Skip navigation

DSpace

機構典藏 DSpace 系統致力於保存各式數位資料(如:文字、圖片、PDF)並使其易於取用。

點此認識 DSpace
DSpace logo
English
中文
  • 瀏覽論文
    • 校院系所
    • 出版年
    • 作者
    • 標題
    • 關鍵字
    • 指導教授
  • 搜尋 TDR
  • 授權 Q&A
    • 我的頁面
    • 接受 E-mail 通知
    • 編輯個人資料
  1. NTU Theses and Dissertations Repository
  2. 醫學院
  3. 微生物學科所
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/59214
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor林宜玲(Yi-Ling Lin)
dc.contributor.authorHan Chiuen
dc.contributor.author邱涵zh_TW
dc.date.accessioned2021-06-16T09:18:00Z-
dc.date.available2022-09-08
dc.date.copyright2017-09-08
dc.date.issued2017
dc.date.submitted2017-07-11
dc.identifier.citation1. Adachi S, Homoto M, Tanaka R, Hioki Y, Murakami H, Suga H, Matsumoto M, Nakayama KI, Hatta T, Iemura S, Natsume T. 2014. ZFP36L1 and ZFP36L2 control LDLR mRNA stability via the ERK-RSK pathway. Nucleic Acids Res 42:10037-10049.
2. Atasheva S, Frolova EI, Frolov I. 2014. Interferon-stimulated poly(ADP-Ribose) polymerases are potent inhibitors of cellular translation and virus replication. J Virol 88:2116-2130.
3. Bell SE, Sanchez MJ, Spasic-Boskovic O, Santalucia T, Gambardella L, Burton GJ, Murphy JJ, Norton JD, Clark AR, Turner M. 2006. The RNA binding protein Zfp36l1 is required for normal vascularisation and post-transcriptionally regulates VEGF expression. Dev Dyn 235:3144-3155.
4. Bick MJ, Carroll JWN, Gao G, Goff SP, Rice CM, MacDonald MR. 2003. Expression of the Zinc-Finger Antiviral Protein Inhibits Alphavirus Replication. Journal of Virology 77:11555-11562.
5. Blackshear PJ. 2002. Tristetraprolin and other CCCH tandem zinc-finger proteins in the regulation of mRNA turnover. Biochem Soc Trans 30:945-952.
6. Blight KJ, McKeating JA, Marcotrigiano J, Rice CM. 2003. Efficient Replication of Hepatitis C Virus Genotype 1a RNAs in Cell Culture. Journal of Virology 77:3181-3190.
7. Brinton MA, Basu M. 2015. Functions of the 3' and 5' genome RNA regions of members of the genus Flavivirus. Virus Res 206:108-119.
8. Chen LK, Lin YL, Liao CL, Lin CG, Huang YL, Yeh CT, Lai SC, Jan JT, Chin C. 1996. Generation and characterization of organ-tropism mutants of Japanese encephalitis virus in vivo and in vitro. Virology 223:79-88.
9. Chien HL, Liao CL, Lin YL. 2011. FUSE binding protein 1 interacts with untranslated regions of Japanese encephalitis virus RNA and negatively regulates viral replication. J Virol 85:4698-4706.
10. Ciais D, Cherradi N, Bailly S, Grenier E, Berra E, Pouyssegur J, Lamarre J, Feige JJ. 2004. Destabilization of vascular endothelial growth factor mRNA by the zinc-finger protein TIS11b. Oncogene 23:8673-8680.
11. Fernandez-Garcia MD, Mazzon M, Jacobs M, Amara A. 2009. Pathogenesis of flavivirus infections: using and abusing the host cell. Cell Host Microbe 5:318-328.
12. Franks TM, Lykke-Andersen J. 2007. TTP and BRF proteins nucleate processing body formation to silence mRNAs with AU-rich elements. Genes Dev 21:719-735.
13. Fu M, Blackshear PJ. 2017. RNA-binding proteins in immune regulation: a focus on CCCH zinc finger proteins. Nat Rev Immunol 17:130-143.
14. Galloway A, Saveliev A, Lukasiak S, Hodson DJ, Bolland D, Balmanno K, Ahlfors H, Monzon-Casanova E, Mannurita SC, Bell LS, Andrews S, Diaz-Munoz MD, Cook SJ, Corcoran A, Turner M. 2016. RNA-binding proteins ZFP36L1 and ZFP36L2 promote cell quiescence. Science 352:453-459.
15. Garneau NL, Wilusz J, Wilusz CJ. 2007. The highways and byways of mRNA decay. Nat Rev Mol Cell Biol 8:113-126.
16. Hall TM. 2005. Multiple modes of RNA recognition by zinc finger proteins. Curr Opin Struct Biol 15:367-373.
17. Haller O, Kochs G, Weber F. 2006. The interferon response circuit: induction and suppression by pathogenic viruses. Virology 344:119-130.
18. Halsey ES, Williams M, Laguna-Torres VA, Vilcarromero S, Ocana V, Kochel TJ, Marks MA. 2014. Occurrence and correlates of symptom persistence following acute dengue fever in Peru. Am J Trop Med Hyg 90:449-456.
19. Herranz N, Gallage S, Mellone M, Wuestefeld T, Klotz S, Hanley CJ, Raguz S, Acosta JC, Innes AJ, Banito A, Georgilis A, Montoya A, Wolter K, Dharmalingam G, Faull P, Carroll T, Martinez-Barbera JP, Cutillas P, Reisinger F, Heikenwalder M, Miller RA, Withers D, Zender L, Thomas GJ, Gil J. 2015. mTOR regulates MAPKAPK2 translation to control the senescence-associated secretory phenotype. Nat Cell Biol 17:1205-1217.
1. Adachi S, Homoto M, Tanaka R, Hioki Y, Murakami H, Suga H, Matsumoto M, Nakayama KI, Hatta T, Iemura S, Natsume T. 2014. ZFP36L1 and ZFP36L2 control LDLR mRNA stability via the ERK-RSK pathway. Nucleic Acids Res 42:10037-10049.
2. Atasheva S, Frolova EI, Frolov I. 2014. Interferon-stimulated poly(ADP-Ribose) polymerases are potent inhibitors of cellular translation and virus replication. J Virol 88:2116-2130.
3. Bell SE, Sanchez MJ, Spasic-Boskovic O, Santalucia T, Gambardella L, Burton GJ, Murphy JJ, Norton JD, Clark AR, Turner M. 2006. The RNA binding protein Zfp36l1 is required for normal vascularisation and post-transcriptionally regulates VEGF expression. Dev Dyn 235:3144-3155.
4. Bick MJ, Carroll JWN, Gao G, Goff SP, Rice CM, MacDonald MR. 2003. Expression of the Zinc-Finger Antiviral Protein Inhibits Alphavirus Replication. Journal of Virology 77:11555-11562.
5. Blackshear PJ. 2002. Tristetraprolin and other CCCH tandem zinc-finger proteins in the regulation of mRNA turnover. Biochem Soc Trans 30:945-952.
6. Blight KJ, McKeating JA, Marcotrigiano J, Rice CM. 2003. Efficient Replication of Hepatitis C Virus Genotype 1a RNAs in Cell Culture. Journal of Virology 77:3181-3190.
7. Brinton MA, Basu M. 2015. Functions of the 3' and 5' genome RNA regions of members of the genus Flavivirus. Virus Res 206:108-119.
8. Chen LK, Lin YL, Liao CL, Lin CG, Huang YL, Yeh CT, Lai SC, Jan JT, Chin C. 1996. Generation and characterization of organ-tropism mutants of Japanese encephalitis virus in vivo and in vitro. Virology 223:79-88.
9. Chien HL, Liao CL, Lin YL. 2011. FUSE binding protein 1 interacts with untranslated regions of Japanese encephalitis virus RNA and negatively regulates viral replication. J Virol 85:4698-4706.
10. Ciais D, Cherradi N, Bailly S, Grenier E, Berra E, Pouyssegur J, Lamarre J, Feige JJ. 2004. Destabilization of vascular endothelial growth factor mRNA by the zinc-finger protein TIS11b. Oncogene 23:8673-8680.
11. Fernandez-Garcia MD, Mazzon M, Jacobs M, Amara A. 2009. Pathogenesis of flavivirus infections: using and abusing the host cell. Cell Host Microbe 5:318-328.
12. Franks TM, Lykke-Andersen J. 2007. TTP and BRF proteins nucleate processing body formation to silence mRNAs with AU-rich elements. Genes Dev 21:719-735.
13. Fu M, Blackshear PJ. 2017. RNA-binding proteins in immune regulation: a focus on CCCH zinc finger proteins. Nat Rev Immunol 17:130-143.
14. Galloway A, Saveliev A, Lukasiak S, Hodson DJ, Bolland D, Balmanno K, Ahlfors H, Monzon-Casanova E, Mannurita SC, Bell LS, Andrews S, Diaz-Munoz MD, Cook SJ, Corcoran A, Turner M. 2016. RNA-binding proteins ZFP36L1 and ZFP36L2 promote cell quiescence. Science 352:453-459.
15. Garneau NL, Wilusz J, Wilusz CJ. 2007. The highways and byways of mRNA decay. Nat Rev Mol Cell Biol 8:113-126.
16. Hall TM. 2005. Multiple modes of RNA recognition by zinc finger proteins. Curr Opin Struct Biol 15:367-373.
17. Haller O, Kochs G, Weber F. 2006. The interferon response circuit: induction and suppression by pathogenic viruses. Virology 344:119-130.
18. Halsey ES, Williams M, Laguna-Torres VA, Vilcarromero S, Ocana V, Kochel TJ, Marks MA. 2014. Occurrence and correlates of symptom persistence following acute dengue fever in Peru. Am J Trop Med Hyg 90:449-456.
19. Herranz N, Gallage S, Mellone M, Wuestefeld T, Klotz S, Hanley CJ, Raguz S, Acosta JC, Innes AJ, Banito A, Georgilis A, Montoya A, Wolter K, Dharmalingam G, Faull P, Carroll T, Martinez-Barbera JP, Cutillas P, Reisinger F, Heikenwalder M, Miller RA, Withers D, Zender L, Thomas GJ, Gil J. 2015. mTOR regulates MAPKAPK2 translation to control the senescence-associated secretory phenotype. Nat Cell Biol 17:1205-1217.
20. Hodson DJ, Janas ML, Galloway A, Bell SE, Andrews S, Li CM, Pannell R, Siebel CW, MacDonald HR, De Keersmaecker K, Ferrando AA, Grutz G, Turner M. 2010. Deletion of the RNA-binding proteins ZFP36L1 and ZFP36L2 leads to perturbed thymic development and T lymphoblastic leukemia. Nat Immunol 11:717-724.
21. King NJ, Getts DR, Getts MT, Rana S, Shrestha B, Kesson AM. 2007. Immunopathology of flavivirus infections. Immunol Cell Biol 85:33-42.
22. Kozaki T, Komano J, Kanbayashi D, Takahama M, Misawa T, Satoh T, Takeuchi O, Kawai T, Shimizu S, Matsuura Y, Akira S, Saitoh T. 2017. Mitochondrial damage elicits a TCDD-inducible poly(ADP-ribose) polymerase-mediated antiviral response. Proc Natl Acad Sci U S A 114:2681-2686.
23. Krishna SS. 2003. Structural classification of zinc fingers: SURVEY AND SUMMARY. Nucleic Acids Research 31:532-550.
24. Lai WS, Carballo E, Thorn JM, Kennington EA, Blackshear PJ. 2000. Interactions of CCCH zinc finger proteins with mRNA. Binding of tristetraprolin-related zinc finger proteins to Au-rich elements and destabilization of mRNA. J Biol Chem 275:17827-17837.
25. Lin RJ, Chien HL, Lin SY, Chang BL, Yu HP, Tang WC, Lin YL. 2013. MCPIP1 ribonuclease exhibits broad-spectrum antiviral effects through viral RNA binding and degradation. Nucleic Acids Res 41:3314-3326.
26. Lin RJ, Chu JS, Chien HL, Tseng CH, Ko PC, Mei YY, Tang WC, Kao YT, Cheng HY, Liang YC, Lin SY. 2014. MCPIP1 suppresses hepatitis C virus replication and negatively regulates virus-induced proinflammatory cytokine responses. J Immunol 193:4159-4168.
27. Lin YL, Liao CL, Chen LK, Yeh CT, Liu CI, Ma SH, Huang YY, Huang YL, Kao CL, King CC. 1998. Study of Dengue virus infection in SCID mice engrafted with human K562 cells. J Virol 72:9729-9737.
28. Lykke-Andersen J, Wagner E. 2005. Recruitment and activation of mRNA decay enzymes by two ARE-mediated decay activation domains in the proteins TTP and BRF-1. Genes & Development 19:351-361.
29. Maeda M, Sawa H, Tobiume M, Tokunaga K, Hasegawa H, Ichinohe T, Sata T, Moriyama M, Hall WW, Kurata T, Takahashi H. 2006. Tristetraprolin inhibits HIV-1 production by binding to genomic RNA. Microbes Infect 8:2647-2656.
30. Makarova O, Kamberov E, Margolis B. 2000. Generation of deletion and point mutations with one primer in a single cloning step. Biotechniques 29:970-972.
31. Morgan BR, Massi F. 2010. A computational study of RNA binding and specificity in the tandem zinc finger domain of TIS11d. Protein Sci 19:1222-1234.
32. Muller S, Moller P, Bick MJ, Wurr S, Becker S, Gunther S, Kummerer BM. 2007. Inhibition of filovirus replication by the zinc finger antiviral protein. J Virol 81:2391-2400.
33. Sampath A, Padmanabhan R. 2009. Molecular targets for flavivirus drug discovery. Antiviral Res 81:6-15.
34. Shimada H, Ichikawa H, Nakamura S, Katsu R, Iwasa M, Kitabayashi I, Ohki M. 2000. Analysis of genes under the downstream control of the t(8;21) fusion protein AML1-MTG8: overexpression of the TIS11b (ERF-1, cMG1) gene induces myeloid cell proliferation in response to G-CSF. Blood 96:655-663.
35. Stoecklin G, Colombi M, Raineri I, Leuenberger S, Mallaun M, Schmidlin M, Gross B, Lu M, Kitamura T, Moroni C. 2002. Functional cloning of BRF1, a regulator of ARE-dependent mRNA turnover. EMBO J 21:4709-4718.
36. Stumpo DJ, Byrd NA, Phillips RS, Ghosh S, Maronpot RR, Castranio T, Meyers EN, Mishina Y, Blackshear PJ. 2004. Chorioallantoic fusion defects and embryonic lethality resulting from disruption of Zfp36L1, a gene encoding a CCCH tandem zinc finger protein of the Tristetraprolin family. Mol Cell Biol 24:6445-6455.
37. Valadao AL, Aguiar RS, de Arruda LB. 2016. Interplay between Inflammation and Cellular Stress Triggered by Flaviviridae Viruses. Front Microbiol 7:1233.
38. Wang KT, Wang HH, Wu YY, Su YL, Chiang PY, Lin NY, Wang SC, Chang GD, Chang CJ. 2015. Functional regulation of Zfp36l1 and Zfp36l2 in response to lipopolysaccharide in mouse RAW264.7 macrophages. J Inflamm (Lond) 12:42.
39. Welsby I, Hutin D, Gueydan C, Kruys V, Rongvaux A, Leo O. 2014. PARP12, an interferon-stimulated gene involved in the control of protein translation and inflammation. J Biol Chem 289:26642-26657.
40. Yen LC, Liao JT, Lee HJ, Chou WY, Chen CW, Lin YL, Liao CL. 2015. The C Terminus of the Core beta-Ladder Domain in Japanese Encephalitis Virus Nonstructural Protein 1 Is Flexible for Accommodation of Heterologous Epitope Fusion. J Virol 90:1178-1189.
41. Zhu Y, Chen G, Lv F, Wang X, Ji X, Xu Y, Sun J, Wu L, Zheng YT, Gao G. 2011. Zinc-finger antiviral protein inhibits HIV-1 infection by selectively targeting multiply spliced viral mRNAs for degradation. Proc Natl Acad Sci U S A 108:15834-15839.
dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/59214-
dc.description.abstractZFP36L1可利用兩個鋅手指狀的蛋白質構型(zinc finger domain)與mRNA結合,並藉由徵募細胞中的RNA五端到三端或是三端到五端的降解機制,來促進結合的mRNA降解。目前為止,報導過可被ZFP36L1調控的mRNA侷限於細胞中的mRNA,像是TNFα、GM-CSF和IL-3等等。此篇研究中,我們利用同屬黃質病毒的日本腦炎病毒(JEV)以及登革病毒(DENV),其基因體為具五端cap但缺三端poly(A)-tail的正向RNA,首次證實了ZFP36L1具有抗病毒的能力。在細胞中過度表現ZFP36L1能夠抑制JEV以及DENV的複製,利用移除(deletion)和點突變(point mutation)實驗,證實ZFP36L1上兩個鋅手指狀構型對於病毒RNA的結合是必須的,也會影響到ZFP36L1抑制JEV和DENV的能力。ZFP36L1憑藉細胞中降解mRNA的酵素exosome complex和XRN1,來降解病毒的RNA以達成制止病毒的複製。有趣的是,細胞中降解mRNA的初始步驟deadenylation參與在ZFP36L1抗DENV,但不參與抗JEV的機制當中。降低細胞內ZFP36L1表現顯示,細胞中的ZFP36L1也有抑制病毒複製的能力,而且JEV感染可增加ZFP36L1蛋白質降解,來逃避其抗病毒作用。總結上述,我們將ZFP36L1蛋白質的功能延伸至宿主細胞抵抗JEV和DENV的感染,並且找出抑制病毒複製的機制,使我們對這個細胞內帶有鋅手指狀構型的蛋白質有更深入的了解。zh_TW
dc.description.abstractZFP36L1, containing tandem CCCH-type zinc finger domains, is an RNA binding protein, which promotes targeted mRNA decay by recruiting the cellular 5'→3' and 3'→5' RNA degradation machinery. To date, the reported mRNA abundance regulated by ZFP36L1 is restricted to cellular mRNA such as TNFα, GM-CSF, and IL-3 etc. In this study, we demonstrated for the first time that ZFP36L1 exhibited antiviral activity. Overexpression of ZFP36L1 inhibited the infection of Japanese encephalitis virus (JEV) and dengue virus (DENV), which are flaviviruses containing positive-sensed RNA genome with 5'cap but not 3' poly(A)-tail. Deletion and mutation studies showed that both of the zinc finger domains of ZFP36L1 were important for viral RNA binding and antiviral activity against JEV and DENV. The cellular mRNA decay machinery, exosome complex and XRN1, were involved in the targeting of viral RNA mediated by ZFP36L1. Interestingly, deadenylation, the initial step of cellular mRNA decay, was involved in the anti-DENV but not anti-JEV action of ZFP36L1. Endogenous ZFP36L1 took part in the antiviral effect against flavivirus infection as demonstrated by knockdown experiments and JEV could target ZFP36L1 by protein degradation. Altogether, we extend the function of ZFP36L1 to host antiviral defense and reveal the antiviral mechanism to gain more insight on the antiviral effect of this cellular zinc finger containing protein.en
dc.description.provenanceMade available in DSpace on 2021-06-16T09:18:00Z (GMT). No. of bitstreams: 1
ntu-106-R04445108-1.pdf: 4455410 bytes, checksum: 0a1517706fb8d55de8b875e330b041d6 (MD5)
Previous issue date: 2017
en
dc.description.tableofcontentsAbstract I
中文摘要 II
Table of Contents III
List of Figures IV
Introduction 1
Materials and Methods 7
Results 14
Discussion 22
References 25
Figures 30
dc.language.isoen
dc.subject抗病毒機制zh_TW
dc.subjectZFP36L1zh_TW
dc.subject鋅手指狀構型zh_TW
dc.subjectZFP36L1en
dc.subjectantiviral mechanismen
dc.subjectCCCH-type zinc finger domainen
dc.titleZFP36L1蛋白質抗病毒的作用機制zh_TW
dc.titleThe antiviral mechanism of ZFP36L1 proteinen
dc.typeThesis
dc.date.schoolyear105-2
dc.description.degree碩士
dc.contributor.oralexamcommittee陳美如,詹世鵬,張?仁
dc.subject.keywordZFP36L1,鋅手指狀構型,抗病毒機制,zh_TW
dc.subject.keywordZFP36L1,CCCH-type zinc finger domain,antiviral mechanism,en
dc.relation.page46
dc.identifier.doi10.6342/NTU201701438
dc.rights.note有償授權
dc.date.accepted2017-07-11
dc.contributor.author-college醫學院zh_TW
dc.contributor.author-dept微生物學研究所zh_TW
顯示於系所單位:微生物學科所

文件中的檔案:
檔案 大小格式 
ntu-106-1.pdf
  未授權公開取用
4.35 MBAdobe PDF
顯示文件簡單紀錄


系統中的文件,除了特別指名其著作權條款之外,均受到著作權保護,並且保留所有的權利。

社群連結
聯絡資訊
10617臺北市大安區羅斯福路四段1號
No.1 Sec.4, Roosevelt Rd., Taipei, Taiwan, R.O.C. 106
Tel: (02)33662353
Email: ntuetds@ntu.edu.tw
意見箱
相關連結
館藏目錄
國內圖書館整合查詢 MetaCat
臺大學術典藏 NTU Scholars
臺大圖書館數位典藏館
本站聲明
© NTU Library All Rights Reserved