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  1. NTU Theses and Dissertations Repository
  2. 公共衛生學院
  3. 流行病學與預防醫學研究所
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/54803
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor李文宗
dc.contributor.authorYa-Hui Yangen
dc.contributor.author楊雅惠zh_TW
dc.date.accessioned2021-06-16T03:38:50Z-
dc.date.available2020-03-12
dc.date.copyright2015-03-12
dc.date.issued2015
dc.date.submitted2015-02-25
dc.identifier.citation1. McCarthy, M.I., Abecasis, G.R., Cardon, L.R., Goldstein, D.B., Little, J., Ioannidis, J.P.A. and Hirschhorn, J.N. (2008) Genome-wide association studies for complex traits: consensus, uncertainty and challenges. Nature Reviews Genetics 9, 356-369
2. Cheung, V.G., Spielman, R.S., Ewens, K.G., Weber, T.M., Morley, M. and Burdick, J.T. (2005) Mapping determinants of human gene expression by regional and genome-wide association. Nature 437, 1365-1369.
3. Zeggini, E., Scott, L.J., Saxena, R., Voight, B.F., Marchini, J.L., Hu, T., de Bakker, P.IW, Abecasis, G.R., Almgren, P., Andersen, G., Ardlie, K., Bostrom, K.B., Bergman, R.N., Bonnycastle, L.L., Borch-Johnsen, K., Burtt, N.P., Chen, H., Chines, P.S., Daly, M.J., Deodhar, P., Ding, C.J., Doney, A.S.F., Duren, W.L., Elliott, K.S., Erdos, M.R., Frayling, T.M., Freathy, R.M., Gianniny, L., Grallert, H., Grarup, N., Groves, C.J., Guiducci, C., Hansen, T., Herder, C., Hitman, G.A., Hughes, T.E., Isomaa, B., Jackson, A.U., Jorgensen, T., Kong, A., Kubalanza, K., Kuruvilla, F.G., Kuusisto, J., Langenberg, C., Lango, H., Lauritzen, T., Li, Y., Lindgren, C.M., Lyssenko, V., Marvelle, A.F., Meisinger, C., Midthjell, K., Mohlke, K.L., Morken, M.A., Morris, A.D., Narisu, N., Nilsson, P., Owen, K.R., Palmer, C.N., Payne, F., Perry, J.R.B., Pettersen, E., Platou, C., Prokopenko, I., Qi, L., Qin, L., Rayner, N.W., Rees, M., Roix, J.J., Sandbak, A., Shields, B., Sjogren, M., Steinthorsdottir, V., Stringham, H.M., Swift, A.J., Thorleifsson, G., Thorsteinsdottir, U., Timpson, N.J., Tuomi, T., Tuomilehto, J., Walker, M., Watanabe, R.M., Weedon, M.N., Willer, C.J., Wellcome Trust Case Control Consortium, Illig, T., Hveem, K., Hu, F.B., Laakso, M., Stefansson, K., Pedersen, O., Wareham, N.J., Barroso, I., Hattersley, A.T., Collins, F.S., Groop, L., McCarthy, M.I., Boehnke, M. and Altshuler, D. (2008) Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes. Nature Genetics 40, 638-645
4. Wang, K., Li, M. and Hakonarson, H. (2010) Analyzing biological pathways in genome-wide association studies. Nature Reviews Genetics 11, 843-854.
5. Benjamini, Y. and Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Statist. Soc. B 57, 289-300.
6. Storey, J.D. (2002). A direct approach to false discovery rates. J. R. Statist. Soc. B 64, 479-98.
7. Kvam, V.M., Liu, P. and Si, Y. (2012). A comparison of statistical methods for detecting differentially expressed genes form RNA-Seq data. American Journal of Botany 99(2), 248-256.
8. Yu, D., Huber, W. and Vitek, O. (2013). Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size. Bioinformatics 29(10), 1275-1282
9. Leek, J.T., Scharpf, R.B., Bravo, H.C., Simcha, D., Langmead, B., Johnson, W.E., Geman, D., Baggerly, K. and Irizarry, R.A. (2010). Tackling the widespread and critical impact of batch effects in high-throughput data. Nature Reviews Genetics 11, 733-739
10. Xie, Y., Pan, W. and Khodursky, A.B. (2005). A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data. Bioinformatics 21, 4280-4288.
11. Klaus B. and Strimmer K. fdrtool: estimation of (local) false discovery rates and higher criticism. R package version 1.2.12. http://CRAN.R-project.org/package=fdrtool.
12. Chittezhath M, Dhillon M.K., Lim J.Y., Laoui D., Shalova, I.N., Teo, Y.L., Chen, J., Kamaraj, R., Raman, L., Lum, J., Thamboo, T.P., Chiong, E., Zolezzi, F., Yang, H., Van Ginderachter, J.A., Poidinger, M., Wong, A.S.C. and Biswas, S.K. (2014). Molecular profiling reveals a tumor-promoting phenotype of monocytes and macrophages in human cancer progression. Immunity 41(5), 815-29.
13. Kulinskaya, E. and Lewin, A. (2009). On fuzzy familywise error rate and false discovery rate procedures for discrete distributions. Biometrika 96, 201-211.
dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/54803-
dc.description.abstract生物醫學研究者進行研究時,經常會遇到大p小n的情境—個案數很少,但測量變數卻很多。我們提出模糊置換法,以解決小樣本情況下的多重檢定問題。此方法引進模糊量至標準置換法中產生隨機p值,而後轉換成q值以控制錯誤發現率。蒙地卡羅模擬顯示,我們的方法在資料是常態或非常態的情況下,都有良好的統計性質。我們分析一筆實際資料,作為範例。大p小n的情境下,我們推薦使用本研究提出的模糊置換法。zh_TW
dc.description.abstractBiomedical researchers often encounter the large-p-small-n situations—a great number of variables are measured/recorded for only a few subjects. The authors propose a fuzzy permutation method to address the multiple testing problem for small sample size studies. The method introduces fuzziness into standard permutation analysis to produce randomized p-values, which are then converted into q-values for false discovery rate controls. Monte-Carlo simulations show that the proposed method has desirable statistical properties when the study variables are normally or non-normally distributed. A real dataset is analyzed to illustrate its use. The proposed fuzzy permutation method is recommended for use in the large-p-small-n settings.en
dc.description.provenanceMade available in DSpace on 2021-06-16T03:38:50Z (GMT). No. of bitstreams: 1
ntu-104-R01849015-1.pdf: 327916 bytes, checksum: 8f20013e062a1a703fbd67dc8b2c0336 (MD5)
Previous issue date: 2015
en
dc.description.tableofcontents中文摘要 ii
Abstract iii
List of Figures v
List of Tables vi
Introduction 1
Methods 3
Simulation Study 5
An Example 8
Discussion 10
Reference 11
Figure Legends 15
Appendix 1 23
Appendix 2 24
Appendix 3 25
dc.language.isoen
dc.subject置換法zh_TW
dc.subject蒙地卡羅模擬zh_TW
dc.subject多重比較zh_TW
dc.subject錯誤發現率zh_TW
dc.subject隨機p值zh_TW
dc.subjectfalse discovery rateen
dc.subjectmultiple comparisonsen
dc.subjectMonte-Carlo simulationen
dc.subjectpermutationen
dc.subjectrandomized p-valuesen
dc.title錯誤發現率控制之模糊置換法zh_TW
dc.titleA Fuzzy Permutation Method for False Discovery Rate Controlen
dc.typeThesis
dc.date.schoolyear103-1
dc.description.degree碩士
dc.contributor.oralexamcommittee蔡政安,蕭朱杏,林菀俞
dc.subject.keyword錯誤發現率,多重比較,隨機p值,置換法,蒙地卡羅模擬,zh_TW
dc.subject.keywordfalse discovery rate,multiple comparisons,randomized p-values,permutation,Monte-Carlo simulation,en
dc.relation.page25
dc.rights.note有償授權
dc.date.accepted2015-02-25
dc.contributor.author-college公共衛生學院zh_TW
dc.contributor.author-dept流行病學與預防醫學研究所zh_TW
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