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請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/47014
完整後設資料紀錄
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dc.contributor.advisor莊榮輝
dc.contributor.authorNai-Yin Huangen
dc.contributor.author黃迺茵zh_TW
dc.date.accessioned2021-06-15T05:45:17Z-
dc.date.available2020-08-17
dc.date.copyright2010-08-20
dc.date.issued2010
dc.date.submitted2010-08-19
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dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/47014-
dc.description.abstract金屬螯合素合成酶 (phytochelatin synthase, PCS) 之活性調控方式,可能經由轉譯後之修飾 (post-translational modification) 而非轉錄層次。以蛋白質磷酸化預測軟體分析阿拉伯芥PCS1序列,發現Thr49附近有很強烈的CK2磷酸化訊號。進一步以藍綠藻NsPCS立體構造為模版,建立AtPCS1的N端區域三級結構,發現Thr49在立體結構上非常靠近Arg183,因此推論Thr49可能藉由磷酸化與Arg183的正電基團產生離子鍵作用力,造成構型改變進而提升PCS的催化活性。由蛋白質定位點突變實驗,已證實PCS的活性確實以磷酸化及去磷酸化調控。本論文針對PCS和三種Thr49點突變株T49A、T49D、T49E進行酵素動力學分析,結果發現T49A的Kcat明顯下降為wild-type (WT) 的23%,T49D和T49E也分別只有WT的7.6% 和10.2%;另外,T49A的Km值是WT的69%,而T49D和T49E分別為WT的5.8倍和1.9倍。由此可知,當Thr49置換成酸性胺基酸後,對於PCS的基質結合力和催化效率都與動機之推測相反。PCS可能以可逆的磷酸化調控來改變酵素的構形,Thr49上的磷酸化能穩定活性區的立體結構,進而提升PCS的催化效率。此外,由於植物內的PCS表現量很少,為了純化出大量的內生性PCS,我們將AtPCS1在阿拉伯芥中過量表現,經由抗生素篩選、PCR、半定量RT-PCR及IPCR等分子檢測,得到穩定表現AtPCS1之T3代轉殖株,期望藉由提高植物內PCS蛋白質表現量,純化得內生性的PCS,以進而深入研究PCS之磷酸化在植株內的生理角色。zh_TW
dc.description.abstractAtPCS1 is constitutively expressed in the Arabidopsis. Its mRNA level is not enhanced by the pretreatment of plant with heavy metals. This implies that AtPCS1 could be controlled by post-translational modification; and protein phosphorylation is one of the essential modification mechanisms in the cell. From the amino acid sequence of AtPCS1, Thr49 was predicted to be a potential phosphorylation site. The three-dimensional structure of NsPCS was used as the template for the computer modeling of the N-terminal domain of PCS from Arabidopsis. It was found that the side chain of Arg183 was very close to the phosphate group of the phospho-Thr49, and interaction between this phosphorylated group and the Arg183 may form a functional conformation for the catalytic site of PCS. Pre-vious studies have shown that phosphorylation status may affect PCS activity. In this study, several site-directed mutants on Thr49 were performed including AtPCS1(T49A), AtPCS1(T49D) and AtPCS1(T49E). After expression of the mutant proteins, we examined the kinetic parameters of PCS mutants. The Kcat of mutant proteins T49A, T49D and T49E decreased to 23%, 7.6% and 10.2% of the wild type protein, respectively. On the other hand, the Km of T49A decreased to 69%, but T49D and T49E had 5.8-fold and 1.9-fold increase in Km. Apparently, when Thr49 was replaced by acidic amino acid, the substrate affinity and catalytic efficiency of PCS was inhibited. It was postulated that PCS activity might be controlled by reversible phosphorylation, and the conformation of the enzyme can be changed by the introduction of this phosphate group. This conformation change might facilitate the entrance of the substrate into the catalytic sites. In addition, to purify the endogenous PCS from the plant, we tried to overexpress AtPCS1 in Arabidopsis. After antibiotic selection and the molecular identification of AtPCS1 by PCR, semi-quantitative RT-PCR and IPCR, we might obtain the transgenic Arabidopsis producing larger amount of PCS for further studies of the protein phosphorylation of the endogenous PCS.en
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dc.description.tableofcontents中文摘要I
Abstract. II
縮寫表I
第一章 緒論1
1.1 重金屬汙染 1
1.1.1 重金屬的定義 1
1.1.2 重金屬對生物體造成之傷害 1
1.1.3 鎘對人體及植物造成的傷害 2
1.2 生物的重金屬解毒機制和忍受機制 2
1.2.1金屬硫蛋白 (metalothionein) 3
1.2.2植物螯合素 3
1.2.3細胞對重金屬的其他解毒機制 5
1.3 植物螯合素合成酶 (Phytochelatin synthase) 6
1.3.1植物螯合素合成酶之基因序列 6
1.3.2植物螯合素合成酶之蛋白質功能區域 9
1.3.3植物螯合素合成酶之催化機制 10
1.3.4植物螯合素合成酶具有bifunctionality 12
1.4 過量表現植物螯合素合成酶 13
1.4.1過量表現PCS增加植株之重金屬耐受性 13
1.4.2過量表現AtPCS1之阿拉伯芥產生鎘敏感現象 14
1.4.3不同物種PCS之功能性差異 14
1.5植物螯合素合成酶酵素活性調控機制 15
1.5.1 PCS的活性可被蛋白質磷酸化調控 16
1.5.2 植物對於重金屬逆境下的訊息傳遞途徑 16
1.6 實驗動機 17
第二章 材料與方法 19
2.1轉殖阿拉伯芥植株 19
2.1.1 Sticky-end PCR擴增阿拉伯芥AtPCS1 19
2.1.2 構築pCAMBIA1302-AtPCS1質體 19
2.1.3 大腸桿菌DH5
2.1.4 微量抽取pCAMBIA1302-AtPCS1質體DNA 20
2.1.5 阿拉伯芥之種植 20
2.1.6 農桿菌 (Agrobacterium tumefaciens) GV3101菌株電穿孔轉型 21
2.1.7 阿拉伯芥之基因轉殖 21
2.1.8轉殖種子之抗生素篩選 22
2.2 阿拉伯芥植株之分子檢定 22
2.2.1轉殖株之基因體DNA簡易抽取及PCR檢定 22
2.2.2 阿拉伯芥轉殖株中T-DNA嵌入數目之確認 23
2.2.3 阿拉伯芥轉殖株及突變株之AtPCS1表現量分析 23
2.2.4 T-DNA突變株同型結合子之確認 24
2.3 植物螯合素合成酶之酵素動力學 24
2.3.1 AtPCS1定點突變 (Site-directed mutagenesis) 24
2.3.2大腸桿菌BL21 熱衝擊轉型作用 24
2.3.3 AtPCS1重組蛋白之表現及純化 25
2.3.4 AtPCS1重組蛋白之活性分析 25
2.4 蛋白質磷酸化對AtPCS1重組蛋白活性之影響 26
2.5 cad1-3互補性試驗 (cad1-3 complementation) 載體之構築 27
2.5.1 pGEM-T-P1質體之構築 27
2.5.2 pCAMBIA2300-P1質體之構築 27
2.5.3 pCAMBIA2300-P1-AtPCS1質體之構築 27
第三章 結果與討論 29
3.1 AtPCS1 基因及啟動子之次選殖 29
3.2 阿拉伯芥轉殖載體之構築 29
3.2.1過量表現PCS載體之構築 29
3.2.2 PCS互補性試驗載體之構築 30
3.3 阿拉伯芥轉殖植株之篩選及分子檢測 32
3.3.1 抗生素篩選及T-DNA拷貝數計算 32
3.3.2以PCR確認目標基因插入植染色體DNA 33
3.3.3 以半定量PCR檢測PCS轉殖株的mRNA表現量 33
3.3.3.1 偵測SALK_149917是否為PCS knock out突變株 33
3.3.3.2 偵測PCS過量表現株之mRNA表現量 34
3.3.4 以inverse PCR確認阿拉伯芥轉殖株中T-DNA嵌入數目 34
3.3.5 以PCR確認T-DNA突變株之基因型 (Genotype) 35
3.3.6 結論 35
3.4 觀察T-DNA突變株及PCS過量表現轉殖株在鎘處理下的性狀 46
3.5 以CK2磷酸化及CIAP去磷酸化對 PCS重組蛋白活性之影響 50
3.5.1 PCS經CIAP處理後之活性變化 50
3.5.2 PCS經CK2處理後之活性變化 50
3.5.3 結論 50
3.6 Thr49點突變型PCS之活性分析及酵素動力學 54
3.6.1 突變型PCS之活性分析 54
3.6.2 PCS Thr49點突變株之酵素動力學 54
3.6.3 結論 55
3.7 未來展望 61
參考文獻62
附錄. 68
附錄一. pCAMBIA1302載體之限制酶圖暨 MCS 序列 68
附錄二. pCAMBIA2300載體之限制酶圖暨 MCS 序列 69
附錄三. Sticky-end PCR 原理 70
附錄四. IPCR原理 71
附錄五. 蛋白質定量法 72
附錄六. SDS膠體電泳檢定法 73
附錄七. 蛋白質電泳轉印及染色法 76
附錄八. CBR蛋白質膠體染色法 78
附錄九. 酵素免疫膠體染色法 79
附錄十. 高效液相層析法 (HPLC) 81
附錄十一. 阿拉伯芥染色體DNA之抽取 83
附錄十二. Total RNA之抽取 (Pine Tree Method) 84
附錄十三. Total RNA之抽取 (Single-step RNA isolation method) 86
附錄十四. RNA濃度估算及電泳分析 87
附錄十五. RT-PCR (reverse transcriptase-polymerase chain reaction) 89
附錄十六. 阿拉伯芥T-DNA突變株鑑定與分析 90
附錄十七. 藍白篩選91
附錄十八. 非平整端點聚合酶連鎖反應 (Sticky-end PCR) 92
附錄十九. 重組蛋白質之誘導與表現 93
附錄二十. 重組蛋白質之純化94
附錄二十一. 農桿菌電穿孔轉型96
附錄二十二.半定量反轉錄聚合酶連鎖反應 (Semi-quantitative RT-PCR) 98
附錄二十三. 反向聚合酶連鎖反應 (Inverse polymerase chain reaction, IPCR) 99
附錄二十四. 阿拉伯芥蛋白質粗抽101
問答錄102
dc.language.isozh-TW
dc.subject蛋白質磷酸化zh_TW
dc.subject金屬螯合素合成&#37238zh_TW
dc.subjectprotein phosporylationen
dc.subjectphytochelatin synthaseen
dc.title阿拉伯芥金屬螯合素合成酶轉殖株之分子鑑定及Thr49突變株之活性分析zh_TW
dc.titleMolecular Characterization in AtPCS1 Transgenic Arabidopsis and Activity Analysis of Thr49 Mutants of AtPCS1en
dc.typeThesis
dc.date.schoolyear98-2
dc.description.degree碩士
dc.contributor.oralexamcommittee陳翰民,常怡庸,鄭貽生,張世宗
dc.subject.keyword金屬螯合素合成&#37238,蛋白質磷酸化,zh_TW
dc.subject.keywordphytochelatin synthase,protein phosporylation,en
dc.relation.page103
dc.rights.note有償授權
dc.date.accepted2010-08-19
dc.contributor.author-college生命科學院zh_TW
dc.contributor.author-dept微生物與生化學研究所zh_TW
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