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請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/22751
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor楊建志
dc.contributor.authorAi-Ling Kaoen
dc.contributor.author高艾玲zh_TW
dc.date.accessioned2021-06-08T04:26:52Z-
dc.date.copyright2010-02-24
dc.date.issued2010
dc.date.submitted2010-02-10
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dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/22751-
dc.description.abstract阿拉伯芥中發現四個與豬的MAPR (membrane associated progesterone receptor conponent 1) 有30~40% 相似度的同源性蛋白質,AtMAPR2、AtMAPR3、AtMAPR4與AtMAPR5。研究指出AtMAPR5 (putative membrane steroid binding protein, MSBP1) 位在細胞膜,藉由促進brassinosteroid (BR) 受體走向內噬作用途徑,負向調控其訊息傳導 (Song et al. 2009)。但對於其他AtMAPRs蛋白質的功能仍然缺乏了解。於大腸桿菌中表現AtMAPRs,並分析其蛋白質特性。AtMAPRs之UV-visible光譜顯示AtMAPRs具有血基質蛋白的特性,綜合過去研究,血基質結合能力似乎是MAPRs蛋白質家族的特徵之一。進一步利用EPR光譜研究AtMAPR2與血基質結合模式,結果顯示AtMAPR2與血基質為高自旋度五配位共價結合形式,並利用定位點突變方式找到兩個影響AtMAPR血基質親和力的重要殘基Tyr44與Tyr92。
之前研究發現AtMAPR3與AtMAPR5在胞外具有E3-independent自身泛素化修飾能力,在本論文中,證實AtMAPR2及AtMAPR4在E3不存在的情況下,也可以進行自身泛素化修飾,且其修飾方式為接上一個泛素。序列比對結果顯示AtMAPRs上具有類似UIM (ubiquitini-interacting motif,為泛素結合區塊UBD的一種) 的序列,其位於血基質結合區塊上。血基質的添加會降低AtMAPR2的自身泛素化修飾反應,血基質結合與泛素化修飾作用有競爭的現象,可能由於這兩種修飾作用都發生在AtMAPR2疏水性口袋結構上。即時定量聚合酶鏈鎖反應顯示AtMAPR2的基因表現會受brassinosteroid的刺激而下降,且AtMAPR2基因表現下降的RNAi植株對brassinosteroid的刺激較不敏感,以上結果顯示AtMAPR2具有血基質結合能力且可能參與brassinosteroid訊息傳導或生合成途徑。
以酵母菌雙雜合法找到AtMAPR3的交互作用蛋白AGT1 (alanine glyoxylate transaminase),AGT1為參與光呼吸作用的重要酵素,本研究藉由GST pull-down與BiFC (bimolecular fluorescence complementation) 分析驗證兩者交互作用的真實性及專一性,且發現血基質結合區塊對其交互作用的發生扮演重要的角色。在AtMAPR3::GUS突變株GUS活性分析中顯示,AtMAPR3的基因表現會受到光照的誘導。不論在洋蔥表皮或阿拉伯芥原生質體的細胞內定位實驗指出,AtMAPR3會位在細胞膜上與囊狀構造 (vesicles) 中。AtMAPR3基因靜默突變株對過氧化氫的處理較為敏感,且在鹽逆境下種子發芽率較野生型高,AtMAPR3基因表現會受到與植物防禦機制相關的植物荷爾蒙 (茉莉酸與水楊酸) 及鹽逆境刺激而增加。綜合以上結果,AtMAPR3可能藉由與AGT1的交互作用而參與光呼吸作用的調控機制。
AtMAPR4基因靜默突變株與基因表現下降之突變株,在強光培養下呈現淡綠色葉子與開花時間較晚之性狀改變,以酵母菌雙雜合法篩選到AtMAPR4的交互作用蛋白質,為屬於位在ER膜上的轉錄因子NTL11與細胞核孔蛋白WIP1,並進一步以BiFC驗證其交互作用之專一性。NTL11基因表現會受到高溫強光而誘導,調控flavonoids生合成基因的表現,促進花青素合成因應強光傷害。WIP1可調控RanGAP1結合上細胞核膜的過程,調控物質進出細胞核,再者AtMAPR4細胞內定位位在細胞核膜與細胞膜等膜系構造上。推測AtMAPR4在細胞內可能藉由泛素化修飾作用,在強光或高溫的情況下,參與NTL11由ER釋放至細胞核的過程,進一步調控flavinoids生合成基因表現。
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dc.description.abstractFour AtMAPRs (AtMAPR2, AtMAPR3, AtMPAR4, and AtMAPR5) in Arabidopsis sharing 30-40% similarity with porcine MAPR (membrane associated progesterone receptor component 1) have been identified and investigated. AtMAPR5 (putative membrane steroid binding protein, MSBP1) is a membrane protein and proposed to negatively regulate brassinosteroid signaling by enhancing the endocytosis (Song et al. 2009). However, the functions of other AtMAPRs are still unclear. In this study, the recombinant AtMAPRs were purified from E.coli and their molecular properties were investigated. The UV-visible absorption spectra showed that AtMAPRs were hemoproteins. The heme binding affinity seems to be a common feature of MAPR family proteins in vitro. The EPR spectra of the purified proteins showed that AtMAPR2 bound a heme chromophore in high-spin, five-coordinated type. Site-directed mutagenesis indicated that two Tyr residues, Y44 and Y92, were important for anchoring heme into a hydrophobic pocket.
Previous study on AtMAPR3 and AtMAPR5 showed they had E3-independent autoubiquitination ability in vitro. In this study, AtMAPR2 and truncated AtMAPR4 also possessed monoubiquitination ability without E3 ligase in vitro. The putative UIM (ubiquitin-interacting motif, a member of UBDs) was located in conserved heme/steroid binding domain of AtMAPRs. The autoubiquitination ability of AtMAPR2 seems to be decreased by adding heme in vitro. Heme binding might compete with the ubiquitin modification owing to their binding to the same hydrophobic pocket in AtMAPRs.
The expression of AtMAPR2 was down-regulated by brassinosteroid as revealed by the real-time PCR analysis and the knockdown mutant of AtMAPR2 showed less sensitivity to brassinosteroid. These results indicated that AtMAPR2 had heme binding affinity in vitro and might be involved in brassinosteroid signaling or synthesis pathway.
By GST pull-down and bimolecular fluorescence complementation (BiFC) assay, AtMAPR3 showed protein-protein interaction with alanine glyoxylate transaminase (AGT1) which participated in the plant photorespiration. The heme/steroid binding domain of AtMAPR3 played an important role in the interaction between AtMAPR3 and AGT1. In AtMAPR3::GUS plants, the GUS activity was up-regulated by light. AtMAPR3-GFP was located in plasma membrane and vesicles in onion epidermal cells or Arabidopsis protoplasts. The AtMAPR3 knockout mutant was more sensitive to H2O2 in 16-day-old seedlings and more resistant to salt stress by seed germination bioassay. The gene expression of AtMAPR3 was increased by treatments with defense-related hormones, jasmonate and salicylic acid, and NaCl. These results revealed that AtMAPR3 might be involved in the regulation on photorespiration by interacting with AGT1.
The knockout and knockdown mutants of AtMAPR4 showed pale green leaves under strong light intensity and longer flowering time. Two interacting protein candidates of AtMAPR4, NTL11 (NTM1-like protein) and WIP1 (WPP-domain interacting protein), were found using yeast two hybrid experiments. The specific interaction between AtMAPR4 and NTL11 was confirmed by BiFC assay. NTL11 is involved in flavonoids biosynthesis. These results showed that AtMAPR4 might regulate flavonoids synthesis by interacting with NTL11.
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dc.description.tableofcontents目錄 I
縮寫表 VIII
摘要 XI
Abstract XIII
第一章 緒論 1
1.1類固醇類荷爾蒙之重要性及作用模式 1
1.1.1類固醇類荷爾蒙的作用模式 2
1.1.2基因體調控模式 (Genomic action) 及非基因體調控模式 (Non- genomic action) 2
1.2黃體激素及其作用模式 3
1.3黃體激素受體及訊息傳導模式 5
1.3.1 Nuclear Progesterone Receptor -- PR-A及PR-B 5
1.3.2 Membrane Progestin Receptor --mPRα、mPRβ及mPRγ 5
1.3.3 Membrane Associated Progesterone Receptor component 1 – MAPR (PGRMC1) 6
1.4 MAPR 家族 8
1.4.1 Cytochrome b5 like Heme/Steroid binding domain 8
1.4.2 MAPR家族成員 8
1.4.3 MAPR家族可能的受質 (Ligands) 10
1.4.3.1黃體激素/固醇類 10
1.4.3.2血基質 (heme) 11
1.5模式植物:阿拉伯芥 (Arabidopsis thaliana) 13
1.6 AtMAPRs家族蛋白質 15
1.6.1 AtMAPR2之NMR結構 17
1.6.2 AtMAPR5/MSBP1之功能 20
1.7研究方向及重點 21
第二章 材料與方法 22
2.1實驗材料 22
2.1.1植物材料 22
2.1.2載體 (vectors) 22
2.1.3菌種 24
2.2實驗藥品 24
2.2.1一般化學藥劑 24
2.2.2酵素 (限制酶及核酸修飾酶) 25
2.2.3培養基 25
2.3儀器設備 26
2.4實驗方法 27
2.4.1阿拉伯芥種植 27
2.4.1.1培養基之配製 27
2.4.1.2種子之表面消毒及低溫處理 29
2.4.1.3種子之無菌培養 29
2.4.1.4種子之土壤培養 29
2.4.1.5種子之收集 29
2.4.2 DNA之抽取與分析 30
2.4.2.1阿拉伯芥染色體DNA之抽取 (CTAB method) 30
2.4.2.2質體DNA之抽取 30
2.4.2.3 DNA限制酶切割之分析 32
2.4.2.4 DNA瓊脂糖膠體電泳 32
2.4.2.5 DNA片段之分離與純化 32
2.4.2.6 DNA之去磷酸化反應 33
2.4.2.7 DNA之磷酸化反應 33
2.4.2.8 DNA之定量 33
2.4.3 RNA之抽取與分析 33
2.4.3.1 Total RNA之抽取 (TRIzol reagent method) 33
2.4.3.2 Total RNA之抽取 (Pine tree method) 34
2.4.3.3 RNA濃度估算 34
2.4.3.4 DNase treatment 35
2.4.3.5 RT-PCR 36
2.4.4 AtMAPRs表現載體之建構 37
2.4.4.1表現重組蛋白質實驗之載體建構 37
2.4.4.2細胞、組織定位、BiFC及基因轉殖實驗之載體建構 40
2.4.4.3 AtMAPRs啟動子驅動GUS表現之載體建構 44
2.4.5重組蛋白質表現與檢定 44
2.4.5.1重組蛋白質表現條件之探討 44
2.4.5.2重組蛋白質之純化與分析 45
2.4.5.3蛋白質電泳檢定 46
2.4.6重組蛋白質血基質特性測定 50
2.4.6.1蛋白質UV-visible光譜測定 50
2.4.6.2 ICP-OES測定 50
2.4.6.3 EPR光譜測定 51
2.4.6.4 CD光譜測定 51
2.4.6.5血基質染色 51
2.4.7胞外泛素化修飾分析實驗 52
2.4.7.1胞外泛素化修飾反應 (in vitro ubiquitination assay) 52
2.4.7.2梯度電泳 (gradient SDS-PAGE) 52
2.4.8 AtMAPRs之T-DNA突變株鑑定與分析 53
2.4.8.1 T-DNA突變株同型結合子 (homozygote) 之確定 53
2.4.8.2單一T-DNA插入突變株 (single T-DNA insertional mutant) 之確定 54
2.4.8.3突變株中AtMAPRs基因表現之確認 56
2.4.9 AtMAPRs啟動子驅動GUS表現轉殖株之建立與GUS活性 分析……………………………………………………………..….58
2.4.9.1 AtMAPRs啟動子驅動GUS表現轉殖株之建立 58
2.4.9.2 GUS活性分析 59
2.4.10阿拉伯芥外表型 (phenotype) 之觀察 59
2.4.11 AtMAPRs於不同生長時期、不同器官與處理下的基因表現 60
2.4.11.1定量性即時聚合酶鏈鎖反應 (quantitative real-time PCR) 60
2.4.11.2阿拉伯芥不同生長時期、不同器官與處理之樣品收集 64
2.4.11.3各處理樣品之定量性即時聚合酶鏈鎖反應 64
2.4.12基因槍 (Particle bombardment) 轉殖及螢光顯微鏡觀察 65
2.4.12.1基因槍轉殖原理簡介 66
2.4.12.2植物材料之準備 68
2.4.12.3 DNA包裹鎢粒子之製備 68
2.4.12.4基因槍操作 68
2.4.12.5螢光顯微鏡觀察 69
2.4.12.6共軛焦螢光顯微鏡觀察 69
2.4.13阿拉伯芥原生質體轉殖及螢光顯微鏡觀察 70
2.4.13.1阿拉伯芥原生質體之製備 70
2.4.13.2 PEG轉形法 70
2.4.14 Glutathione S-transferase (GST) pull-down assay 71
2.4.14.1目標蛋白質GST-AtMAPR2及GST-AtMAPR5表現載體建構 71
2.4.14.2候選蛋白質AGT1-His6之表現載體建構 71
2.4.14.3目標與候選蛋白質之表現條件探討 71
2.4.14.4目標與候選蛋白質之pull down assay 72
2.4.15 AGT活性分析 73
2.4.15.1 GST-AtMAPR3與AGT1-His蛋白質之純化 73
2.4.15.2 AGT1-His之AGT活性分析 73
2.4.16 AtMAPR4單株抗體製備 74
2.4.16.1 AtMAPR4抗原製備 75
2.4.16.2小鼠尾巴採血 75
2.4.16.3抗原乳劑製備法 75
2.4.16.4小鼠免疫注射法 76
2.4.16.5細胞融合 76
2.4.16.6細胞保存法 78
2.4.16.7單株抗體生產 79
2.4.16.8免疫球蛋白之純化 80
2.4.16.9酵素免疫分析法 80
第三章 結果與討論 82
3.1 AtMAPRs具有結合血基質 (heme) 的特性 82
3.1.1 AtMAPRs重組蛋白質之UV-visible吸收光譜 82
3.1.2以ICP-OES檢測AtMAPRs重組蛋白質之heme含量及Soret band的消光係數 83
3.2 AtMAPR2與血基質結合模式探討 84
3.2.1 AtMAPR2電子順磁共振光譜 (Electron paramagnetic resonance spectra) 85
3.2.2以定位點突變方式探討AtMAPR2與heme結合的模式 85
3.2.2.1突變蛋白血基質結合能力測定 86
3.2.2.2突變蛋白之CD光譜測定 87
3.2.2.3雙突變蛋白血基質結合能力測定 87
3.2.2.4 AtMAPR2的原態蛋白及突變蛋白血基質染色 88
3.2.2.5 Y38、Y44及Y92對AtMAPR2血基質結合的重要影響 90
3.2.3血基質對AtMAPR2基因表現的影響 91
3.3 AtMAPRs具有E3-independent自身泛素化修飾 (autoubiqitination) 的活性 91
3.3.1 AtMAPR2具有胞外自身泛素化修飾活性 93
3.3.2 AtMAPR4具有胞外自身泛素化修飾活性 94
3.3.3 AtMAPRs自身泛素化修飾作用之討論 94
3.3.4血基質對AtMAPR2自身泛素化修飾的影響 95
3.4 AtMAPR2生理功能探討 97
3.4.1 AtMAPR2的細胞內定位 97
3.4.2 AtMAPR2基因表現情形分析 98
3.4.2.1 AtMAPR2於不同生長時期之表現情形 98
3.4.2.2 AtMAPR2於不同器官之表現情形 99
3.4.2.3 AtMAPR2於不同荷爾蒙處理下之表現情形 100
3.4.2.4 AtMAPR2於非生物性逆境下之表現情形 100
3.4.3 AtMAPR2突變株對brassinosteroid的反應 101
3.4.4 AtMAPR2可能扮演的生理功能 102
3.5 AtMAPR3生理功能探討 103
3.5.1 AtMAPR3相關T-DNA突變株之篩選 103
3.5.1.1 AtMAPR3之基因靜默突變株 103
3.5.1.2 AtMAPR3基因靜默突變株之外表型觀察 104
3.5.2 AtMAPR3基因表現情形分析 105
3.5.2.1 AtMAPR3於不同生長時期與不同器官之表現情形 105
3.5.2.2 AtMAPR2於不同荷爾蒙處理下之表現情形 106
3.5.2.3 AtMAPR3於非生物性逆境下之表現情形 107
3.5.3可能與AtMAPR3產生交互作用之蛋白質 107
3.5.3.1丙胺酸-乙醛酸轉胺酶 (alanine-glyoxylate aminotransferase 1,AGT1) 107
3.5.3.2泛素家族蛋白質 108
3.5.3.3跨膜蛋白質 (plasma membrane intrinsic protein, PIP3) 108
3.5.4 AtMAPR3與AGT1的蛋白質交互作用 109
3.5.4.1 AtMAPR3與AGT之GST pull down assay 109
3.5.4.2 AtMAPR3與AGT之BiFC assay 110
3.5.5 AtMAPR3的細胞內定位 111
3.5.6 AtMAPR3與AGT1作用關係的探討 111
3.5.6.1 AtMAPR3與對AGT1轉胺酶活性調控的探討 112
3.5.6.2 AtMAPR3對AGT1泛素化修飾作用調控之探討 112
3.5.6.3 AtMAPR3基因表現受光的調控且可能參與光呼吸作用 113
3.5.7 AtMAPR3基因靜默突變株對H2O2處裡較為敏感 113
3.5.8 AtMAPR3基因靜默突變株對NaCl處裡較為不敏感 114
3.5.9 AtMAPR3可能扮演的生理角色 114
3.6 AtMAPR4生理功能探討 115
3.6.1 AtMAPR4相關T-DNA突變株之篩選與性狀觀察 115
3.6.1.1 AtMAPR4基因靜默突變株之篩選 115
3.6.1.2突變株中AtMAPR4之基因表現偵測 116
3.6.1.3 AtMAPR4 突變株之表現型態 117
3.6.2 AtMAPR4之細胞內定位 117
3.6.3 AtMAPR4之基因表現情形 118
3.6.3.1 AtMAPR4於不同生長時期與不同器官之表現情形 118
3.6.3.2 AtMAPRA4於不同荷爾蒙處理下之表現情形 119
3.6.3.3 AtMAPR4於非生物性逆境下之表現情形 119
3.6.4可能與AtMAPR4產生交互作用之蛋白質 119
3.6.4.1 NAC家族蛋白質 120
3.6.4.2 WIP1 (WPP-domain Interacting Protein 1) 122
3.6.4.3 PPI1 (Proton Pump Interactor 1) 122
3.6.4.4 VAP27-1 (Vesicle Associated Protein 27-1) 122
3.6.4.5葉綠素A-B結合蛋白質 (Lhcb3) 123
3.6.4.6 TCP家族轉錄因子 (PTF1) 123
3.6.5 AtMAPR4與NTL11交互作用之檢驗 123
3.6.6 AtMAPR4與WIP1交互作用之檢驗 124
3.6.7 AtMAPR4 與冷、熱、強光刺激之探討 124
3.6.7.1 AtMAPR4與冷處理之探討 125
3.6.7.2 AtMAPR4與高溫逆境之探討 126
3.6.7.3 AtMAPR4與強光逆境之探討 126
3.6.8 AtMAPR4可能扮演的生理角色 127
3.6.9 AtMAPR4單株抗體之製備 127
3.6.9.1單株抗體之製備與多源抗體之取得 127
3.6.9.2抗體效價測定 128
3.6.9.3單株抗體專一性測定 128
第四章 結論未來展望 129
4.1結論…… 129
4.2 未來展望 130
4.2.1 AtMAPR2 NMR結構分析 130
4.2.2 AtMAPR2與AtMAPR4胞內血基質結合能力及泛素化飾修能力 測定 131
4.2.3 AtMAPRs突變株外表型的探討 131
4.2.4 T-DNA突變株之建立與篩選 132
4.2.5細胞定位之再確認 132
4.2.6可能與AtMAPRs產生交互作用蛋白質之探討 132
參考文獻 134
結果圖表集 144
附錄 206
dc.language.isozh-TW
dc.subject血基質結合蛋白zh_TW
dc.subject黃酮類zh_TW
dc.subject光呼吸zh_TW
dc.subject自身泛素化修飾zh_TW
dc.subjectautoubiquitinationen
dc.subjectflavonoidsen
dc.subjectphotorespirationen
dc.subjecthemoproteinen
dc.title阿拉伯芥 AtMAPRs 之分子特性研究zh_TW
dc.titleMolecular Characterization of AtMAPRs in Arabidopsisen
dc.typeThesis
dc.date.schoolyear98-1
dc.description.degree博士
dc.contributor.oralexamcommittee蘇仲卿,莊榮輝,王愛玉,陳佩燁,俞聖法,陳炳宇
dc.subject.keyword血基質結合蛋白,自身泛素化修飾,光呼吸,黃酮類,zh_TW
dc.subject.keywordhemoprotein,autoubiquitination,photorespiration,flavonoids,en
dc.relation.page221
dc.rights.note未授權
dc.date.accepted2010-02-10
dc.contributor.author-college生命科學院zh_TW
dc.contributor.author-dept微生物與生化學研究所zh_TW
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