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  1. NTU Theses and Dissertations Repository
  2. 醫學院
  3. 分子醫學研究所
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/56943
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor李秀香(Hsiu-Hsiang Lee)
dc.contributor.authorSih-Hua Chenen
dc.contributor.author陳思樺zh_TW
dc.date.accessioned2021-06-16T06:31:38Z-
dc.date.available2019-10-09
dc.date.copyright2014-10-09
dc.date.issued2014
dc.date.submitted2014-08-06
dc.identifier.citationBitan A, Guild GM, Bar-Dubin D, Abdu U (2010) Asymmetric microtubule function is an essential requirement for polarized organization of the Drosophila bristle. Mol Cell Biol 30(2):496-507.
Cam Patterson MD, Douglas M. Cyr PhD (2005) Ubiquitin-Proteasome Protocols. Methods in Molecular Biology 301: 243–254.
Cho-Park PF, Steller H (2013) Proteasome regulation by ADP-ribosylation. Cell 153(3):614-27.
Dubin-Bar D, Bitan A, Bakhrat A, Kaiden-Hasson R, Etzion S, Shaanan B, Abdu U (2008) The Drosophila IKK-related kinase (Ik2) and Spindle-F proteins are part of a complex that regulates cytoskeleton organization during oogenesis. BMC Cell Biol 9:51.
Finley D (2009) Recognition and processing of ubiquitin-protein conjugates by the proteasome. Annu Rev Biochem 78:477-513.
Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, Hao YL, Ooi CE, Godwin B, Vitols E, Vijayadamodar G, Pochart P, Machineni H, Welsh M, Kong Y, Zerhusen B, Malcolm R, Varrone Z, Collis A, Minto M, Burgess S, McDaniel L, Stimpson E, Spriggs F, Williams J, Neurath K, Ioime N, Agee M, Voss E, Furtak K, Renzulli R, Aanensen N, Carrolla S, Bickelhaupt E, Lazovatsky Y, DaSilva A, Zhong J, Stanyon CA, Finley RL Jr, White KP, Braverman M, Jarvie T, Gold S, Leach M, Knight J, Shimkets RA, McKenna MP, Chant J, Rothberg JM (2003) A protein interaction map of Drosophila melanogaster. Science 302(5651):1727-36.
Grueber WB, Jan LY, Jan YN (2002) Tiling of the Drosophila epidermis by multidendritic sensory neurons. Development 129(12):2867-78.
He J, Kulkarni K, da Fonseca PC, Krutauz D, Glickman MH, Barford D, Morris EP (2012) The structure of the 26S proteasome subunit Rpn2 reveals its PC repeat domain as a closed toroid of two concentric α-helical rings. Structure 20(3):513-21.
Kanamori T, Kanai MI, Dairyo Y, Yasunaga K, Morikawa RK, Emoto K (2013) Compartmentalized calcium transients trigger dendrite pruning in Drosophila sensory neurons. Science 340(6139):1475-8.
Kirilly D, Gu Y, Huang Y, Wu Z, Bashirullah A, Low BC, Kolodkin AL, Wang H, Yu F (2009) A genetic pathway composed of Sox14 and Mical governs severing of dendrites during pruning. Nat Neurosci 12(12):1497-505.
Kuo CT, Jan LY, Jan YN (2005) Dendrite-specific remodeling of Drosophila sensory neurons requires matrix metalloproteases, ubiquitin-proteasome, and ecdysone signaling. Proc Natl Acad Sci U S A 102(42):15230-5.
Kuo CT1, Zhu S, Younger S, Jan LY, Jan YN (2006) Identification of E2/E3 ubiquitinating enzymes and caspase activity regulating Drosophila sensory neuron dendrite pruning. Neuron 51(3):283-90.
Kuranaga E, Kanuka H, Tonoki A, Takemoto K, Tomioka T, Kobayashi M, Hayashi S, Miura M (2006) Drosophila IKK-related kinase regulates nonapoptotic function of caspases via degradation of IAPs. Cell 126(3):583-96.
Lander GC, Estrin E, Matyskiela ME, Bashore C, Nogales E, Martin A (2012) Complete subunit architecture of the proteasome regulatory particle. Nature 482(7384):186-91.
Lee HH, Jan LY, Jan YN (2009) Drosophila IKK-related kinase Ik2 and Katanin p60-like 1 regulate dendrite pruning of sensory neuron during metamorphosis. Proc Natl Acad Sci U S A 106(15):6363-8.
Lee T, Lee A, Luo L (1999) Development of the Drosophila mushroom bodies: sequential generation of three distinct types of neurons from a neuroblast. Development 126(18):4065-76.
Marin EC, Watts RJ, Tanaka NK, Ito K, Luo L (2005) Developmentally programmed remodeling of the Drosophila olfactory circuit. Development 132(4):725-37.
Saeki Y, Toh-E A, Kudo T, Kawamura H, Tanaka K (2009) Multiple proteasome-interacting proteins assist the assembly of the yeast 19S regulatory particle. Cell 137(5):900-13.
Shapiro RS, Anderson KV (2006) Drosophila Ik2, a member of the I kappa B kinase family, is required for mRNA localization during oogenesis. Development 133(8):1467-75.
Singh AP, VijayRaghavan K, Rodrigues V (2010) Dendritic refinement of an identified neuron in the Drosophila CNS is regulated by neuronal activity and Wnt signaling. Development 137(8):1351-60.
Sulkowski MJ, Kurosawa MS, Cox DN (2011) Growing pains: development of the larval nocifensive response in Drosophila. Biol Bull 221(3):300-6
Williams DW, Truman JW (2005) Cellular mechanisms of dendrite pruning in Drosophila: insights from in vivo time-lapse of remodeling dendritic arborizing sensory neurons. Development 132(16):3631-42.
Wong JJ, Li S, Lim EK, Wang Y, Wang C, Zhang H, Kirilly D, Wu C, Liou YC, Wang H, Yu F (2013) A Cullin1-based SCF E3 ubiquitin ligase targets the InR/PI3K/TOR pathway to regulate neuronal pruning. PLoS Biol 11(9):e1001657.
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Yu F, Schuldiner O (2014) Axon and dendrite pruning in Drosophila. Curr Opin Neurobiol 27C:192-198.
dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/56943-
dc.description.abstract神經系統是個複雜的網路,負責協調生物體內的各種訊號。為了因應內在發育的變化與外來環境的刺激,持續的重組對於神經迴路的精準連結非常重要,修剪(pruning)是神經重組(neuronal remodeling)的機制之一,同時也是一個不會導致細胞死亡而去移除多餘神經突觸的過程。此外,這個機制也被發現參與在神經系統的損傷與疾病中,但是調控神經修剪的分子機制目前仍不清楚。在果蠅中,第四型樹突神經細胞(class Ⅵ da neurons)會在果蠅變態過程中歷經大規模的神經樹突修剪。根據這項特性,第四型樹突神經細胞是一個很好的模式系統來了解神經修剪的分子運作機制。
之前的研究顯示在第四型樹突神經細胞中,一個稱為Ik2的絲胺酸/蘇胺酸激酶(Serine/Threonine kinase)會去磷酸化另一個含有螺旋區段(coiled-coil domain)的Spn-F蛋白,並與其交互作用去調控神經樹突修剪,然而,對於Ik2與Spn-F共同調控路徑的下游機制目前仍不清楚。在前人研究中,發現蛋白酶體(proteasome)中的一個亞單位─Rpn2,與Spn-F存在著交互作用,此外,泛素-蛋白酶體系統 (ubiquitin-proteasome system)已被證實參與在調控神經樹突修剪的機制中,再者,我們發現spn-F與rpn2兩者間存在著基因交互作用(genetic interaction),這結果暗示著他們有可能參與在同一條樹突修剪的調控路徑中,此外也觀察到在化蛹後16小時,Rpn2突變的神經會發生樹突修剪的缺失。因此,基於上述理由,我們假定蛋白酶體是Ik2與Spn-F的下游。
首先,我們確認了這兩個蛋白質之間用來互相結合的區域,分別是Spn-F上的C端高度保留區段(SCD domain)與鄰近序列和Rpn2的N端與PC重複區段。接著,為了研究Spn-F與Ik2是否有具有調控蛋白酶體的能力,我們利用非變性聚丙烯醯胺凝膠電泳(Native-PAGE)去測量蛋白酶體的數量,同時,也使用膠內肽酶檢定(in-gel peptidase assay)來量測蛋白酶體的活性。在細胞中分別大量表現Spn-F、磷酸化位點突變的Spn-F、Ik2和失去磷酸化功能的Ik2並不會影響蛋白酶體複合物(19S和26S)的數量與26S的活性。當我們分別降低細胞中Spn-F與Ik2的表現量,蛋白酶體複合物的數量與活性同樣不受影響。此外,同時降低Spn-F與Ik2的表現量,對於蛋白酶體而言不會有加成性的影響。總結來說,我們的研究指出Ik2與Spn-F並非透過調控蛋白酶體去影響神經樹突的修剪。
zh_TW
dc.description.abstractNeuronal system is a complicated network that coordinates multiple signals throughout the whole body. The continuous remodeling is crucial for the precise connection for neural circuitry adapting to internal changes during development or external stimuli from environment. Pruning, one of the neuronal remodeling mechanisms, is a self-destructive process to eliminate unnecessary neuronal processes without causing cell death. In addition, pruning also occurs in response to neural injury and disease. However, the molecular mechanism of neuronal pruning is still unclear. In Drosophila, class Ⅵ dendritic arborization (da) neurons will undergo a large-scale dendrite pruning during metamorphosis. Based on their characteristics, class Ⅵ da neurons provide an ideal model to study the underlying molecular mechanism of neuronal pruning.
Our studies showed that Ik2, a Serine/Threonine kinase, phosphorylates and interacts with Spn-F, a coiled-coil domain containing protein, to regulate dendrite pruning in class Ⅵ da neurons. However, the downstream effector of Ik2 and Spn-F is still unclear. Here, we identified a protein, Rpn2, which is a subunit of proteasome and has known as a Spn-F-interacting protein. Besides, Ubiquitin-proteasome system has been known to involve in the dendrite pruning process. Moreover, we found the pruning defect in da neurons of rpn2 mutant pupae at 16 h APF and also found that Spn-F has genetic interaction with Rpn2, which suggested that they may function in the same pathway in dendrite pruning. Thus, we hypothesized that proteasome is a downstream effector of Ik2 and SpnF in dendrite pruning.
First, we identified the interaction region between these two proteins. Both SCD domain and nearby sequence of SpnF are required for the interaction with Rpn2. On the other hands, Rpn2 interacts with Spn-F by its N-terminal and PC repeat domain. Next, to examine whether Spn-F and Ik2 can regulate proteasome, we performed Native PAGE to measure the amount of proteasome and in-gel peptidase assay for detecting proteasome activity in S2 cells. Overexpression of Spn-F, Spn-F phopho-mutants, Ik2 and Ik2 kinase-dead mutants respectively did not affect the amount of proteasome complexes (26S and 19S) and 26S activity in S2 cells, neither did knockdown of Spn-F or Ik2. Furthermore, double knockdown of Spn-F and Ik2 did not have synergistic effects. Taken together, our studies implicated that proteasome may not be the downstream effector of Spn-F and Ik2 in dendrite pruning.
en
dc.description.provenanceMade available in DSpace on 2021-06-16T06:31:38Z (GMT). No. of bitstreams: 1
ntu-103-R01448007-1.pdf: 1767559 bytes, checksum: 8a073e894cae8e234f4de2b85b4935cb (MD5)
Previous issue date: 2014
en
dc.description.tableofcontents論文口試委員會審定書
致謝
摘要.......................................................i
ABSTRACT.................................................iii
CONTENTS...................................................v
List of Tables...........................................vii
List of Figures.........................................viii
ChapterⅠ Introduction......................................1
1.Neuronal pruning.........................................1
2.Dendritic pruning in Class Ⅳ dendritic arborization (da) neurons....................................................1
3.Molecules involved in dendrite pruning...................2
4.Ik2 and Spn-F function together to regulate dendrite pruning....................................................3
5.Regulatory particle non-ATPase subunit 2 (Rpn2)..........4
6.Proteasome...............................................5
7.Hypothesis...............................................6
ChapterⅡ Materials and Methods.............................8
ChapterⅢ Results.........................................13
1.Domain mapping of Spn-F with Rpn2.......................13
1.1 Spn-F interacts with Rpn2 by SCD domain and 25 amino acids on the C-terminal tail region.......................13
1.2 N-terminal and PC repeat domain of Rpn2 are required for its interaction with Spn-F................................15
2.Proteasome level and activity are not altered by Spn-F and Ik2 in S2 cells...........................................16
2.1 Establish a method to detect the amount of proteasome and their activity in S2 cells............................16
2.2 Spn-F and Ik2 do not affect the amount of proteasome complexes and their activity..............................17
2.3 Spn-F is not the substrate of proteasome..............19
ChapterⅣ Discussion......................................20
1.The interaction between Spn-F and Rpn2 in dendrite pruning ..........................................................21
2.Low sensitivity for Native PAGE and in-gel peptidase assay in analysis of the amount of proteasome and their activity ..........................................................22
ChapterⅤ Reference.......................................23
Tables....................................................28
Figures...................................................30
dc.language.isoen
dc.subject神經樹突修剪zh_TW
dc.subjectIk2zh_TW
dc.subjectSpn-Fzh_TW
dc.subjectRpn2zh_TW
dc.subject蛋白?體zh_TW
dc.subjectproteasomeen
dc.subjectIk2en
dc.subjectdendrite pruningen
dc.subjectSpnidle-F (Spn-F)en
dc.subjectRpn2en
dc.title果蠅Rpn2與Spn-F交互作用之研究zh_TW
dc.titleThe interaction of Rpn2 and Spn-F in Drosophilaen
dc.typeThesis
dc.date.schoolyear102-2
dc.description.degree碩士
dc.contributor.oralexamcommittee吳君泰(June-Tai Wu),皮海薇(Hai-wei Pi)
dc.subject.keyword神經樹突修剪,Ik2,Spn-F,Rpn2,蛋白?體,zh_TW
dc.subject.keyworddendrite pruning,Ik2,Spnidle-F (Spn-F),Rpn2,proteasome,en
dc.relation.page44
dc.rights.note有償授權
dc.date.accepted2014-08-06
dc.contributor.author-college醫學院zh_TW
dc.contributor.author-dept分子醫學研究所zh_TW
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