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請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/50421
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor王宗興
dc.contributor.authorPeng-Hsun Chenen
dc.contributor.author陳芃勳zh_TW
dc.date.accessioned2021-06-15T12:40:04Z-
dc.date.available2017-08-24
dc.date.copyright2016-08-24
dc.date.issued2015
dc.date.submitted2016-07-27
dc.identifier.citationReferences
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29. Amin, S. A.; Green, D. H.; Hart, M. C.; Küpper, F. C.; Sunda, W. G.; Carrano, C. J. 'Photolysis of iron–siderophore chelates promotes bacterial–algal mutualism.' Proceedings of the National Academy of Sciences 2009, 106, 17071-17076.
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34. Yamamoto, S.; Okujo, N.; Yoshida, T.; Matsuura, S.; Shinoda, S. 'Structure and iron transport activity of vibrioferrin, a new siderophore of Vibrio parahaemolyticus.' Journal of Biochemistry 1994, 115, 868-874.
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37. Yarimizu, K.; Polido, G.; Gärdes, A.; Carter, M. L.; Hilbern, M.; Carrano, C. J. 'Evaluation of photo-reactive siderophore producing bacteria before, during and after a bloom of the dinoflagellate Lingulodinium polyedrum.' Metallomics 2014, 6, 1156-1163.
38. Amin, S. A.; Küpper, F. C.; Green, D. H.; Harris, W. R.; Carrano, C. J. 'Boron binding by a siderophore isolated from marine bacteria associated with the toxic dinoflagellate Gymnodinium catenatum.' Journal of the American Chemical Society 2007, 129, 478-479.
39. Harris, W. R.; Amin, S. A.; Küpper, F. C.; Green, D. H.; Carrano, C. J. 'Borate binding to siderophores: structure and stability.' Journal of the American Chemical Society 2007, 129, 12263-12271.
40. Tanabe, T.; Funahashi, T.; Nakao, H.; Miyoshi, S.-I.; Shinoda, S.; Yamamoto, S. 'Identification and characterization of genes required for biosynthesis and transport of the siderophore vibrioferrin in Vibrio parahaemolyticus.' Journal of Bacteriology 2003, 185, 6938-6949.
41. León-Sicairos, N.; Angulo-Zamudio, U. A.; de la Garza, M.; Velázquez-Román, J.; Flores-Villaseñor, H. M.; Canizalez-Román, A. 'Strategies of Vibrio parahaemolyticus to acquire nutritional iron during host colonization.' Frontiers in Microbiology 2015, 6.
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44. Takeuchi, Y.; Nagao, Y.; Toma, K.; Yoshikawa, Y.; Akiyama, T.; Nishioka, H.; Abe, H.; Harayama, T.; Yamamoto, S. 'Synthesis and Siderophore Activity of Vibrioferrin and One of Its Diastereomeric Isomers.' Chemical and Pharmaceutical Bulletin 1999, 47, 1284-1287.
45. Brunet, A.; Aslam, T.; Bradley, M. 'Separating the isomers—Efficient synthesis of the N-hydroxysuccinimide esters of 5 and 6-carboxyfluorescein diacetate and 5 and 6-carboxyrhodamine B.' Bioorganic & Medicinal Chemistry Letters 2014, 24, 3186-3188.
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47. Funahashi, T.; Moriya, K.; Uemura, S.; Miyoshi, S.-i.; Shinoda, S.; Narimatsu, S.; Yamamoto, S. 'Identification and characterization of pvuA, a gene encoding the ferric vibrioferrin receptor protein in Vibrio parahaemolyticus.' Journal of Bacteriology 2002, 184, 936-946.
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dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/50421-
dc.description.abstract弧菌(Vibrio)為一與人類生活高度相關之革蘭氏陰性菌之菌屬。鑑於這些微生物其所造成的疾病已在全球不斷增長,此促使我們想開發一個弧菌專屬的探針。為此,於本研究中,我們將目標放在一個在限鐵環境下會被諸多細菌所運用之運鐵機制,機制中細菌利用一與鐵具有高親和力的特定小分子稱鐵載體(siderophore)來螯取環境中鐵資源,並專一地將鐵給運送至特定菌種上。利用此途徑我們可藉此建構一個高效率且專一用以標記出弧菌的方法。在此我們先官能基化一個由副溶血弧菌(V. parahaemolyticus)所分泌的鐵載體 vibrioferrin,而得到一個延伸物,並於該物上銜接一個具有炔結構的化合物以便與一含有疊氮結構之螢光素(fluorescein)進行銅催化之疊氮與炔的環加成反應而得到最終產物 VSP1。利用流式細胞術,我們發現在限鐵條件下,在經由 VSP1 處置過後,除了副溶血弧菌外在其他弧菌如霍亂弧菌(V. cholerae)及創傷弧菌(V. vulnificus)上皆可觀察到明顯的螢光反應。而在其他物種如金黃色葡萄球菌(S. aureus)、枯草桿菌(B. subtilis)、大腸桿菌(E. coli)及腸道沙門氏菌(S. enterica)上則無顯著差異。至於在鐵充足的條件下,則所有的細菌當中皆無呈現螢光增強反應。另外在螢光顯微圖上,也可觀察到探針的物種選擇性。當中,在經由我們的探針處置過後,只有弧菌方能被標記於在螢光顯微圖上,而其他菌種如金黃色葡萄球菌及大腸桿菌則無法被顯示出來。這些實驗結果指出我們所開發出的探針,其在限鐵環境下能用於選擇偵測弧菌的潛力。此外,其於霍亂弧菌與創傷弧菌上所顯示的結果,也代表著 vibrioferrin 可能為一可供其他物種使用之鐵載體。zh_TW
dc.description.abstractVibrio is a genus of gram-negative bacteria that is highly relevant to our life. Given that illnesses caused by these microbes have escalating globally, it behooves us to develop a Vibrio-specific probe. To this end, we take our aim at iron acquisition mechanism mediated by siderophore, a small molecule used to specifically transport iron into bacteria under iron-limited condition. By hijacking the pathway, we may find us an efficient and specific way to label Vibrio spp. Herein we first functionalize vibrioferrin (VF), a siderophore secreted by V. parahaemolyticus. Then an alkyne-containing linker is harbored onto this siderophore analog to undergo copper catalyzed azide-alkyne cycloaddition with an azdio-containing fluorescein. On flow cytometry, upon treatment with our probe, VSP1, under iron-limited conditions, significant fluorescent increases can be found not only in its secretor, V. parahaemolyticus but also in other vibrio spp., V. cholerae and V. vulnificus, while no differences are observed in S. aureus, B. subtilis, E. coli and S. enterica. On the contract, when in an iron-rich media, no enhancements are observed in the bacteria tested. The strain dependency is also demonstrated on fluorescent images, where vibrios can be labelled, while S. aureus and E. coli give no response. The results suggest that our probe has the potential for specific labelling vibrios under ironlimited condition. In addition, the unexpected outcome given by V. cholerae and V. vulnificus, indicating VF may be an undiscovered xenosiderophore.en
dc.description.provenanceMade available in DSpace on 2021-06-15T12:40:04Z (GMT). No. of bitstreams: 1
ntu-104-R02223176-1.pdf: 13474668 bytes, checksum: 77d11ba2064aaa8ce6fac1e115d9bdd6 (MD5)
Previous issue date: 2015
en
dc.description.tableofcontentsContents
Abstract (Chinese) i
Abstract ii
List of Figures iii
List of Tables viii
Abbreviations ix
Chapter 1 Introduction 1
1.1 Introduction to Vibrio species 1
1.1.1 Overview of Vibrio species 1
1.1.2 V. parahaemolyticus 1
1.1.3 V. cholerae 2
1.1.4 V. vulnificus 4
1.2 Methods for detecting vibrios species nowadays 5
1.2.1 TCBS agar 5
1.2.2 ELISA 7
1.2.3 PCR 8
1.3 Siderophore-mediated iron acquisition 8
1.3.1 Iron acquisition of bacteria 9
1.3.2 Siderophore 12
1.3.3 Siderophore of Vibrio 14
1.3.4 Vibrioferrin as target siderophore 15
1.4 Research on siderophore conjugates 18
Chapter 2 Results 20
2.1 Design rationale of target compound 20
2.1.1 Conjugation strategy 20
2.1.2 Choosing the components 21
2.1.3 Visions of our probe 24
2.2 Development of VSP1 26
2.2.1 Retrosynthetic analysis of VSP1 26
2.2.2 Design and analysis of building blocks 27
2.2.3 Walkthrough for VSP1 synthesis 32
2.3 Characteristic features of VSP1 37
2.3.1 Chirality generation 37
2.3.2 Photolysis 39
2.3.3 Boron binding 40
2.4 Biological experiment results 41
2.4.1 Flow cytometry results 41
2.4.2 Fluorescence microscopy results 47
2.5 Extended research 53
2.6 Future works 55
Chapter 3 Conclusions 56
Chapter 4 Experimental sections 57
4.1 Chemical synthesis 57
4.1.1 General information 57
4.1.2 Experimental procedure 58
4.2 Biological experiments 81
4.2.1 Material 81
4.2.2 Instrumentation 82
4.2.3 Flow cytometry 82
4.2.4 Fluorescence microscopy 83
Reference 85
Appendix I 1H, 13C, and 1H-1H 2D NMR spectra 91
Appendix II HPLC spectrum of VSP1 148
Appendix III Flow cytometry data 150
dc.language.isoen
dc.subject鐵載體zh_TW
dc.subject選擇性標記zh_TW
dc.subject螢光探針zh_TW
dc.subject鐵載體zh_TW
dc.subject弧菌zh_TW
dc.subject選擇性標記zh_TW
dc.subject弧菌zh_TW
dc.subject螢光探針zh_TW
dc.subjectspecific labellingen
dc.subjectvibriosen
dc.subjectspecific labellingen
dc.subjectvibriosen
dc.subjectvibrioferrinen
dc.subjectsiderophoreen
dc.subjectiron acquisitionen
dc.subjectsiderophoreen
dc.subjectiron acquisitionen
dc.subjectvibrioferrinen
dc.title以鐵載體為基礎的探針開發及其於弧菌感測上之應用zh_TW
dc.titleDevelopment of Siderophore-Based Fluorescent Probe for Vibrios Detectionen
dc.typeThesis
dc.date.schoolyear104-2
dc.description.degree碩士
dc.contributor.oralexamcommittee徐承志,黃顯宗
dc.subject.keyword弧菌,鐵載體,螢光探針,選擇性標記,zh_TW
dc.subject.keywordvibrios,iron acquisition,siderophore,vibrioferrin,specific labelling,en
dc.relation.page175
dc.identifier.doi10.6342/NTU201601432
dc.rights.note有償授權
dc.date.accepted2016-07-28
dc.contributor.author-college理學院zh_TW
dc.contributor.author-dept化學研究所zh_TW
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