium and subducted sediments: constraints from the Coastal Range, eastern Taiwan | Chia-Chi Hsiao; 蕭家其 | 海洋研究所 |
| 2022 | 錦花軟珊瑚於白化事件後的生物表徵及微生物群探討
Recovering from heat stress: organismal traits and microbiome composition in the Alcyonarian Litophyton sp. following a bleaching event | Yu-Wen Chen; 陳雨雯 | 海洋研究所 |
| 2018 | 錳催化靛藍光度法快速測定水體中總氨方法之研究
Implementation of a fast indophenol blue colorimetric method for the determination of dissolved total ammonia using
manganese (II) as a catalyst | Yi-Hsin Lee; 李奕欣 | 海洋研究所 |
| 2019 | 鎘於河海匯流區中的動態變化：顆粒表面脫附作用及氯離子配位
Cadmium in Estuarine Waters: Dynamic of Particle Surface Desorption and Chloride Coordination | Rui-Cheng Zhang; 張睿晟 | 海洋研究所 |
| 2023 | 鐵對珊瑚共生藻於高溫高光逆境下的效應
Effects of Iron Supply on Symbiodiniaceae under High Light and Heat Stress | 何苡寧; Yi-Ning Ho | 海洋研究所 |
| 2014 | 長江大洪水事件增強東海表水二氧化碳分壓之吸收力
Changjiang floods enhance the CO2 uptake of the East China Sea | Chang-Syue Ji; 暨昌學 | 海洋研究所 |
| 2020 | 間接發育型玉柱蟲Ptychodera flava的胚胎早期神經系統發育過程
Developmental process of the embryonic nervous system in the indirect-developing acorn worm Ptychodera flava | Chang-Tai Tsai; 蔡昌泰 | 海洋研究所 |
| 2022 | 隨沿岸流所驅動的陸棚環流：挾帶過程與Arrested Topographic Wave
Ambient shelf circulation driven by buoyant coastal currents: the roles of entrainment and the Arrested Topographic Wave | Fang-Yu Chang; 張芳瑜 | 海洋研究所 |
| 2017 | 隱沒帶的鋰同位素特徵：以琉球弧為例
Lithium isotopes in subduction zone: a perspective from the Ryukyu arc | Yueh-Feng Hsieh; 謝岳峰 | 海洋研究所 |
| 2007 | 雀鯛科魚類攝食關係再評估
A re-appraisal of feeding relationships of damselfishes | Cheng-Tze Ho; 何政擇 | 海洋研究所 |
| 2005 | 雙平面波陣列分析應用於臺灣寬頻網-方法檢驗 | Chieh-Ru Chen; 陳志如 | 海洋研究所 |
| 2006 | 雲彰隆起表層沉積物及震測地層之初步研究
Yun-Chang Rise Surface Sediments and Seismic Stratum Preliminary Study | kuo-Rung Huang; 黃國榕 | 海洋研究所 |
| 2007 | 電纜觀測海流在地球磁場中引起的電壓
Cable Measurement of Flow-induced Voltage in Earth Magnetic Field | Yuan-Jie Chiou; 邱元玠 | 海洋研究所 |
