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http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/48338完整後設資料紀錄
| DC 欄位 | 值 | 語言 |
|---|---|---|
| dc.contributor.advisor | 蘇怡寧(Su, Yi-Ning , M.D./ Ph.D.) | |
| dc.contributor.author | Shu-Yun Jan | en |
| dc.contributor.author | 詹詩昀 | zh_TW |
| dc.date.accessioned | 2021-06-15T06:53:04Z | - |
| dc.date.available | 2011-03-03 | |
| dc.date.copyright | 2011-03-03 | |
| dc.date.issued | 2011 | |
| dc.date.submitted | 2011-02-13 | |
| dc.identifier.citation | 1. Shields, C.L. and J.A. Shields, Basic understanding of current classification and management of retinoblastoma. Curr Opin Ophthalmol, 2006. 17(3): p. 228-34.
2. Lin, P. and J.M. O'Brien, Frontiers in the management of retinoblastoma. Am J Ophthalmol, 2009. 148(2): p. 192-8. 3. Leiderman, Y.I., S. Kiss, and S. Mukai, Molecular genetics of RB1--the retinoblastoma gene. Semin Ophthalmol, 2007. 22(4): p. 247-54. 4. Burkhart, D.L. and J. Sage, Cellular mechanisms of tumour suppression by the retinoblastoma gene. Nat Rev Cancer, 2008. 8(9): p. 671-82. 5. Lohmann, D.R. and B.L. Gallie, Retinoblastoma: revisiting the model prototype of inherited cancer. Am J Med Genet C Semin Med Genet, 2004. 129C(1): p. 23-8. 6. Thiagalingam, S., et al., Loss of heterozygosity as a predictor to map tumor suppressor genes in cancer: molecular basis of its occurrence. Curr Opin Oncol, 2002. 14(1): p. 65-72. 7. Happle, R., Loss of heterozygosity in human skin. J Am Acad Dermatol, 1999. 41(2 Pt 1): p. 143-64. 8. Ohtani-Fujita, N., et al., Hypermethylation in the retinoblastoma gene is associated with unilateral, sporadic retinoblastoma. Cancer Genet Cytogenet, 1997. 98(1): p. 43-9. 9. Stirzaker, C., et al., Extensive DNA methylation spanning the Rb promoter in retinoblastoma tumors. Cancer Res, 1997. 57(11): p. 2229-37. 10. Lohmann DR, Scheffer H, Gallie BL 2002, Best practice guidelines for molecular analysis of retinoblastoma. [cited 2006 Feb 7]: [about 6 p.]. Available from: http://www.emqn.org. 11. Nichols, K.E., et al., Sensitive multistep clinical molecular screening of 180 unrelated individuals with retinoblastoma detects 36 novel mutations in the RB1 gene. Hum Mutat, 2005. 25(6): p. 566-74. 12. MRC-Holland (http://www.mrc-holland.com) 13. Choy, K.W., et al., Loss of heterozygosity and mutations are the major mechanisms of RB1 gene inactivation in Chinese with sporadic retinoblastoma. Hum Mutat, 2002. 20(5): p. 408. 14. Zhang, X.L., et al., Molecular studies of loss of heterozygosity in Chinese sporadic retinoblastoma patients. Clin Chim Acta, 2005. 358(1-2): p. 75-80. 15. de Andrade, A.F., et al., A molecular study of first and second RB1 mutational hits in retinoblastoma patients. Cancer Genet Cytogenet, 2006. 167(1): p. 43-6. 16. Chang, S.C., et al., Loss of heterozygosity: an independent prognostic factor of colorectal cancer. World J Gastroenterol, 2005. 11(6): p. 778-84. 17. Valverde, J.R., et al., RB1 gene mutation up-date, a meta-analysis based on 932 reported mutations available in a searchable database. BMC Genet, 2005. 6: p. 53. 18. Tom Strachan, Andrew P. Read. (2004). Human Molecular Genetics,3/e 19. Lou, W., et al., Methylation of the CD44 metastasis suppressor gene in human prostate cancer. Cancer Res, 1999. 59(10): p. 2329-31. 20. Kito, H., et al., Hypermethylation of the CD44 gene is associated with progression and metastasis of human prostate cancer. Prostate, 2001. 49(2): p. 110-5. 21. Goldberg, Y., et al., An Ashkenazi founder mutation in the MSH6 gene leading to HNPCC. Fam Cancer, 2010. 9(2): p. 141-50. 22. Danbara, M., et al., DNA methylation dominates transcriptional silencing of Pax5 in terminally differentiated B cell lines. Mol Immunol, 2002. 38(15): p. 1161-6. 23. Palmisano, W.A., et al., Aberrant promoter methylation of the transcription factor genes PAX5 alpha and beta in human cancers. Cancer Res, 2003. 63(15): p. 4620-5. 24. Abramson, D.H., et al., Superselective ophthalmic artery chemotherapy as primary treatment for retinoblastoma (chemosurgery). Ophthalmology, 2010. 117(8): p. 1623-9. 25. Houdayer, C., et al., Comprehensive screening for constitutional RB1 mutations by DHPLC and QMPSF. Hum Mutat, 2004. 23(2): p. 193-202. 26. Richter, S., et al., Sensitive and efficient detection of RB1 gene mutations enhances care for families with retinoblastoma. Am J Hum Genet, 2003. 72(2): p. 253-69. 27. Tsai, T., et al., Rapid identification of germline mutations in retinoblastoma by protein truncation testing. Arch Ophthalmol, 2004. 122(2): p. 239-48. 28. Castera, L., et al., MDM2 as a modifier gene in retinoblastoma. J Natl Cancer Inst, 2010. 102(23): p. 1805-8. | |
| dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/48338 | - |
| dc.description.abstract | 視網膜母細胞瘤(Retinoblastoma,RB)為癌症的抑制基因RB1基因發生突變而導致在視網膜產生惡性腫瘤。為了有利於患者的分類及提供最適當的遺傳諮詢我們建立多步驟檢測流程以檢測RB1基因之突變。多步驟檢測流程包含以DNA sequencing 針對RB1基因的檢測27個exon及其兩側intron區域的突變;Multiplex Ligation-dependent Probe Amplification(MLPA)相對定量的技術平台檢測RB1基因的基因劑量變異;及以MS-MLPA(methylation specific-MLPA)進行RB1基因啟動子甲基化偵測。我們總共收集了63位患者,只提供血液檢體的有41位患者,檢測出RB1基因生殖細胞突變在17位雙側的患者中有16位(94.1%); 在24位單側的患者中有5位(20.8%);同時提供腫瘤組織及血液檢體的有22位患者,檢測出RB1基因生殖細胞突變在5位雙側的患者中有5位(100%),在17位單側的患者中有3位為生殖細胞突變7位為體細胞突變(58.8%)。在22個腫瘤組織檢體中,其中有13個(59.1%)檢測出有異型合子性狀消失(Loss of Heterozygosity,LoH);有一個(4.5%)腫瘤組織檢體檢測出有RB1基因啟動子的甲基化。我們檢測出RB1基因的兩個對偶基因突變,且其中有部分檢體突變符合雙擊假說;另有些檢體檢測出RB1一個對偶基因的突變;仍有檢體沒有檢測出突變。然而,經由MS-MLPA的結果,我們推測這沒有檢測到RB1基因突變的單側腫瘤檢體,還有其他的遺傳機制或基因導致RB腫瘤的產生。藉由基因分析結果給予視網膜母細胞瘤的患者最適當的遺傳諮詢。 | zh_TW |
| dc.description.abstract | Retinoblastoma (RB) is a neoplasm of retinal origin caused by mutations in RB1 gene, the retinoblastoma tumor suppressor gene. To facilitate patient classification and to provide proper genetics counseling, we adopted a multistep molecular screening protocol for detecting RB1 mutations. This protocol included DNA sequencing to identify mutations within coding exons and immediate flanking intronic regions, Multiplex Ligation-dependent Probe Amplification (MLPA) to detect RB1 gene deletions or duplications, MS-MLPA (methylation specific-MLPA) to detect methylation the promoter of RB1 gene. We have collected samples from a total of 63 RB patients. In the 41 patients who have provided peripheral blood, we identified germline RB1 mutations in 16 out of 17 bilateral RB patients (94.1%), and 5 out of 24 unilateral patients (20.8%). In the 22 patients who provided both peripheral blood and tumor tissues, we identified germline RB1 mutations in 5 out of 5 bilateral RB patients (100%), 3 out of 17 unilateral patients, and somatic RB1 mutations in 7 out of 17 unilateral patients (58.8%). In the 22 tumor tissues provided, a total of 13 patients (59.1%) showed loss of heterozygosity (LoH), while only one patient was detected with promotor methylation of RB1 gene (4.5%). We have identified biallelic RB1 gene inactivation, and some conformed with 'Two-Hits Hypothesis'. In some of the samples, only one of the two RB1 mutations was detected. However, there remained some samples with no mutations detected. Nevertheless, from the MS-MLPA result, the absence of detectable RB1 mutations in the unilateral tumors is presumed to be caused by other genetic mechanisms or genes in the development of RB. Through this genetic diagnosis, we hope to provide the most suitable genetic counseling for Retinoblastoma patients. | en |
| dc.description.provenance | Made available in DSpace on 2021-06-15T06:53:04Z (GMT). No. of bitstreams: 1 ntu-100-P97448001-1.pdf: 2376254 bytes, checksum: bec703d907f51764b1a7f33fe480d0eb (MD5) Previous issue date: 2011 | en |
| dc.description.tableofcontents | 口試委員會審定書……………………………………………………………………..I
誌謝…………………………………………………………………………………….II 中文摘要………………………………………………………………………………III 英文摘要………………………………………………………………………………IV 內文目錄……………………………………………………………………………….V 圖目錄……………………………………………………………………………….VIII 表目錄…………………………………………………………………………………IХ 第一章 研究背景與動機……………………………………………………………1 1.1 視網膜母細胞瘤的簡介……………………………………………………1 1.2 視網膜母細胞瘤的病因學………………………………………………….3 1.2.1 腫瘤的抑制基因:RB1基因……………………………………….3 1.2.2 雙擊假說(Two-Hits Hypothesis)……………………………………4 1.2.3 異型合子性狀消失(Loss of Heterozygosity,LoH)………………5 1.2.4 啟動子甲基化(Methylation)……………………………………….7 1.3 視網膜母細胞瘤的分子檢測方式…………………………………………..7 1.4 研究動機……………………………………………………………………8 第二章 研究方法……………………………………………………………………...12 2.1 研究樣本……………………………………………………………………12 2.1.1 石蠟包埋的腫瘤組織切片檢體之DNA萃取………………………...12 2.1.2 周邊血液檢體之DNA萃取…………………………………………...12 2.1.3 量測DNA濃度及純度…………………………………………...........13 2.2 DNA sequencing analysis …………………………………………..............13 2.3 MLPA(Multiplex Ligation-dependent Probe Amplification)analysis.......13 2.4 Loss of Heterozygosity analysis…………………………………….............14 2.5 MS-MLPA(Methylation-specific MLPA)analysis………….................14 第三章 研究結果…………….......................................................................................16 3.1 建立多步驟檢測流程....................................................................................16 3.2 MLPA及DNA sequencing analysis突變偵測結果........................................17 3.2.1 血液檢體檢測結果.............................................................................17 3.2.2 腫瘤組織檢體檢測結果.....................................................................17 3.2.3 DNA sequencing analysis結果分析....................................................17 3.2.4 MLPA analysis結果分析....................................................................18 3.3 異型合子性狀消失的結果..............................................................................19 3.4 啟動子甲基化的結果......................................................................................20 第四章 討論...................................................................................................................21 4.1 視網膜母細胞瘤基因型與表現型之間關係..................................................21 4.2 多步驟檢測流程之檢測率探討......................................................................22 4.3 RB1基因突變點位之探討.............................................................................22 4.4 關於腫瘤組織檢體之探討..............................................................................23 4.4.1 腫瘤組織的檢體微衛星不穩定性(microsatellite instability, MSI)23 4.4.2 腫瘤組織的檢體被正常組織的污染...............................................24 4.4.3 缺少腫瘤組織的檢體...........................................................................24 4.5 MS-MLPA analysis結果的探討....................................................................25 4.5.1 甲基化檢測方法的探討.......................................................................25 4.5.2 MS-MLPA analysis.............................................................................25 4.5.2.1 25個癌症抑制基因劑量變化..................................................25 4.5.2.2 25個癌症抑制基因甲基化分析..............................................26 4.6 41個血液檢體之討論....................................................................................28 4.7 22個腫瘤組織檢體之討論..............................................................................28 4.8 視網膜母細胞瘤的新治療方法......................................................................30 4.9 目前臨床檢測方式限制與探討......................................................................31 第五章 結論...................................................................................................................33 5.1 視網膜母細胞瘤的基因檢測............................................................................33 5.2 基因檢測對遺傳諮詢的益處............................................................................33 第六章 參考資料...........................................................................................................35 圖目錄 圖一 視網膜母細胞瘤的五期分類……………………………………………38 圖二 pRB的功能………………………………………………………………39 圖三 LoH發生的機制…………………………………………………………40 圖四 MLPA的原理…………………………………………………………….41 圖五 MS-MLPA的原理………………………………………………………..42 圖六 RB1基因多步驟檢測流程圖……………………………………………43 圖七 RB樣本檢測流程圖……………………………………………………..43 圖八 MLPA之生殖細胞突變結果…………………………………………….44 圖九 Sequencing之生殖細胞突變結果……………………………………….44 圖十 MLPA之體細胞突變結果……………………………………………….45 圖十一 Sequencing之體細胞突變結果………………………………………….45 圖十二 異型合子性狀消失的結果……………………………………………….46 圖十三 異型合子性狀消失的結果(減少33%)………………………………….46 圖十四 異型合子性狀消失的結果總整理……………………………………….47 圖十五 個案65啟動子甲基化的結果…………………………………………...48 圖十六 個案42(圖左)及個案62(圖右)啟動子甲基化的結果……………….49 圖十七 腫瘤組織檢體微衛星不穩定性………………………………………….50 圖十八 重亞硫酸鈉鹽(sodium bisulfite)處理………………………………….51 圖十九 個案47之MS-MLPA 基因劑量變化結果………………………………52 圖二十 個案38血液檢體之MS-MLPA 基因劑量變化結果……………………53 圖二十一 個案38血液檢體之RB1 MLPA結果……………………………………54 圖二十二 個案38血液檢體之BRCA2 MLPA結果……………………………….55 圖二十三 個案38血液檢體之Oligo HD ScanTM結果…………………………….56 表目錄 表一 RB1 gene sequencing primer………………………………………………..57 表二 SALSA MLPA P047 probemix…………………………………………….....59 表三 STRP marker 序列………………………………………………...................61 表四 SALSA MS-MLPA ME002-A1 Tumor suppressor probemix………...........…62 表五 血液檢體之MLPA及Sequencing結果…………..........................................64 表六 腫瘤組織及血液檢體MLPA及Sequencing結果…………..........................65 表七 22位腫瘤組織個案LoH 分析結果………....................................................66 表八 22位腫瘤組織個案之MLPA、Sequencing及LoH結果……........................77 表九 22位腫瘤組織個案之MLPA、Sequencing、LoH、Methylation結果……..78 表十 RB1基因檢測率之比較表.............................................79 表十一 RB1基因突變點位分析表.......................................80 表十二 25個癌症抑制基因甲基化分析...........................................81 表十三 符合雙擊假說的個案............................................82 表十四 13號染色體長臂缺失的個案……........................................82 表十五 一個對偶基因為點突變另一個為甲基化….............................................. 表十六 沒有檢測出突變有LoH發生……...............................................83 表十七 一個對偶基因的突變…….................................................84 表十八 兩個對偶基因的突變……..................................................84 表十九 沒有任何突變被檢測……....................................................84 | |
| dc.language.iso | zh-TW | |
| dc.subject | 異型合子性狀消失 | zh_TW |
| dc.subject | 癌症的抑制基因 | zh_TW |
| dc.subject | 視網膜母細胞瘤 | zh_TW |
| dc.subject | 雙擊假說 | zh_TW |
| dc.subject | 體細胞突變 | zh_TW |
| dc.subject | 生殖細胞突變 | zh_TW |
| dc.subject | Somatic mutation | en |
| dc.subject | Germline mutation | en |
| dc.subject | Loss of heterozygosity (LoH) | en |
| dc.subject | Tumor suppressor gene | en |
| dc.subject | Two-Hits Hypothesis | en |
| dc.subject | Retinoblastoma (RB) | en |
| dc.title | 視網膜母細胞瘤之基因診斷與遺傳諮詢 | zh_TW |
| dc.title | Genetic Diagnosis and Counseling of Retinoblastoma | en |
| dc.type | Thesis | |
| dc.date.schoolyear | 99-1 | |
| dc.description.degree | 碩士 | |
| dc.contributor.oralexamcommittee | 楊偉勛,高玲玉 | |
| dc.subject.keyword | 視網膜母細胞瘤,癌症的抑制基因,異型合子性狀消失,生殖細胞突變,體細胞突變,雙擊假說, | zh_TW |
| dc.subject.keyword | Retinoblastoma (RB),Tumor suppressor gene,Loss of heterozygosity (LoH),Germline mutation,Somatic mutation,Two-Hits Hypothesis, | en |
| dc.relation.page | 84 | |
| dc.rights.note | 有償授權 | |
| dc.date.accepted | 2011-02-14 | |
| dc.contributor.author-college | 醫學院 | zh_TW |
| dc.contributor.author-dept | 分子醫學研究所 | zh_TW |
| 顯示於系所單位: | 分子醫學研究所 | |
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