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請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/48213
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dc.contributor.advisor王錦堂
dc.contributor.authorYi-Jiun Panen
dc.contributor.author潘怡均zh_TW
dc.date.accessioned2021-06-15T06:49:06Z-
dc.date.available2016-10-07
dc.date.copyright2011-10-07
dc.date.issued2011
dc.date.submitted2011-03-29
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dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/48213-
dc.description.abstract吞噬作用是宿主對抗致病微生物的第一道防線,因此,對於防禦細菌入侵扮演重要的角色。而在細菌中同樣也有重要的致病基因負責抵禦吞噬作用,進而成功的感染人體。克雷伯氏肺炎桿菌(Klebsiella pneumoniae)引起之化膿性肝膿瘍為台灣重要之新興感染症,其致病機制目前所知和先天免疫中之血清與吞噬抗性最相關。本實驗室原來利用黏性去篩選一突變株庫,結果得到一致病基因為magA,後來證實是負責K1莢膜多醣體合成的重要基因。由於用黏性之篩檢侷限於莢膜與外壁相關的基因,為了能進一步篩選與吞噬抗性有關之基因,本研究使用黏菌(Dictyostelium discoideum)模式進行篩選。黏菌的變形蟲(amoeba)時期與哺乳類的巨噬細胞有許多相似的特徵,其一便是具有吞噬並殺死細菌的能力。本研究以此模式篩選造成肝膿瘍且對於吞噬作用具有抗性的克雷伯氏肺炎桿菌(NTUH-K2044)之突變株庫,找尋與抵抗吞噬作用相關的致病基因,約2500株突變株之中有29個突變株可產生溶菌圈。分析跳躍子嵌入之位置,共有六個基因,其中三個為負責莢膜合成之基因,另外三個分別為KP2125(肉鹼carnitine代謝相關),clpX(蛋白酶ATPase分子)以及wzm基因(脂多醣O抗原之運輸蛋白),再一次將基因剔除以及將此基因補回,並確認吞噬作用的結果發現只有有△clpX 以及△wzm 基因剔除株對黏菌吞噬失去抗性,而基因補回株也恢復其抗性。此外,由健康人周邊血液分離的噬中性白血球與菌株作用證實兩突變株的確較易被人類的噬中性白血球吞噬清除。之後藉由動物實驗發現兩突變株感染之小鼠相較於野生株感染的小鼠存活率高,顯示這兩個基因確實影響克雷伯氏肺炎桿菌的致病力。此外,同時發現與clpX屬於同一個操縱基因組(operon)的clpP 基因對於抗吞噬作用也是重要的。利用基因微陣列進一步分析△clpX 基因剔除株中基因表現情形發現其莢膜合成基因表現量相較於野生株下降了3 倍,但莢膜合成量減少並不是此突變株抵抗吞噬作用能力下降的唯一原因。因此,本研究利用黏菌模式發現對於克雷伯氏肺炎桿菌抗吞噬與致病重要的基因,也證實黏菌模式可用於具有厚層莢膜之細菌以進行與吞噬抗性相關基因的篩選。zh_TW
dc.description.abstractPhagocytosis is the first line of host defense against invading microorganisms, therefore, it plays an important role in host antibacterial response. On the other hand, some bacterial genes responsible for attacking phagocytosis may be essential for their pathogenicity. Klebsiella pneumoniae causing pyogenic liver abscess is an important emerging infectious disease in Taiwan. Resistance to innate immune response —serum killing and phagocytosis are known to be critical virulence factors in K. pneumoniae. Using transposon mutagenesis and mucoviscosity screening, we had identified a virulent gene, magA, related to phagocytic resistance. This gene was further proved to be associated with synthesis of K1 capsule. Because the limitation of screening by mucoviscosity, we use a Dictyostelium model to identify genes associated with phagocytic resistance. Since the amoeba form of Dictyostelium discoideum and mammalian macrophage share many traits such as the ability to phagocytose and kill bacteria, in this study, we used a Dictyostelium model to investigate genes for resistance to phagocytosis in NTUH-K2044, a strain of K. pneumoniae causing pyogenic liver abscess that is highly resistant to phagocytosis. A total of 2500 transposon mutants were screened by plaque assay, and 29 of them permitted phagocytosis by Dictyostelium. In the 29 mutants, 6 loci were identified; three were capsular synthesis genes. Among the other three, one was related to carnitine metabolism (KP2125), one encoded a subunit of protease (clpX), and the other encoded a lipopolysaccharide O-antigen transporter (wzm). Deletion and complementation of these genes showed that only △clpX and △wzm mutants became susceptible to Dictyostelium phagocytosis, and their complementation restored the phagocytosis resistance phenotype. These two mutants were also susceptible to phagocytosis by human neutrophils and revealed attenuated virulence in a mouse model, implying that they play important roles in the pathogenesis of K. pneumoniae. Furthermore, we demonstrated that clpP, which exists in an operon with clpX, was also involved in resistance to phagocytosis. The transcriptional profile of △clpX was examined by microarray and revealed a 3-fold lower level of expression of capsular synthesis genes. However, decrease of capsule synthesis was not the only reason for impaired phagocytosis resistance. Therefore, we have identified genes involved in resistance to phagocytosis and virulence in K. pneumoniae using Dictyostelium, and this model is useful to explore genes associated with resistance to phagocytosis in heavily-encapsulated bacteria.en
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dc.description.tableofcontents口試委員會審定書 i
誌謝 ii
中文摘要iii
英文摘要iv
第一章 緒論 1
1.1黏菌模式應用於細菌致病研究之背景 1
1.2克雷伯氏肺炎桿菌研究背景及本研究之目的 3
第二章 材料與方法 4
2.1菌株與載體 4
2.2克雷伯氏肺炎桿菌突變株庫 4
2.3利用黏菌篩選較易被吞噬之克雷伯氏肺炎桿菌突變株 5
2.4 突變株序列分析 5
2.5基因剔除菌株的建構 7
2.6 基因補回細菌基因體上 8
2.7 電穿孔方法 8
2.8黏菌吞噬作用試驗 9
2.9人類噬中性白血球吞噬作用試驗 9
2.10共軛焦螢光顯微鏡觀察 10
2.11人類嗜中性白血球毒殺細菌試驗 11
2.12血清抗性試驗 11
2.13克雷伯氏肺炎桿菌基因微陣列 11
2.14 萃取克雷伯氏肺炎桿菌菌株的全基因表現體 12
2.15 基因微陣列探針的合成 13
2.16基因微陣列的雜交 13
2.17基因微陣列呈色反應及影像分析 14
2.18 反轉錄定量聚合酶連鎖反應 15
2.19 高黏性型態測試 15
2.20 免疫轉漬法(Immunoblot) 16
2.21 以銀染實驗觀察脂多醣的O抗原 17
2.22以反轉錄聚合酶連鎖反應分析轉錄單位 18
2.23二維電泳 19
2.24動物實驗 21
第三章 結果 22
3.1利用黏菌模式篩選可能與抗吞噬作用相關之基因 22
3.2共軛焦螢光顯微鏡下觀察黏菌與突變株作用後細菌被吞噬的情形...23
3.3共軛焦螢光顯微鏡下觀察人類噬中性白血球與突變株作用後的情形.. 23
3.4 人類嗜中性白血球毒殺細菌結果 24
3.5銀染結果 24
3.6 clpX上下游基因組成與轉錄單位的分析 24
3.7 clpP對於克雷伯氏肺炎桿菌抗吞噬作用的角色 24
3.8利用基因微陣列探討ΔclpX 對整體基因表現的影響 25
3.9莢膜生成量之分析 25
3.10 利用免疫轉漬法偵測突變株莢膜的表現 26
3.11 Δwzm 、ΔclpX突變株與ΔPrmpA突變株表現型之比較 26
3.12 以二維電泳分析ΔclpX突變株與野生株之蛋白體表現差異 26
3.13 血清抗性測試 27
3.14動物實驗結果 27
第四章 總結與討論 28
4.1 本研究使用之突變株庫的代表性 28
4.2 利用黏菌模式篩選之結果 28
4.3 與過去研究結果之比較 28
4.4 脂多醣O抗原的角色 29
4.5 Clp 蛋白酶的角色 29
4.6 clpX基因與莢膜合成的關係 31
4.7 ClpPX蛋白酶影響吞噬作用的可能原因及在克雷伯氏肺炎桿菌致病之角色……………………31
參考文獻 61
附錄 70
圖A、利用黏菌篩選克雷伯氏肺炎桿菌突變株之簡圖 70
圖B、半隨機聚合酶連鎖反應示意圖 71
圖C、無標記突變株篩選示意圖 72
圖D、將基因補回細菌基因體上 73

表目錄
表一、 研究中使用的細菌菌株及載體 ……………………………………… 33
表二、研究中使用的載體 ………………………………………………………. 34
表三、 研究中使用的引子………………………. 35
表四、 可被黏菌吞噬清除的突變株 ………………………………………… 36
表五、在ΔclpX 突變株中RNA表現量下降的微陣列點…… 37
表六、在ΔclpX 突變株中表現量有差異的蛋白質…………43

圖目錄
圖一、利用黏菌篩選較易被吞噬之克雷伯氏肺炎桿菌突變株… 44
圖二、以黏菌確認基因剔除株以及基因補回株對吞噬作用的抗性..45
圖三a、共軛焦顯微鏡下黏菌對不同突變株之吞噬情形………… 46
圖三b、計數被黏菌吞噬的細菌數…………………………………47
圖四、共軛焦螢光顯微鏡下觀察人類噬中性白血球與突變株作用後的情形…. 48
圖五a、共軛焦顯微鏡下人類的噬中性白血球對不同突變株之吞噬情形…….49
圖五b、計數被噬中性白血球吞噬的細菌數………………….. 50
圖六、人類嗜中性白血球毒殺細菌實驗…………………………51
圖七、Δwzm突變株以及其補回株之銀染結果 …………………52
圖八、clpX上下游基因組成與轉錄單位的分析…………….. 53
圖九、以反轉錄定量聚合酶連鎖反應分析莢膜基因的表現量…54
圖十、以低速離心的方式觀察莢膜生成量……............ 55
圖十一、利用免疫轉漬法偵測莢膜的表現………....... 56
圖十二、以二維電泳分析ΔclpX突變株與野生株之蛋白體表現差異57
圖十三、突變株與野生株感染小鼠後小鼠的存活情形…………58
圖十四a、突變株與野生株感染小鼠後於小鼠肝臟組織的菌量…59
圖十四b、突變株與野生株感染小鼠後於小鼠脾臟組織的菌量 60
dc.language.isozh-TW
dc.subject化膿性肝膿瘍zh_TW
dc.subject吞噬作用zh_TW
dc.subject黏菌zh_TW
dc.subject巨噬細胞zh_TW
dc.subject克雷伯氏肺炎桿菌zh_TW
dc.subjectDictyosteliumen
dc.subjectpyogenic liver abscessen
dc.subjectKlebsiella pneumoniaeen
dc.subjectmacrophageen
dc.subjectphagocytosisen
dc.title利用黏菌模式發現克雷伯氏肺炎桿菌抗吞噬作用相關的致病基因zh_TW
dc.titleIsolation of genetic loci associated with phagocytosis and virulence in Klebsiella pneumoniae using a Dictyostelium modelen
dc.typeThesis
dc.date.schoolyear99-2
dc.description.degree博士
dc.contributor.oralexamcommittee彭慧玲,鄧述諄,楊宏志,邱政洵,董馨蓮,林稚容
dc.subject.keyword吞噬作用,黏菌,巨噬細胞,克雷伯氏肺炎桿菌,化膿性肝膿瘍,zh_TW
dc.subject.keywordphagocytosis,Dictyostelium,macrophage,Klebsiella pneumoniae,pyogenic liver abscess,en
dc.relation.page73
dc.rights.note有償授權
dc.date.accepted2011-03-29
dc.contributor.author-college醫學院zh_TW
dc.contributor.author-dept微生物學研究所zh_TW
顯示於系所單位:微生物學科所

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