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  1. NTU Theses and Dissertations Repository
  2. 生命科學院
  3. 生化科技學系
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/64071
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor吳亘承(Hsuan-Chen Wu)
dc.contributor.authorYing-Chih Kungen
dc.contributor.author龔穎之zh_TW
dc.date.accessioned2021-06-16T17:28:48Z-
dc.date.available2021-02-22
dc.date.copyright2021-02-22
dc.date.issued2021
dc.date.submitted2021-02-04
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42. Nemunaitis, J., et al., Pilot trial of genetically modified, attenuated Salmonella expressing the E. coli cytosine deaminase gene in refractory cancer patients. Cancer Gene Therapy, 2003. 10(10): p. 737-744.
43. Stritzker, J., et al., Tumor-specific colonization, tissue distribution, and gene induction by probiotic Escherichia coli Nissle 1917 in live mice. International Journal of Medical Microbiology, 2007. 297(3): p. 151-162.
44. Matsumoto, M., et al., Longevity in Mice Is Promoted by Probiotic-Induced Suppression of Colonic Senescence Dependent on Upregulation of Gut Bacterial Polyamine Production. PLoS ONE, 2011. 6(8): p. e23652.
45. Duong, M.T.-Q., et al., Bacteria-cancer interactions: bacteria-based cancer therapy. Experimental and Molecular Medicine, 2019. 51(12): p. 152-167.
46. Sonnenborn, U., Escherichia coli strain Nissle 1917—from bench to bedside and back: history of a special Escherichia coli strain with probiotic properties. FEMS Microbiology Letters, 2016. 363(19): p. fnw212.
47. Reister, M., et al., Complete genome sequence of the Gram-negative probiotic Escherichia coli strain Nissle 1917. Journal of Biotechnology, 2014. 187: p. 106-107.
48. Azpiroz, M.a.F., E. Rodrı́guez, and M. Laviña, The Structure, Function, and Origin of the Microcin H47 ATP-Binding Cassette Exporter Indicate Its Relatedness to That of Colicin V. Antimicrobial Agents and Chemotherapy, 2001. 45(3): p. 969-972.
49. Nougayrede, J.P., Escherichia coli Induces DNA Double-Strand Breaks in Eukaryotic Cells. Science, 2006. 313(5788): p. 848-851.
50. Homburg, S., et al., Expression analysis of the colibactin gene cluster coding for a novel polyketide inEscherichia coli. FEMS Microbiology Letters, 2007. 275(2): p. 255-262.
51. Schroder, K., et al., Interferon-γ: an overview of signals, mechanisms and functions. Journal of Leukocyte Biology, 2004. 75(2): p. 163-189.
52. Wu, L., Recognition of Host Immune Activation by Pseudomonas aeruginosa. Science, 2005. 309(5735): p. 774-777.
53. Wang, Y., The Function of OmpA in Escherichia coli. Biochemical and Biophysical Research Communications, 2002. 292(2): p. 396-401.
54. Verhoeven, G.S., et al., Differential Bacterial Surface Display of Peptides by the Transmembrane Domain of OmpA. PLoS ONE, 2009. 4(8): p. e6739.
55. Aurand, T.C. and J.C. March, Development of a synthetic receptor protein for sensing inflammatory mediators interferon-γ and tumor necrosis factor-α. Biotechnology and Bioengineering, 2016. 113(3): p. 492-500.
56. Butte, M.J., et al., Programmed Death-1 Ligand 1 Interacts Specifically with the B7-1 Costimulatory Molecule to Inhibit T Cell Responses. Immunity, 2007. 27(1): p. 111-122.
57. Butte, M.J., et al., Interaction of human PD-L1 and B7-1. Molecular Immunology, 2008. 45(13): p. 3567-3572.
58. Cheng, X., et al., Structure and Interactions of the Human Programmed Cell Death 1 Receptor. Journal of Biological Chemistry, 2013. 288(17): p. 11771-11785.
59. Ghiotto, M., et al., PD-L1 and PD-L2 differ in their molecular mechanisms of interaction with PD-1. International Immunology, 2010. 22(8): p. 651-660.
60. Lázár-Molnár, E., et al., Structure-guided development of a high-affinity human Programmed Cell Death-1: Implications for tumor immunotherapy. EBioMedicine, 2017. 17: p. 30-44.
61. Lee, J.-R., et al., Magneto-nanosensor platform for probing low-affinity protein–protein interactions and identification of a low-affinity PD-L1/PD-L2 interaction. Nature Communications, 2016. 7: p. 12220-12229.
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63. Tan, S., et al., An unexpected N-terminal loop in PD-1 dominates binding by nivolumab. Nature Communications, 2017. 8(1): p. 14369-14379.
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65. Li, C., et al., Peptide Blocking of PD-1/PD-L1 Interaction for Cancer Immunotherapy. Cancer Immunology Research, 2018. 6(2): p. 178-188.
66. Kotzsch, A., et al., A secretory system for bacterial production of high-profile protein targets. Protein Science, 2011. 20(3): p. 597-609.
67. Jarmander, J., et al., A dual tag system for facilitated detection of surface expressed proteins in Escherichia coli. Microbial Cell Factories, 2012. 11(1): p. 118-128.
68. Tsao, C.-Y., et al., Autonomous induction of recombinant proteins by minimally rewiring native quorum sensing regulon of E. coli. Metabolic Engineering, 2010. 12(3): p. 291-297.
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dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/64071-
dc.description.abstract免疫檢查點抑制法 (immune checkpoint inhibition) 是現今癌症免疫治療中具有發展潛力的療法,其可反轉癌細胞經由免疫檢查點抑制T細胞活化之過程,進而激活免疫系統消除癌細胞。然而免疫檢查點抑制法仍有許多限制,例如:(1) 抑制劑藥物為大分子蛋白質或抗體,無法有效地深入固體腫瘤深處;(2) 免疫功能過度激活導致全身性自體免疫疾病。因此,如何有效地將免疫檢查點抑制藥物運送至腫瘤微環境是一個待克服的問題。在本研究中,我們利用基因工程改造的微生物載體作為免疫檢查點抑制劑的傳輸系統,以增進免疫檢查點抑制法的成效。我們希望以合成生物學之方法建構出具有 (1) 辨認腫瘤微環境中的免疫調控訊息interferon γ (IFN-γ) 的能力與 (2) 受IFN-γ偵測訊號調控免疫檢查點抑制劑的生合成之腸道益生菌 E. coli Nissle 1917 (EcN)。我們成功讓微生物生產並外泌出免疫檢查點抑制劑,且抑制劑在濃度約52 μM的情形下,能夠有效地與癌細胞表面上的免疫檢查點蛋白質結合。然而,我們目前建構的IFN-γ感測系統尚無法有效開啟下游目標基因,推測可能是IFN-γ產生的壓力訊號不足,仍需更進一步探討與調整基因迴路以達到偵測效果。綜合來說,本研究所建構的微生物載體系統能外泌免疫檢查點抑制劑藥物,利用合成生物學的優勢,未來能與其他技術合併,幫助新一代抗癌藥物的發展。zh_TW
dc.description.abstractImmune checkpoint inhibition has great potential for development in cancer immunotherapy nowadays. Immune checkpoint inhibitors revert the T cell inhibitory signaling generated by cancer cells through immune checkpoint pathway and reactivated subsequent anti-tumor immune response. Still, there are some concerns in immune checkpoint inhibition therapy. For example, inhibitors like antibodies could hardly penetrate into the core of solid tumors. Also, uncontrolled activation of the immune system causes systematic immune-related adverse events, like cytokine release syndrome (CRS). Therefore, how to effectively deliver immune checkpoint inhibitors to tumor microenvironments remains a big challenge. With the intrinsic anti-tumor property of anaerobic bacteria, bacteria-mediated tumor therapy (BMTT) has made tremendous progress in cancer therapeutic studies recently. In this research, we utilize genetically engineered microorganisms as drug delivery vectors to enhance the efficiency of immune checkpoint inhibition therapy. With the strategy of synthetic biology, we aim to engineer a novel probiotic vehicle with the ability of sensing interferon γ (IFN-γ), a signaling cytokine released by the immune system against tumors, and synthesizing a common immune checkpoint inhibitor, PDL1 blocker, upon sensing the immune systems in the tumor microenvironments. We successfully modified the probiotic E. coli strain Nissle 1917 (EcN) to produce and secrete out anti-PDL1 peptide, TPP. TPP peptide effectively blocked immune checkpoint protein on surface of tumor cells at the concentration of 52 μM. However, the IFN-γ sensing system currently constructed in the research briefly showed no significant detection ability. More characterizations and genetic circuit reprogramming will be implemented to tune up the sensing capability. In summary, we successfully constructed the secretory system of immune checkpoint inhibitor in bacteria. We envision this system is able to be integrated with other synthetic biology modalities developing a new generation anti-cancer therapy in the future.en
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Previous issue date: 2021
en
dc.description.tableofcontents誌謝 i
中文摘要 ii
英文摘要 iii
第1章 緒論 1
1.1. 癌症治療方法 1
1.1.1. 癌症與腫瘤微環境的簡介 1
1.1.2. 現行癌症治療法 2
1.1.3. 免疫檢查點抑制劑療法 2
1.1.3.1. 免疫檢查點的作用機制 3
1.1.3.2. 免疫檢查點抑制劑療法的副作用與限制 4
1.1.3.3. 免疫檢查點抑制劑現今的發展 5
1.1.4. 細菌療法 6
1.1.4.1. 細菌療法的機制 6
1.1.4.2. 細菌療法的副作用與限制 7
1.1.4.3. 細菌療法現今的發展 8
1.1.4.4. 益生菌Nissle 1917 9
1.2. 細菌的IFN-γ感測系統 10
1.2.1. IFN-γ的簡介 10
1.2.2. 綠膿桿菌的OprF 蛋白質 10
1.2.3. OmpA/OprF 嵌合蛋白質 11
1.3. 研究動機 12
1.3.1. 目的 12
1.3.2. 策略 12
1.3.3. 欲達成之目標 15
第2章 材料與方法 18
2.1. 實驗菌株與培養條件 18
2.1.1. 細菌 18
2.1.2. 細胞株 18
2.2. 培養基與藥品 19
2.3. 表現載體之建構 20
2.3.1. pSC101-OmpA/OprF 20
2.3.2. pBAC-PpspA-T7Rpol 20
2.3.3. pET200-T7P-OsmY-6xHis-TPP (or SPP) 20
2.3.4. pET200-T7P-OsmY-6xHis-mCherry-TPP (or SPP) 21
2.3.5. pET200-TPP (or SPP)-Venus-AIDA-I 21
2.4. 大腸桿菌電穿孔轉形法 25
2.4.1. E. coli勝任細胞製備 25
2.4.2. 電穿孔轉形 25
2.5. 免疫檢查點抑制劑之分析 26
2.5.1. 聚丙烯醯胺膠體電泳分析 26
2.5.2. 西方墨點法 26
2.5.3. 蛋白質純化與濃縮 26
2.5.4. 超微薄膜過濾法濃縮 27
2.5.5. 外泌之免疫檢查點抑制劑功能性測試 27
2.5.6. 表面呈現之免疫檢查點抑制劑功能性測試 27
2.6. IFN-γ感測系統之分析 29
2.6.1. IFN-γ感測系統之功能檢測 29
2.6.2. T7Rpol mRNA分析 29
第3章 結果 32
3.1. 免疫檢查點抑制劑活性測試 32
3.1.1. 構築外泌型免疫檢查點抑制劑表現菌株 32
3.1.2. 蛋白質表現與純化 34
3.1.3. 外泌型免疫檢查點抑制劑活性測試 39
3.1.4. 表面呈現之免疫檢查點抑制劑功能性測試 43
3.2. 大腸桿菌IFN-γ感測系統之改良 48
3.2.1. 於Nissle 1917中構築IFN-γ感測系統 48
3.2.2. IFN-γ感測系統之活性測試 50
3.2.3. 誘導後不同時間點之T7Rpol表現量分析 51
第4章 討論 53
4.1. OsmY嵌合蛋白質外泌系統 53
4.2. TPP免疫檢查點抑制劑的活性測試 53
4.3. 表面呈現免疫檢查點抑制劑系統 54
4.4. IFN-γ感測系統 54
第5章 結論 56
第6章 未來展望 57
第7章 參考資料 58
dc.language.isozh-TW
dc.subject癌症免疫療法zh_TW
dc.subjectNissle 1917zh_TW
dc.subject細菌療法zh_TW
dc.subjectIFN-γzh_TW
dc.subject免疫檢查點zh_TW
dc.subjectBMTTen
dc.subjectcancer immunotherapyen
dc.subjectEcNen
dc.subjectimmune checkpointen
dc.subjectIFN-γen
dc.title基因轉殖大腸桿菌具有感測腫瘤微環境暨藥物輸送能力之探討分析zh_TW
dc.titleEvaluation of Engineered Escherichia coli as a Tumor Sensing and Drug Delivery Device for Enhancing Tumor Immunotherapyen
dc.typeThesis
dc.date.schoolyear109-1
dc.description.degree碩士
dc.contributor.oralexamcommittee楊啓伸(Chii-Shen Yang),黃筱鈞(Hsiao-Chun Huang)
dc.subject.keyword癌症免疫療法,免疫檢查點,IFN-γ,細菌療法,Nissle 1917,zh_TW
dc.subject.keywordcancer immunotherapy,immune checkpoint,IFN-γ,BMTT,EcN,en
dc.relation.page63
dc.identifier.doi10.6342/NTU202100409
dc.rights.note有償授權
dc.date.accepted2021-02-05
dc.contributor.author-college生命科學院zh_TW
dc.contributor.author-dept生化科技學系zh_TW
顯示於系所單位:生化科技學系

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