Skip navigation

DSpace

機構典藏 DSpace 系統致力於保存各式數位資料(如:文字、圖片、PDF)並使其易於取用。

點此認識 DSpace
DSpace logo
English
中文
  • 瀏覽論文
    • 校院系所
    • 出版年
    • 作者
    • 標題
    • 關鍵字
    • 指導教授
  • 搜尋 TDR
  • 授權 Q&A
    • 我的頁面
    • 接受 E-mail 通知
    • 編輯個人資料
  1. NTU Theses and Dissertations Repository
  2. 生命科學院
  3. 植物科學研究所
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/68060
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor吳克強(Keqiang Wu)
dc.contributor.authorSung-Yen Yuen
dc.contributor.author余松諺zh_TW
dc.date.accessioned2021-06-17T02:11:57Z-
dc.date.available2023-01-27
dc.date.copyright2018-01-27
dc.date.issued2017
dc.date.submitted2018-01-04
dc.identifier.citationAzevedo, C., Santos-Rosa, M.J. and Shirasu, K. (2001) The U-box protein family in plants. Trends Plant Sci. 6, 354–358
Chen, C.Y. (2016) The protein interactome and gene regulatory network of the histone deacetylase HDA15 in Arabidopsis. Ph.D. dissertation, National Taiwan University, Taipei, Taiwan. DOI:10.6342/NTU201602661
Chen, Z. J. and Tian, L. (2007) Roles of dynamic and reversible histone acetylation in plant development and polyploidy. Biochim Biophys Acta. 1769, 295–307
Cheng, S.C., Tarn, W.Y., Tsao, T.Y. and Abelson, J. (1993) PRP19: a novel spliceosomal component. Mol. Cell. Biol. 13, 1876–1882
Corbesier, L., Vincent, C., Jang, S., Fornara, F., Fan, Q., Searle, I., Giakountis, A., Farrona, S., Gissot, L., Turnbull, C. and Coupland, G. (2007) FT protein movement contributes to long-distance signaling in floral induction of Arabidopsis. Science 316, 1030–1033
Cui, Z., Xu, Q. and Wang, X. (2014) Regulation of the circadian clock through pre mRNA splicing in Arabidopsis. J. Exp. Bot. 65, 1973–1980
Deng, X., Gu, L., Liu, C., Lu, T., Lu, F., Lu, Z., Cui, P., Pei,Y., Wang, B., Hu, S. and Cao, X. (2010) Arginine methylation mediated by the Arabidopsis homolog of PRMT5 is essential for proper pre-mRNA splicing. Proc. Natl Acad. Sci. USA, 107, 19114–19119
Deng, X., Lu, T., Wang, L., Gu, L., Sun, J., Kong, X., Liu, C. and Cao, X. (2016) Recruitment of the NineTeen Complex to the activated spliceosome requires AtPRMT5. Proc. Natl Acad. Sci. USA, 113, 5447–5452
Farinas, B. and Mas, P. (2011) Functional implication of the MYB transcription factor
RVE8/LCL5 in the circadian control of histone acetylation. Plant J. 66, 318–329
Fornara, F., Panigrahi, K.C.S., Gissot, L., Sauerbrunn, N., Rühl, M., Jarillo, J.A. and Coupland, G. (2009) Arabidopsis DOF transcription factors act redundantly to reduce CONSTANS expression and are essential for a photoperiodic flowering response. Dev. Cell, 17, 75–86
Gregoretti, I., Lee Y. and Goodson, H. (2004) Molecular evolution of the histone deacetylase family: functional implications of phylogenetic analysis. J Mol Biol. 338, 17–31.
Gunderson, F. Q., Merkhofer, E. C. and Johnson, T. L. (2010) Dynamic histone acetylation is critical for cotranscriptional spliceosome assembly and spliceosomal rearrangements. Proc. Natl Acad. Sci. USA, 108, 2004–2009
Hnilicová, j., Hozeifi, S., Dušková , E., Icha, J., Tománková , T. and Staněk, D. (2011) Histone deacetylase activity modulates alternative splicing. PLoS ONE. 6, e16727
Imaizumi, T., Schultz, T.F., Harmon, F.G., Ho, L.A. and Kay, S.A. (2005) FKF1 F-box protein mediates cyclic degradation of a repressor of CONSTANS in Arabidopsis. Science 309, 293–297
James, A. B., Syed, N. H., Bordage, S., Marshall, J., Nimmo, G. A., Gareth I. Jenkins, G. I., Herzyk, P., Brown, J. W.S. and Nimmo H. G. (2012) Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes. Plant Cell 24, 961–981
Jia, T., Zhang B., You, C., Zhang, Y., Zeng, L., Li, S., Johnson, K.C.M., Yu, B., Li, X. and Chen, X. (2017) The Arabidopsis MOS4-associated complex promotes microRNA biogenesis and precursor messenger RNA splicing. Plant Cell DOI 10.1105/tpc.17.00370
Johnson, L., Mollah, S., Garcia, B.A., Muratore, T.L., Shabanowitz, J., Hunt, D.F., and Jacobsen, S.E. (2004) Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications. Nucleic Acids Res. 32, 6511–6518Ö
Koornneef, M., Hanhart, C.J. and van der Veen, J.H. (1991) A genetic and physiological analysis of late flowering mutants in Arabidopsis thaliana. Mol Gen Genet. 229, 57–66
Kwon, Y.J., Park, M.J., Kim, S.G., Baldwin, I.T and Park, C.M. (2014) Alternative splicing and nonsense-mediated decay of circadian clock genes under environmental stress conditions in Arabidopsis. BMC Plant Biol. 14, 136¬–151
Liu, X., Chen, C.Y., Wang, K.C., Luo, M., Tai, R., Yuan, L., Zhao, M., Yang, S., Tian, G., Cui, Y., Hsieh, H.L. and Wu, K. (2013) PHYTOCHROME INTERACTING FACTOR3 associates with the histone deacetylase HDA15 in repression of chlorophyll biosynthesis and photosynthesis in etiolated Arabidopsis seedlings. Plant Cell 25, 1258–1273
Luco, R.F., Pan Q., Tominaga, K., Blencowe, B.J., Pereira-Smith, O.M. and Misteli, T. (2010) Regulation of alternative splicing by histone modifications. Science 327, 996–1000
Malapeira, P., Khaitova, L. C. and Mas, P. (2012) Ordered changes in histone modifications at the core of the Arabidopsis circadian clock. Proc. Natl Acad. Sci. USA, 109, 21540–21545
Marquez, Y., Brown, J. W.S., Simpson, C., Barta, A.and Kalyna, M. (2012) Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Res 22, 1184–1195
Neer E.J., Schmidt C.J., Nambudripad R. and Smith T.F. (1994) The ancient regulatory-protein family of WD-repeat proteins. Nature 371(6495), 297-300.
Németh, K., Salchert, K., Putnoky, P., Bhalerao, R., Koncz-Kálmán, Z., Stankovic-Stangeland, B., Bakó, L. , Mathur, J., Ökrész, L., Stabel, S., Geigenberger, P., Stitt, M., Rédei, G.P., Schell, J. and Koncz, C. (1998) Pleiotropic control of glucose and hormone responses by PRL1, a nuclear WD protein, in Arabidopsis. Genes Dev. 12, 3059–3073
Neubauer, G., King, A., Rappsilber, J., Calvio, C., Watson, M., Ajuh, P., Sleeman, J, Lamond, A. and Mann, M. (1998) Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex, Nat. Genet. 20, 46-50
Niu, L., Lu, F., Pei, Y., Liu, C. and Cao, X. (2007) Regulation of flowering time by the protein arginine methyltransferase AtPRMT10. EMBO Rep. 8, 1190–1195
Niu, L., Zhang, Y., Pei, Y., Liu, C. and Cao, X. (2008) Redundant requirement for a pair of PROTEIN ARGININE METHYLTRANSFERASE4 homologs for the proper regulation of Arabidopsis flowering time. Plant Physiol. 148, 490–503
Monaghan, J., Xu, F., Gao, M., Zhao, Q., Palma, K., Long, C., Chen, S. Zhang, Y. and Li, X. (2009) Two Prp19-like U-box proteins in the MOS4-associated complex play redundant roles in plant innate immunity, PLoS Pathog. 5, e1000526
Nogués, G., Kadener, S., Cramer, P., Bentley, D.and Kornblihtt, A. R. (2002) Transcriptional activators differ in their abilities to control alternative splicing. J Biol Chem 277, 43110–43114
Palma, K., Zhao, Q., Cheng, Y.T., Bi, D., Monaghan, J., Cheng, W., Zhang, Y. and Li, X. (2007) Regulation of plant innate immunity by three proteins in a complex conserved across the plant and animal kingdoms. Genes Dev. 21, 1484–1493
Pandey, R., Müller, A., Napoli, C. A., Selinger, D. A., Pikaard, C. S., Richards, E. J., Bender, J., Mount, D. W. and Jorgensen, R. A. (2002) Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes. Nucleic Acids Res. 30, 5036–5055
Pei, Y., Niu, L., Lu, F., Liu, C., Zhai, J., Kong, X. and Cao, X. (2007) Mutations in the type II protein arginine methyltransferase AtPRMT5 result in pleiotropic developmental defects in Arabidopsis. Plant Physiol. 144, 1913–1923
Perales, M. and Más, P. (2007) A functional link between rhythmic changes in chromatin structure and the Arabidopsis biological clock. Plant Cell 19, 2111–2123
Rédei, G.P. (1962) Supervital mutants of Arabidopsis. Genetics. 47, 443-460
Ripoll, J.J., Bailey, L.J., Mai1, Q.A., Wu, S.L. Hon, C.T., Elisabeth, J. Chapman, E.J., Ditta, G.S., Estelle, M. and Yanofsky, M.F. (2015) microRNA regulation of fruit growth. Nat. Plants 1, 15-36
Sanchez, S. E., Petrillo, E., Beckwith, E. J., Zhang, X., Rugnone, M. L., Hernando, C. E., Cuevas, J. C., Herz, M. A. G., Depetris-Chauvin, A., Simpson, C. G., Brown, J. W. S., Cerdán, P. D., Borevitz, J. O., Mas, P., Ceriani, M. F., Kornblihtt, A. R. and Yanovsky, M. J. (2010) A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature. 468, 112–116
Sawa, M., Dmitri A. Nusinow, D.A., Kay, S.A., Imaizumi, T. (2007) FKF1 and GIGANTEA complex formation is required for day-length measurement in Arabidopsis. Science 318, 261–265
Seo, P. J., Park, M. Lim, M., Kim, S. Lee, M., Baldwin, I. T. and Parka, C. (2012) A self-regulatory circuit of CIRCADIAN CLOCK-ASSOCIATED1 underlies the circadian clock regulation of temperature responses in Arabidopsis. Plant Cell 24, 2427–2442
Shi, Y., Lan F., Matson, C., Mulligan, P., Whetstine, J.R., Cole, P.A., Casero, R.A. and Shi, Y. (2004) Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell 119, 941–953
Sims, R.J. 3rd, Millhouse, S., Chen, C.F., Lewis, B.A., Erdjument-Bromage, H., Tempst, P., Manley, J.L. and Reinberg, D. (2007) Recognition of trimethylated histone H3 Lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing. Mol Cell. 28, 665–676
Song, H. and Noh, Y. (2012) Rhythmic oscillation of histone acetylation and methylation at the Arabidopsis central clock loci. Mol Cells. 34, 279–287
Syed, N. H., Kalyna, M., Marquez, Y., Barta, A. and Brown, J.W.S. (2012) Alternative splicing in plants – coming of age. Trends Plant Sci 17, 1360–1385
Tarn, W.Y., Lee, K.R. and Cheng, S.C. (1993) The yeast PRP19 protein is not tightly associated with small nuclear RNAs, but appears to associate with the spliceosome after binding of U2 to the pre-mRNA and prior to formation of the functional spliceosome. Mol. Cell. Biol. 13, 1883-1891
Tsukada, Y., Fang J., Erdjument-Bromage, H., Warren, M.E., Borchers, C.H., Tempst, P. and Zhang, Y. (2006) Histone demethylation by a family of JmjC domain-containing proteins. Nature 439, 811–816
Wang, X., Wu, F., Xie, Q., Wang, H., Wang, Y., Yue, Y., Gahura, O., Ma, S., Liu, L., Cao, Y., Jiao, Y., Puta, F., McClung, C. R., Xu, X. and Ma, L. (2012) SKIP is a component of the spliceosome linking alternative splicing and the circadian clock in Arabidopsis. Plant Cell 24, 3278–3295
Xu, F., Xu, S., Wiermer, M., Zhang, Y., and Li, X. (2012) The cyclin L homolog MOS12 and the MOS4‐associated complex are required for the proper splicing of plant resistance genes. Plant J. 70, 916–928
Young, M. W. and Kay, S. A. (2001) Time zones: a comparative genetics of circadian clocks. Nature Rev. Genet. 2, 702–715
Yu, C.W., Liu, X., Luo, M., Chen, C., Lin, X., Tian, G., Lu, Q., Cui, Y. and Wu, K. (2011) HISTONE DEACETYLASE6 interacts with FLOWERING LOCUS D and regulates flowering in Arabidopsis. Plant Physiol. 156, 173–1846
Zhang, K., Sridhar, V.V., Zhu, J., Kapoor, A. and Zhu, J.K. (2007) Distinctive core histone post-translational modification patterns in Arabidopsis thaliana. PLoS ONE 2, e1210
Zhu, Q.H. and Helliwell, C.A. (2011) Regulation of flowering time and floral patterning by miR172. J Exp Bot. 62, 487–495
dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/68060-
dc.description.abstractMOS4-Associated Complex (MAC)為阿拉伯芥中參與mRNA剪接的蛋白複合體,在植物防禦病原菌上扮演重要的角色。然而,對於MAC在植物生長發育中的作用卻鮮少有相關的研究。MOS4 (Modifier of SNC1, 4)為MAC中的核心蛋白。mos4突變體植株對於光週期不敏感,在長日照情況下相較於野生型為晚開花,在短日照情況下則為提早開花。而扮演植物生理時鐘輸出者的GIGANTEA (GI)在mos4突變體植株中的表現較野生型延緩,導致下游促進開花的激活者CONSTANS (CO)也跟著延遲了表現。最終,使得開花整合者FLOWERING LOCUS T (FT)在傍晚仍維持著低表現量。另一方面,生理時鐘之中於白天表現的調控者PSEUDO-RESPONSE REGULATORS (PRRs)也出現了延遲的現象。其中,PRR7跟PRR9更被進一步挑選來觀察選擇性剪接的現象,結果顯示兩者的選擇性剪接情形在mos4突變體植株中都有增加。總合以上結果,我們的研究指出MOS4透過調控生理時鐘基因的剪接來影響到開花時間。zh_TW
dc.description.abstractMOS4 (Modifier of SNC1, 4) is the core protein of the MOS4-associated complex (MAC) involved in mRNA splicing in Arabidopsis. The function of MAC in pathogen resistance has been well studied. However, the pleotropic developmental defects in the mutants of MAC members imply that MAC may also participate in many processes of plant development. Here, we found that the mos4 knock-out mutants are insensitive to photoperiod. mos4 plants display a late flowering phenotype under long-day conditions but are early flowering under short-day conditions. The expression phase of the circadian output GIGANTEA (GI) is shifted in mos4 mutants, resulting delayed expression of the flowering activator CONSTANS (CO). Consequently, the flowering integrator FLOWERING LOCUS T (FT) maintains in a low expression level in the evening. The morning loop genes are essential for maintaining the circadian clock in plants and their expression is delayed about 3 hours in mos4 mutants. Two of the morning loop members, PSEUDO-RESPONSE REGULATORS7 (PRR7) and PRR9, were further analyzed on their alternative splicing events. The alternatively spliced transcripts of PRR7 and PRR9 are increased in mos4 mutants. Taken together, our studies indicate that MOS4 may play an essential role in flowering time control through regulating the splicing of circadian clock genes.en
dc.description.provenanceMade available in DSpace on 2021-06-17T02:11:57Z (GMT). No. of bitstreams: 1
ntu-106-R04b42009-1.pdf: 3270616 bytes, checksum: 8f77683d69814e6f05128bb26c59b3bc (MD5)
Previous issue date: 2017
en
dc.description.tableofcontents口試委員會審定書 #
致謝 i
中文摘要 ii
ABSTRACT iii
CONTENTS iv
LIST OF FIGURES vi
LIST OF SUPPLEMENTARY FIGURES vii
LIST OF SUPPLEMENTARY TABBLES viii
Chapter 1 Introduction 1
1.1 Regulation of circadian rhythms in Arabidopsis 1
1.2 MOS4-ASSOCIATED COMPLEX 2
1.3 Alternative splicing and circadian regulation 4
1.4 Histone methylation and acetylation 5
1.5 Histone modifications and alternative splicing 6
Chapter 2 Materials and methods 9
2.1 Plant materials 9
2.2 Generating MOS4-GFP transgenic plants 9
2.3 DNA extraction 11
2.4 RNA isolation 11
2.5 DNase treatment 12
2.6 Reverse transcription-PCR (RT-PCR) 12
2.7 Real-time PCR analysis 13
2.8 Protoplast transformation (For MOS4 localization) 13
2.9 Bimolecular fluorescence complementation (BiFC) assay 16
Chapter 3 Results 18
3.1 Expression and subcellular localization of MOS4 18
3.2 Identification of the homozygous T-DNA insertion mutants of MOS4 18
3.3 The photoperiod-insensitive phenotype of mos4 mutants in flowering time 19
3.4 Expression patterns of flowering genes are altered in mos4 mutants 19
3.5 Circadian rhythm defect in mos4 mutants 20
3.6 Alternatively spliced transcripts of PRR9 and PRR7 are increased in mos4 mutants 20
3.7 MOS4 interacts with HDACs and HAG2 21
3.8 HDA15 does not participate in photoperiod pathway 21
Chapter 4 Discussions 23
4.1 Circadian rhythm shift leads to a co-mutant like phenotype in mos4 mutants 23
4.2 The enrichment of intron retention in transcripts prolong the transcription of PRR9 in mos4 mutants 24
4.3 MOS4 interacts with HDA6 25
4.4 MOS4 interact with HDA15 and may participate in the regulation of miRNA172 26
FIGURES 27
SUPPLEMENTARY FIGURES 44
SUPPLEMENTARY TABLES 47
REFERENCES 50
dc.language.isoen
dc.subject光周期zh_TW
dc.subjectMOS4zh_TW
dc.subject開花zh_TW
dc.subject選擇性剪接zh_TW
dc.subjectcircadianen
dc.subjectfloweringen
dc.subjectMOS4en
dc.subjectalternative splicingen
dc.title阿拉伯芥中MOS4參與在生理時鐘調控的角色zh_TW
dc.titleThe role of MOS4 in circadian clock regulation in Arabidopsisen
dc.typeThesis
dc.date.schoolyear106-1
dc.description.degree碩士
dc.contributor.oralexamcommittee鄭秋萍,楊淑怡,林盈仲,蔡皇龍
dc.subject.keywordMOS4,光周期,選擇性剪接,開花,zh_TW
dc.subject.keywordMOS4,circadian,alternative splicing,flowering,en
dc.relation.page54
dc.identifier.doi10.6342/NTU201800003
dc.rights.note有償授權
dc.date.accepted2018-01-04
dc.contributor.author-college生命科學院zh_TW
dc.contributor.author-dept植物科學研究所zh_TW
顯示於系所單位:植物科學研究所

文件中的檔案:
檔案 大小格式 
ntu-106-1.pdf
  未授權公開取用
3.19 MBAdobe PDF
顯示文件簡單紀錄


系統中的文件,除了特別指名其著作權條款之外,均受到著作權保護,並且保留所有的權利。

社群連結
聯絡資訊
10617臺北市大安區羅斯福路四段1號
No.1 Sec.4, Roosevelt Rd., Taipei, Taiwan, R.O.C. 106
Tel: (02)33662353
Email: ntuetds@ntu.edu.tw
意見箱
相關連結
館藏目錄
國內圖書館整合查詢 MetaCat
臺大學術典藏 NTU Scholars
臺大圖書館數位典藏館
本站聲明
© NTU Library All Rights Reserved