Skip navigation

DSpace

機構典藏 DSpace 系統致力於保存各式數位資料(如:文字、圖片、PDF)並使其易於取用。

點此認識 DSpace
DSpace logo
English
中文
  • 瀏覽論文
    • 校院系所
    • 出版年
    • 作者
    • 標題
    • 關鍵字
    • 指導教授
  • 搜尋 TDR
  • 授權 Q&A
    • 我的頁面
    • 接受 E-mail 通知
    • 編輯個人資料
  1. NTU Theses and Dissertations Repository
  2. 醫學院
  3. 分子醫學研究所
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/20419
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor簡穎秀(Yin-Hsiu Chien)
dc.contributor.authorYi-Lin Linen
dc.contributor.author林宜霖zh_TW
dc.date.accessioned2021-06-08T02:48:06Z-
dc.date.copyright2017-09-08
dc.date.issued2017
dc.date.submitted2017-08-18
dc.identifier.citationAnkala, A., da Silva, C., Gualandi, F., Ferlini, A., Bean, L.J., Collins, C., Tanner, A.K., & Hegde, M.R. (2015). 'A comprehensive genomic approach for neuromuscular diseases gives a high diagnostic yield.' Annals of Neurology 77(2): 206-214.
Atik, T., Bademci, G., Diaz-Horta, O., Blanton, S.H., & Tekin, M. (2015). 'Whole-exome sequencing and its impact in hereditary hearing loss.' Genetics Research 97: e4.
Boycott, K. M., Dyment, D.A., Sawyer, S.L., Vanstone, M.R., & Beaulieu, C.L. (2014). 'Identification of genes for childhood heritable diseases.' Annual Review of Medicine 65: 19-31.
Boycott, K. M., Vanstone, M.R., Bulman, D.E., MacKenzie, A.E. (2013). 'Rare-disease genetics in the era of next-generation sequencing: discovery to translation.' Nature Reviews Genetics 14(10): 681-691.
Craigen, W. J., et al. (2013). 'Exome sequencing of a patient with suspected mitochondrial disease reveals a likely multigenic etiology.' BMC Med Genet 14: 83.
Danielsson, K., Mun, L.J., Lordemann, A., Mao, J., & Lin, C.H. (2014). 'Next-generation sequencing applied to rare diseases genomics.' Expert Review of Molecular Diagnostics 14(4): 469-487.
Davis, M., Allcock, R., and Laing, N. (2016). 'Next generation sequencing for neuromuscular disease in a diagnostic setting - The Perth custom neuromuscular gene panel 3 year on.' Neuromuscular Disorders 26(2016):S88
de Koning, T. J., Jongbloed, J.D., Sikkema-Raddatz, B., Sinke, R.J. (2015). 'Targeted next-generation sequencing panels for monogenetic disorders in clinical diagnostics: the opportunities and challenges.' Expert Review of Molecular Diagnostics 15(1): 61-70.
Ekins, S., Litterman, N.K., Arnold, R.J., Burgess, R.W., Freundlich, J.S., Gray, S.J., Higgins, J.J., Langley, B., Willis, D.E., Notterpek, L., Pleasure, D., Sereda, M.W., & Moore, A. (2015). 'A brief review of recent Charcot-Marie-Tooth research and priorities.' F1000Research 4: 53.
Høyer, H., Braathen, G.J., Busk, Ø.L., Holla, Ø.L., Svendsen M., Hilmarsen, H.T., Strand, L., Skjelbred, C.F., and Russell, M.B. (2014). ' Genetic Diagnosis of Charcot-Marie-Tooth Disease in a Population by Next-Generation Sequencing.' BioMed Research International 2014 (2014)
Jiang, T., Tan, M.S., Tan, L., & Yu, J.T. (2014). 'Application of next-generation sequencing technologies in Neurology.' Annals of Translational Medicine 2(12): 125.
Karimzadeh, P. (2015). 'Approach to neurometabolic diseases from a pediatric neurological point of view.' Iranian Journal of Child Neurology 9(1): 1-16.
Katsanis, S.H. and Katsanis, N. (2015). 'Molecular genetic testing and the future of clinical genomics.' Nat Rev Genet 14(6):415
Lin, X., Tang, W., Ahmad, S., Lu, J., Colby, C.C., Zhu, J., & Yu, Q. (2012). 'Applications of targeted gene capture and next-generation sequencing technologies in studies of human deafness and other genetic disabilities.' Hearing Research 288(1-2): 67-76.
Mercimek-Mahmutoglu, S., Patel, J, Cordeiro, D., Hewson, S., Callen, D., Donner, E.J., Hahn, C.D., Kannu, P., Kobayashi, J., Minassian, B.A., Moharir, M., Siriwardena, K., Weiss, S.K., Weksberg, R., & Snead, O.C. (2015). 'Diagnostic yield of genetic testing in epileptic encephalopathy in childhood.' Epilepsia 56(5): 707-716.
Nakagawa, H., Wardell, C.P., Furuta, M., Taniguchi, H., & Fujimoto, A. (2015). 'Cancer whole-genome sequencing: present and future.' Oncogene 34(49): 5943-5950.
Nakagawa, H. S., T. (2013). 'Comprehensive genome sequencing of the liver cancer genome.' Cancer Letters 340(2):234-240.(2): 234-240.
Nigro, V. S., M. (2014). 'Genetic basis of limb-girdle muscular dystrophies: the 2014 update.' Acta Myologica 33(1): 1-12.
Nowakowski, R. and Thompson, J.H. (1992). 'Laboratory diagnosis of genetic disorders' Optom Clin 2(1):87
Østern, R., Fagerheim, T., Hjellnes, H., Nygård, B., Mellgren, S.I., & Nilssen, Ø. (2013). 'Diagnostic laboratory testing for Charcot Marie Tooth disease (CMT): the spectrum of gene defects in Norwegian patients with CMT and its implications for future genetic test strategies.' BMC Medical Geneticsc 14: 94.
Pegoraro, E. H., E. P. (2016). 'Limb-Girdle Muscular Dystrophy Overview.' GeneReviews(R).
Richards, S., Aziz, N., Bale, S., Bick, D., Das, S., Gastier-Foster, J., Grody, W. W., Hegde, M., Lyon, E., Spector, E., Voelkerding, K., and Rehm, H.L. (2013). 'Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Mlecular Pathology.' Genetics in Medicine 17:5: 405
Rogers, Y. H., & Venter, J. C. (2005). 'Genomics: massively parallel sequencing.' Nature Reviews Genetics 437(7057): 326-327.
Sanger, F., Nicklen, S., & Coulson, A.R. (1977). 'DNA sequencing with chain-terminating inhibitors' Proceedings of the National Academy Sciences USA 74(12): 5463-5467.
Swinney, D. C. X., S. (2014). 'The discovery of medicines for rare diseases.' Future Medicinal Chemistry 6(9): 987-1002.
Szymańska, K., Szczałuba, K., Lugowska, A., Obersztyn, E., Radkowski, M., Nowakowska, B.A., Kuśmierska, K., Tryfon, J., & Demkow, U. (2014). 'The analysis of genetic aberrations in children with inherited neurometabolic and neurodevelopmental disorders.' BioMed Research International 2014: 424796.
Tazir, M., Hamadouche, T., Nouioua, S., Mathis, S., Vallat, J.M. (2014). 'Hereditary motor and sensory neuropathies or Charcot-Marie-Tooth diseases: an update.' Journal of the Neurological Sciences 347(1-2): 14-22.
Yohe, S., Hauge, A., Bunjer, K., Kemmer, T., Bower, M., Schomaker, M., Onsongo, G., Wilson, J., Erdmann, J., Zhou, Y., Deshpande, A., Spears. M.D., Beckman, K., Silverstein, K.A., & Thyagarajan, B. (2015). 'Clinical validation of targeted next-generation sequencing for inherited disorders.' Archives of Pathology & Laboratory Medicine 139(2): 204-210.
Yu, M., Zheng, Y., Jin, S., Gang, Q., Wang, Q, Yu, P., Lv, H., Zhang, W., Yuan, Y., and Wang, Z. (2017). Mutational spectrum of Chinese LGMD patients by targeted next-generation sequencing. PLoS One. 2017; 12(4): e0175343
Zhang, W., Cui, H., Wong, L.J. ( 2014). 'Application of next generation sequencing to molecular diagnosis of inherited diseases.' Topics in Current Chemistry 336: 19-45.
dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/20419-
dc.description.abstract背景
基因分析為遺傳疾病確認診斷的工具。毛細管電泳是基因序列分析的標準方法,雖然準確,但因為人力和時間的耗費,價格無法降低。最近由於基因醫學的快速進步,許多臨床上表現相似的遺傳疾病,已知是由多個基因引起。若使用毛細管電泳來分析,其價格依基因數目倍增,變得相當龐大。次世代基因分析用晶片的觀念,可同時分析許多的基因,甚至全基因 (whole genome) 分析都做得到。
目的
本研究擬建立遺傳疾病次世代基因分析套組,設計高達408個基因,包含肢帶肌肉失養症、Charcot Marie Tooth氏症 (CMT, 進行性神經性腓骨萎縮症)、Brugada 猝死症、努南症候群及溶小體儲積症等。可應用在多種疾病,符合臨床運用的目的。
方法
我們從受檢者血液中抽取DNA,標靶序列捕獲捕捉平台設計所含之基因的外顯子,聚焦在408個目標基因,再用生物資訊技術分析這些捕捉的序列。本研究先用四群疾病(肢帶肌肉失養症、CMT、神經肌肉疾病、成骨不全症∕Ehlers-Danlos症候群)共40名病人來測試;並且同時監測各外顯子捕捉之效率。
結果
此NGS基因分析套組的平均覆蓋率為174.9x,95.7%的核苷酸讀深超過30x。在40人中,致病性變異點可在16個人身上被偵測到 (40%)。其中,又以肌肉失養症的診斷率最高,21個肌肉失養症病人可以確認出10名患者的致病基因變化(47.6%) ,其次為CMT 33% (2/6) 和OI∕EDS 33% (3/9)。
結論
次世代定序基因套組可以快速有效的偵測患者的致病基因變化,提供患者與醫療人員得知正確的診斷以供後續照顧參考。
zh_TW
dc.description.provenanceMade available in DSpace on 2021-06-08T02:48:06Z (GMT). No. of bitstreams: 1
ntu-106-P04448013-1.pdf: 1953693 bytes, checksum: 67ad3daf2afb157eff50a7300aa9ba8c (MD5)
Previous issue date: 2017
en
dc.description.tableofcontents摘要 i
ABSTRACT ii
TABLE OF CONTENT iv
LIST OF TABLE v
LIST OF FIGURE vi
CHAPTER 1. INTRODUCTION 1
CHAPTER 2. MATERIALS AND METHODS 6
CHAPTER 3. RESULTS 9
CHAPTER 4. DISCUSSION 14
CHAPTER 5. REFERENCE 17
dc.language.isoen
dc.title遺傳疾病次世代基因分析套組之建立zh_TW
dc.titleDevelopment of a next generation sequencing panel for inherited diseasesen
dc.typeThesis
dc.date.schoolyear105-2
dc.description.degree碩士
dc.contributor.oralexamcommittee李妮鍾(Ni-Chung Lee),胡務亮(Wuh-Liang Hwu),楊智超(Chih-Chao Yang)
dc.subject.keyword次世代定序,基因分析套組,肢帶肌肉失養症,Charcot Marie Tooth氏症,神經肌肉疾病,zh_TW
dc.subject.keywordNext-generation sequencing,Gene panel,Limb-girdle muscular dystrophy,Charcot-Marie Tooth,Neuromuscular disease,en
dc.relation.page35
dc.identifier.doi10.6342/NTU201704070
dc.rights.note未授權
dc.date.accepted2017-08-18
dc.contributor.author-college醫學院zh_TW
dc.contributor.author-dept分子醫學研究所zh_TW
顯示於系所單位:分子醫學研究所

文件中的檔案:
檔案 大小格式 
ntu-106-1.pdf
  未授權公開取用
1.91 MBAdobe PDF
顯示文件簡單紀錄


系統中的文件,除了特別指名其著作權條款之外,均受到著作權保護,並且保留所有的權利。

社群連結
聯絡資訊
10617臺北市大安區羅斯福路四段1號
No.1 Sec.4, Roosevelt Rd., Taipei, Taiwan, R.O.C. 106
Tel: (02)33662353
Email: ntuetds@ntu.edu.tw
意見箱
相關連結
館藏目錄
國內圖書館整合查詢 MetaCat
臺大學術典藏 NTU Scholars
臺大圖書館數位典藏館
本站聲明
© NTU Library All Rights Reserved