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| DC 欄位 | 值 | 語言 |
|---|---|---|
| dc.contributor.advisor | 詹世鵬(Shih-Peng Chan) | |
| dc.contributor.author | Yi-Jun Wu | en |
| dc.contributor.author | 吳翊均 | zh_TW |
| dc.date.accessioned | 2021-06-17T01:16:30Z | - |
| dc.date.available | 2022-09-14 | |
| dc.date.copyright | 2017-09-14 | |
| dc.date.issued | 2017 | |
| dc.date.submitted | 2017-08-14 | |
| dc.identifier.citation | [1] Birney, E., et al. (1993). 'Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors.' Nucleic Acids Res 21(25): 5803-5816.
[2] Maris, C., et al. (2005). 'The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression.' Febs j 272(9): 2118-2131. [3] Dominguez, C. and F. H. Allain (2006). 'NMR structure of the three quasi RNA recognition motifs (qRRMs) of human hnRNP F and interaction studies with Bcl-x G-tract RNA: a novel mode of RNA recognition.' Nucleic Acids Res 34(13): 3634-3645. [4] Siomi, H., et al. (1993). 'The pre-mRNA binding K protein contains a novel evolutionarily conserved motif.' Nucleic Acids Res 21(5): 1193-1198. [5] Valverde, R., et al. (2008). 'Structure and function of KH domains.' Febs j 275(11): 2712-2726. [6] Kiledjian, M. and G. Dreyfuss (1992). 'Primary structure and binding activity of the hnRNP U protein: binding RNA through RGG box.' Embo j 11(7): 2655-2664. [7] Cartegni, L., et al. (1996). 'hnRNP A1 selectively interacts through its Gly-rich domain with different RNA-binding proteins.' J Mol Biol 259(3): 337-348. [8] Kim, J. H., et al. (2000). 'Protein-protein interaction among hnRNPs shuttling between nucleus and cytoplasm.' J Mol Biol 298(3): 395-405. [9] Michelotti, E. F., et al. (1996). 'Heterogeneous nuclear ribonucleoprotein K is a transcription factor.' Mol Cell Biol 16(5): 2350-2360. [10] Krecic, A. M. and M. S. Swanson (1999). 'hnRNP complexes: composition, structure, and function.' Curr Opin Cell Biol 11(3): 363-371. [11] Kukalev, A., et al. (2005). 'Actin and hnRNP U cooperate for productive transcription by RNA polymerase II.' Nat Struct Mol Biol 12(3): 238-244. [12] Fukuda, A., et al. (2009). 'Heterogeneous nuclear ribonucleoprotein R enhances transcription from the naturally configured c-fos promoter in vitro.' J Biol Chem 284(35): 23472-23480. [13] Chaudhury, A., et al. (2010). 'Heterogeneous nuclear ribonucleoproteins (hnRNPs) in cellular processes: Focus on hnRNP E1′s multifunctional regulatory roles.' Rna 16(8): 1449-1462. [14] Choi, Y. D., et al. (1986). 'Heterogeneous nuclear ribonucleoproteins: role in RNA splicing.' Science 231(4745): 1534-1539. [15] Nakielny, S. and G. Dreyfuss (1996). 'The hnRNP C proteins contain a nuclear retention sequence that can override nuclear export signals.' J Cell Biol 134(6): 1365-1373. [16] Kim, J. H., et al. (2003). 'Heterogeneous nuclear ribonucleoprotein C modulates translation of c-myc mRNA in a cell cycle phase-dependent manner.' Mol Cell Biol 23(2): 708-720. [17] Geuens, T., et al. (2016). 'The hnRNP family: insights into their role in health and disease.' Hum Genet 135(8): 851-867. [18] Zhao, T. T., et al. (2009). 'hnRNP A1 regulates UV-induced NF-kappaB signalling through destabilization of cIAP1 mRNA.' Cell Death Differ 16(2): 244-252. [19] Czyzyk-Krzeska, M. F. and J. E. Beresh (1996). 'Characterization of the hypoxia-inducible protein binding site within the pyrimidine-rich tract in the 3′-untranslated region of the tyrosine hydroxylase mRNA.' J Biol Chem 271(6): 3293-3299. [20] Czyzyk-Krzeska, M. F. and A. C. Bendixen (1999). 'Identification of the poly(C) binding protein in the complex associated with the 3′ untranslated region of erythropoietin messenger RNA.' Blood 93(6): 2111-2120. [21] Holcik, M. and S. A. Liebhaber (1997). 'Four highly stable eukaryotic mRNAs assemble 3′ untranslated region RNA-protein complexes sharing cis and trans components.' Proc Natl Acad Sci U S A 94(6): 2410-2414. [22] Yu, J. and J. E. Russell (2001). 'Structural and functional analysis of an mRNP complex that mediates the high stability of human beta-globin mRNA.' Mol Cell Biol 21(17): 5879-5888. [23] Yeap, B. B., et al. (2002). 'Novel binding of HuR and poly(C)-binding protein to a conserved UC-rich motif within the 3′-untranslated region of the androgen receptor messenger RNA.' J Biol Chem 277(30): 27183-27192. [24] Soderberg, M., et al. (2007). 'Identification of a regulatory cis-element within the 3′-untranslated region of the murine inducible nitric oxide synthase (iNOS) mRNA; interaction with heterogeneous nuclear ribonucleoproteins I and L and role in the iNOS gene expression.' Mol Immunol 44(4): 434-442. [25] Reches, A., et al. (2016). 'HNRNPR Regulates the Expression of Classical and Nonclassical MHC Class I Proteins.' J Immunol 196(12): 4967-4976. [26] Park, S. J., et al. (2015). 'Heterogeneous nuclear ribonucleoprotein A1 post-transcriptionally regulates Drp1 expression in neuroblastoma cells.' Biochim Biophys Acta 1849(12): 1423-1431. [27] Pickering, B. M., et al. (2003). 'Polypyrimidine tract binding protein and poly r(C) binding protein 1 interact with the BAG-1 IRES and stimulate its activity in vitro and in vivo.' Nucleic Acids Res 31(2): 639-646. [28] Lee, H. R., et al. (2015). 'Heterogeneous ribonucleoprotein R regulates arylalkylamine N-acetyltransferase synthesis via internal ribosomal entry site-mediated translation in a circadian manner.' J Pineal Res 59(4): 518-529. [29] Naarmann, I. S., et al. (2008). 'mRNA silencing in human erythroid cell maturation: heterogeneous nuclear ribonucleoprotein K controls the expression of its regulator c-Src.' J Biol Chem 283(26): 18461-18472. [30] Pont, A. R., et al. (2012). 'mRNA decay factor AUF1 maintains normal aging, telomere maintenance, and suppression of senescence by activation of telomerase transcription.' Mol Cell 47(1): 5-15. [31] Lopez de Silanes, I., et al. (2010). 'TERRA transcripts are bound by a complex array of RNA-binding proteins.' Nat Commun 1: 33. [32] Haley, B., et al. (2009). 'Response of heterogeneous ribonuclear proteins (hnRNP) to ionising radiation and their involvement in DNA damage repair.' Int J Radiat Biol 85(8): 643-655. [33] Liu, X., et al. (2016). 'Knockdown of HNRNPA1 inhibits lung adenocarcinoma cell proliferation through cell cycle arrest at G0/G1 phase.' Gene 576(2 Pt 2): 791-797. [34] Qu, X. H., et al. (2015). 'Insights into the roles of hnRNP A2/B1 and AXL in non-small cell lung cancer.' Oncol Lett 10(3): 1677-1685. [35] Barboro, P., et al. (2014). 'Emerging roles of heterogeneous nuclear ribonucleoprotein K (hnRNP K) in cancer progression.' Cancer Lett 352(2): 152-159. [36] Chou, M. Y., et al. (1999). 'hnRNP H is a component of a splicing enhancer complex that activates a c-src alternative exon in neuronal cells.' Mol Cell Biol 19(1): 69-77. [37] Matter, N., et al. (2000). 'Heterogeneous ribonucleoprotein A1 is part of an exon-specific splice-silencing complex controlled by oncogenic signaling pathways.' J Biol Chem 275(45): 35353-35360. [38] Rooke, N., et al. (2003). 'Roles for SR proteins and hnRNP A1 in the regulation of c-src exon N1.' Mol Cell Biol 23(6): 1874-1884. [39] Ford, L. P., et al. (2002). 'A model for heterogeneous nuclear ribonucleoproteins in telomere and telomerase regulation.' Oncogene 21(4): 580-583. [40] Lee, E. K., et al. (2010). 'hnRNP C promotes APP translation by competing with FMRP for APP mRNA recruitment to P bodies.' Nat Struct Mol Biol 17(6): 732-739. [41] Borreca, A., et al. (2016). 'Opposite Dysregulation of Fragile-X Mental Retardation Protein and Heteronuclear Ribonucleoprotein C Protein Associates with Enhanced APP Translation in Alzheimer Disease.' Mol Neurobiol 53(5): 3227-3234. [42] Kashima, T., et al. (2007). 'hnRNP A1 functions with specificity in repression of SMN2 exon 7 splicing.' Hum Mol Genet 16(24): 3149-3159. [43] Chen, H. H., et al. (2008). 'The RNA binding protein hnRNP Q modulates the utilization of exon 7 in the survival motor neuron 2 (SMN2) gene.' Mol Cell Biol 28(22): 6929-6938. [44] Cho, S., et al. (2014). 'hnRNP M facilitates exon 7 inclusion of SMN2 pre-mRNA in spinal muscular atrophy by targeting an enhancer on exon 7.' Biochim Biophys Acta 1839(4): 306-315. [45] Moursy, A., et al. (2014). 'Characterization of the RNA recognition mode of hnRNP G extends its role in SMN2 splicing regulation.' Nucleic Acids Res 42(10): 6659-6672. [46] Dombert, B., et al. (2014). 'Presynaptic localization of Smn and hnRNP R in axon terminals of embryonic and postnatal mouse motoneurons.' PLoS One 9(10): e110846. [47] Glinka, M., et al. (2010). 'The heterogeneous nuclear ribonucleoprotein-R is necessary for axonal beta-actin mRNA translocation in spinal motor neurons.' Hum Mol Genet 19(10): 1951-1966. [48] Ecsedi, M. and H. Grosshans (2013). 'LIN-41/TRIM71: emancipation of a miRNA target.' Genes Dev 27(6): 581-589. [49] Worringer, K. A., et al. (2014). 'The let-7/LIN-41 pathway regulates reprogramming to human induced pluripotent stem cells by controlling expression of prodifferentiation genes.' Cell Stem Cell 14(1): 40-52. [50] Chen, Y. L., et al. (2013). 'The stem cell E3-ligase Lin-41 promotes liver cancer progression through inhibition of microRNA-mediated gene silencing.' J Pathol 229(3): 486-496. [51] Slack, F. J., et al. (2000). 'The lin-41 RBCC gene acts in the C. elegans heterochronic pathway between the let-7 regulatory RNA and the LIN-29 transcription factor.' Mol Cell 5(4): 659-669. [52] Pasquinelli, A. E., et al. (2000). 'Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA.' Nature 408(6808): 86-89. [53] Lin, Y. C., et al. (2007). 'Human TRIM71 and its nematode homologue are targets of let-7 microRNA and its zebrafish orthologue is essential for development.' Mol Biol Evol 24(11): 2525-2534. [54] Field, J., et al. (1988). 'Purification of a RAS-responsive adenylyl cyclase complex from Saccharomyces cerevisiae by use of an epitope addition method.' Mol Cell Biol 8(5): 2159-2165. [55] Green, N., et al. (1982). 'Immunogenic structure of the influenza virus hemagglutinin.' Cell 28(3): 477-487. [56] Lai, M. C., et al. (2008). 'The DEAD-box RNA helicase DDX3 associates with export messenger ribonucleoproteins as well as tip-associated protein and participates in translational control.' Mol Biol Cell 19(9): 3847-3858. [57] Cinelli, R. A., et al. (2000). 'The enhanced green fluorescent protein as a tool for the analysis of protein dynamics and localization: local fluorescence study at the single-molecule level.' Photochem Photobiol 71(6): 771-776. [58] Shaner, N. C., et al. (2005). 'A guide to choosing fluorescent proteins.' Nat Methods 2(12): 905-909. [59] Balzeau, J., et al. (2017). 'The LIN28/let-7 Pathway in Cancer.' Front Genet 8: 31. [60] Piskounova, E., et al. (2011). 'Lin28A and Lin28B inhibit let-7 microRNA biogenesis by distinct mechanisms.' Cell 147(5): 1066-1079. [61] Rougvie, A. E. and V. Ambros (1995). 'The heterochronic gene lin-29 encodes a zinc finger protein that controls a terminal differentiation event in Caenorhabditis elegans.' Development 121(8): 2491-2500. [62] Cao, X. M., et al. (1990). 'Identification and characterization of the Egr-1 gene product, a DNA-binding zinc finger protein induced by differentiation and growth signals.' Mol Cell Biol 10(5): 1931-1939. [63] Herrick, D. J. and J. Ross (1994). 'The half-life of c-myc mRNA in growing and serum-stimulated cells: influence of the coding and 3' untranslated regions and role of ribosome translocation.' Mol Cell Biol 14(3): 2119-2128. | |
| dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/66989 | - |
| dc.description.abstract | 異質性核核醣核酸蛋白(Heterogeneous nuclear ribonucleoproteins, hnRNPs) 是一個至少包含了二十種以上核醣核酸結合蛋白家族,大多數的異質性核核醣核酸蛋白主要表現在細胞核當中,由於其都具有核糖核酸結合區域 (RNA-binding domains),因此異質性核核醣核酸蛋白在功能上被認為會參與許多核醣核酸的生合成與代謝路徑,包括在細胞核內基因的轉錄、訊息核醣核酸的剪接與運送等等。異質性核核醣核酸蛋白能隨轉運至細胞核中,參與調控轉譯形成蛋白質之過程以及訊息核糖核酸的穩定性。除此之外,異質性核核醣核酸蛋白也會參與非編碼核糖核酸(Non-coding RNAs),比如微小核醣核酸 (microRNAs, miRNAs)的生合成與功能。我們於先前的研究當中,發現線蟲異質性核核醣核酸蛋白HRP-2能夠藉由結合在lin-41訊息核醣核酸的三端不轉譯區,來干擾let-7微小核醣核酸對lin-41誘發之基因沉默。HRP-2在人類當中的同源蛋白質包含異質核醣核酸蛋白Q和R (hnRNP Q/R),我們進一步發現hnRNP Q有類似HRP-2在線蟲當中的功能。HNRNPQ的基因敲落,會造成TRIM71蛋白質表現量的大幅下降,我們證明了此現象是由於hnRNP Q能夠藉由結合在TRIM71訊息核醣核酸的三端不轉譯區,干擾let-7誘發的基因沉默現象 (論文尚未發表)。lin-41 (lineage variant 41)/TRIM71 (tripartite motif 71) 基因編有E3泛素連接酶的密碼訊息,其訊息核糖核酸受到抑癌微小核醣核酸let-7調控是為廣為人知。LIN41/TRIM71蛋白質亦具有結合核醣核酸的能力,在先前研究被報導和幹細胞的分化與複製以及癌細胞的分裂複製相關。在這篇研究當中,我們想研究線蟲HRP-2在人類中同源蛋白hnRNP R,是否同樣會調控TRIM71基因的表現。我們利用TRIM71蛋白質相對高表現量的肝癌細胞株Huh7作為實驗材料,將HNRNPR基因敲落,發現TRIM71的蛋白質及mRNA的表現都有顯著性的下降。同樣的趨勢也在另一肝癌細胞株HepG2中被觀察到。除此之外我們發現在缺乏hnRNP R 蛋白質的情況之下,TRIM71 mRNA的穩定性會降低。hnRNP R蛋白質調控TRIM71基因表現的機制以及其與let-7之間是否存在類似hnRNP Q阻斷let-7對於 TRIM71負向功能關聯性,仍有待未來進一步探討。 | zh_TW |
| dc.description.provenance | Made available in DSpace on 2021-06-17T01:16:30Z (GMT). No. of bitstreams: 1 ntu-106-R04445117-1.pdf: 1915839 bytes, checksum: 8d4ddf70766260e5544d22789d9f8b8f (MD5) Previous issue date: 2017 | en |
| dc.description.tableofcontents | 口試委員會審定書 Ⅰ
誌謝 Ⅱ 中文摘要 Ⅲ ABSTRACT Ⅳ CONTENTS 1 Chapter 1 Introduction 4 1.1 heterogeneous nuclear ribonucleoproteins (hnRNPs) 4 1.1.1 The hnRNPs family and their structural features 4 1.1.2 Functional diversity of hnRNPs 5 1.1.3 Link of hnRNPs to diseases 7 1.1.4 hnRNP R 8 1.2 Lin-41/TRIM71 8 1.3 Project aims 9 Chapter 2 Materials and Methods 11 2.1 Cell culture and Transfection 11 2.2 Lentivirus packging and infection 13 2.3 Cell lysate preperationand protein quantitation 14 2.4 Nuclear / Cytoplasmic fractionation 15 2.5 Immunoblotting 16 2.6 Plasmids 17 2.6.1 Vectors 17 2.6.2 Constructs 18 2.7 RNA isolation 19 2.8 Reverse transcription 20 2.8.1 Random priming-based reverse transcription 20 2.8.2 Poly-A tail-based reverse transcription 21 2.9 Quantitative real time polymerase chain reaction 22 2.10 mRNA stability assay 24 Chapter 3 Results 25 3.1 hnRNP R knockdown leads to a decrease in TRIM71 protein levels 25 3.2 hnRNP R knockdown leads to a decrease in TRIM71 mRNA levels 26 3.3 The TRIM71 mRNA stability is influenced by hnRNP R knockdown 26 3.4 Exogenous hnRNP R expression partially restores TRIM71 expression in hnRNP R knocked down Huh7 cells 27 Chapter 4 Discussion 29 4.1 Expression of hnRNP R in hnRNP R depleted Huh7 cells partially restores the reduced TRIM71 protein levels 29 4.2 LIN28B expression may be influenced by hnRNP R knockdown in HepG2 but not Huh7 cells 29 4.3 hnRNP R knockdown increases the protein levels of hnRNP Q2/Q3 30 Chapter 5 Figures 32 Figure 1. hnRNP R knockdown leads to a decrease in TRIM71 protein levels in Huh7 cells. 32 Figure 2. hnRNP R knockdown leads to a decreased in TRIM71 protein levels in HepG2 cells 33 Figure 3. hnRNP R knockdown by siRNAs transfection did not affect the protein levels of TRIM71 in Huh7 cells 35 Figure 4. hnRNP R knockdown significantly decreased TRIM71 mRNA levels in both Huh7 and HepG2 cells 36 Figure 5. The stability of TRIM71 mRNA is influenced by hnRNP R knockdown in Huh7 cells 38 Figure 6. Expression of hnRNP R fusion protein in hnRNP R knockdown Huh7 cells 40 Chapter 6 References 42 Chapter 7 Appendix 48 Appendix 1 . 48 Appendix 2 . 49 Appendix 3 . 51 | |
| dc.language.iso | zh-TW | |
| dc.subject | 異質性核核醣核酸蛋白Q/R | zh_TW |
| dc.subject | let-7微小核糖核酸 | zh_TW |
| dc.subject | lin-41/TRIM71 | zh_TW |
| dc.subject | HRP-2 | zh_TW |
| dc.subject | lin-41/TRIM71 | en |
| dc.subject | hnRNP Q/R | en |
| dc.subject | HRP-2 | en |
| dc.subject | let-7 miRNA | en |
| dc.title | 研究異質性核核醣核酸蛋白R對於TRIM71基因表現的調控機制 | zh_TW |
| dc.title | Study of the regulatory role for heterogeneous nuclear ribonucleoprotein R in TRIM71 expression | en |
| dc.type | Thesis | |
| dc.date.schoolyear | 105-2 | |
| dc.description.degree | 碩士 | |
| dc.contributor.oralexamcommittee | 譚婉玉(Woan-Yuh Tarn),朱家瑩(Chia-Ying Chu) | |
| dc.subject.keyword | 異質性核核醣核酸蛋白Q/R,lin-41/TRIM71,HRP-2,let-7微小核糖核酸, | zh_TW |
| dc.subject.keyword | hnRNP Q/R,lin-41/TRIM71,HRP-2,let-7 miRNA, | en |
| dc.relation.page | 51 | |
| dc.identifier.doi | 10.6342/NTU201702840 | |
| dc.rights.note | 有償授權 | |
| dc.date.accepted | 2017-08-14 | |
| dc.contributor.author-college | 醫學院 | zh_TW |
| dc.contributor.author-dept | 微生物學研究所 | zh_TW |
| 顯示於系所單位: | 微生物學科所 | |
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