Skip navigation

DSpace

機構典藏 DSpace 系統致力於保存各式數位資料(如:文字、圖片、PDF)並使其易於取用。

點此認識 DSpace
DSpace logo
English
中文
  • 瀏覽論文
    • 校院系所
    • 出版年
    • 作者
    • 標題
    • 關鍵字
    • 指導教授
  • 搜尋 TDR
  • 授權 Q&A
    • 我的頁面
    • 接受 E-mail 通知
    • 編輯個人資料
  1. NTU Theses and Dissertations Repository
  2. 醫學院
  3. 微生物學科所
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/18694
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor王萬波(Won-Bo Wang)
dc.contributor.authorZih-Hsuan Huangen
dc.contributor.author黃子軒zh_TW
dc.date.accessioned2021-06-08T01:19:53Z-
dc.date.copyright2014-10-09
dc.date.issued2014
dc.date.submitted2014-08-08
dc.identifier.citation1 . Aad, G., B. Abbott, et al. (2011). 'Measurement of Dijet Azimuthal Decorrelations in pp Collisions at sqrt[s]=7 TeV.' Physical review letters 106: 172002.
2 . Bajenova, O., E. Stolper, et al. (2003). 'Surface expression of heterogeneous nuclear RNA binding protein M4 on Kupper cell relates to its function as a carcinoembryonic antigen receptor.' Experimental cell research 291: 228-441.
3 . Bajenova, O. V., R. Zimmer, et al. (2001). 'Heterogeneous RNA-binding protein M4 is a receptor for carcinoembryonic antigen in Kupffer cells.' The Journal of biological chemistry 276: 31067-31073.
4 . Biswas, S. K. and D. P. Nayak (1994). 'Mutational analysis of the conserved motifs of influenza A virus polymerase basic protein 1.' Journal of Virology 68: 1819-1826.
5 . Crepin, T., A. Dias, et al. (2010). 'Mutational and metal binding analysis of the endonuclease domain of the influenza virus polymerase PA subunit.' Journal of Virology 84: 9096-9104.
6 . Das, K., J. M. Aramini, et al. (2010). 'Structures of influenza A proteins and insights into antiviral drug targets.' Nature structural & molecular biology 17: 530-538.
7 . Datar, K. V., G. Dreyfuss, et al. (1993). 'The human hnRNP M proteins: identification of a methionine/arginine-rich repeat motif in ribonucleoproteins.' Nucleic acids research 21: 439-446.
8 . Deng, T., J. Sharps, et al. (2005). 'In vitro assembly of PB2 with a PB1-PA dimer supports a new model of assembly of influenza A virus polymerase subunits into a functional trimeric complex.' Journal of Virology 79: 8669-8674.
9 . Dias, A., D. Bouvier, et al. (2009). 'The cap-snatching endonuclease of influenza virus polymerase resides in the PA subunit.' Nature 458: 914-918.
10 . Fechter, P., L. Mingay, et al. (2003). 'Two aromatic residues in the PB2 subunit of influenza A RNA polymerase are crucial for cap binding.' The Journal of biological chemistry 278: 20381-20388.
11 . Fodor, E., M. Crow, et al. (2002). 'A single amino acid mutation in the PA subunit of the influenza virus RNA polymerase inhibits endonucleolytic cleavage of capped RNAs.' Journal of Virology 76: 8989-9001.
12 . Fodor, E., and M. Smith. (2004). 'The PA subunit is required for efficient nuclear accumulation of the PB1 subunit of the influenza A virus RNA polymerase complex.' Journal of Virology 78: 9144-9153.
13 . Fouchier, R. A., V. Munster, et al. (2005). 'Characterization of a novel influenza A virus hemagglutinin subtype (H16) obtained from black-headed gulls.' Journal of Virology 79: 2814-2822.
14 . Gao, Q., Y. Y. Chou, et al. (2012). 'The influenza A virus PB2, PA, NP, and M segments play a pivotal role during genome packaging.' Journal of Virology 86: 7043-7051.
15 . Guu, T. S., L. Dong, et al. (2008). 'Mapping the domain structure of the influenza A virus polymerase acidic protein (PA) and its interaction with the basic protein 1 (PB1) subunit.' Virology 379: 135-142.
16 . Hara, K., F. I. Schmidt, et al. (2006). 'Amino acid residues in the N-terminal region of the PA subunit of influenza A virus RNA polymerase play a critical role in protein stability, endonuclease activity, cap binding, and virion RNA promoter binding.' Journal of Virology 80: 7789-7798.
17 . Hara, K., M. Shiota, et al. (2001). 'Influenza virus RNA polymerase PA subunit is a novel serine protease with Ser624 at the active site.' Genes to Cells 6: 87-97.
18 . Hessle, V., P. Bjork, et al. (2009). 'The exosome associates cotranscriptionally with the nascent pre-mRNP through interactions with heterogeneous nuclear ribonucleoproteins.' Molecular biology of the cell 20: 3459-3470.
19 . Hovhannisyan, R. H. and R. P. Carstens (2007). 'Heterogeneous ribonucleoprotein m is a splicing regulatory protein that can enhance or silence splicing of alternatively spliced exons.' The Journal of biological chemistry 282: 36265-36274.
20 . Huarte, M., A. Falcon, et al. (2003). 'Threonine 157 of influenza virus PA polymerase subunit modulates RNA replication in infectious viruses.' Journal of Virology 77: 6007-6013.
21 . Huarte, M., J. J. Sanz-Ezquerro, et al. (2001). 'PA subunit from influenza virus polymerase complex interacts with a cellular protein with homology to a family of transcriptional activators.' Journal of Virology 75: 8597-8604.
22 . Hulse-Post, D. J., J. Franks, et al. (2007). 'Molecular changes in the polymerase genes (PA and PB1) associated with high pathogenicity of H5N1 influenza virus in mallard ducks.' Journal of Virology 81: 8515-8524.
23 . Jagger, B. W., H. M. Wise, et al. (2012). 'An overlapping protein-coding region in influenza A virus segment 3 modulates the host responce.' Science 337: 199-204.
24 . Jain, R. A. and E. R. Gavis (2008). 'The Drosophila hnRNP M homolog Rumpelstiltskin regulates nanos mRNA localization.' Development 135: 973-982.
25 . Jorba, N., S. Juarez, et al. (2008). 'Analysis of the interaction of influenza virus polymerase complex with human cell factors.' Proteomics 8(10): 2077-2088.
26 . Kafasla, P., M. Patrino-Georgoula, et al. (2002). 'Association of the 72/74-KDa proteins, members of heterogeneous nuclear ribonucleoprotein M group, with the pre-mRNA at early stages of spliceosome assembly.' The Biochemical journal 363: 793-799.
27 . Kashiwagi, T., B. W. Leung, et al. (2009). 'The N-terminal region of the PA subunit of the RNA polymerase of influenza A/HongKong/156/97(H5N1) influences promoter binding.' PloS one 4: e5473.
28 . Kawaguchi, A. and K. Nagata (2007). 'De novo replication of the influenza virus RNA genome is regulated by DNA replicative helicase, MCM.' The EMBO Journal 26: 4566-4575.
29 . Lamb, R. A. and P. W. Choppin (1983). 'The gene structure and replication of influenza virus.' Annual review biochemistry 52: 467-506.
30 . Liang, Y., S. Danzy, et al. (2012). 'Mutational analyses of the influenza A virus polymerase subunit PA reveal distinct functions reveal distinct functions related and unrelated to RNA polymerase activity.' PloS one 7: e29485.
31 . Lleres, D., M. Denegri, et al. (2010). 'Direct interaction between hnRNP-M and CDC5L/PLRG1 proteins affects alternative splice site choice.' EMBO Reports 11: 445-451.
32 . Luo, Z., Z. Li, K.Chen, et al. (2012). 'Engagement of heterogeneous nuclear ribonucleoprotein M with listeriolysin O induces type I interferon expression and restricts Listeria monocytogenes growth in host cells.' Immunobiology.
33 . MacDonald, L. A., S. Aggarwal, et al. (2012). 'Molecular interactions and trafficking of influenza A virus polymerase proteins analyzed by specific monoclonal antibodies.' Virology 426: 51-49.
34 . Maier, H. J., T. Kashiwagi, et al. (2008). 'Differential role of the influenza A virus polymerase PA subunit for vRNA and cRNA promoter binding.' Virology 370: 194-204.
35 . Marko, M., M. Leichter, et al. (2010). 'hnRNP M interacts with PSF and p54(nrb) and co-localizes within defined nuclear structures.' Experimental cell research 316: 390-400.
36 . Mehle, A., V. G. Dugan, et al. (2012). 'Reassortment and mutation of the avian influenza virus polymerase PA subunit overcome species barriers.' Journal of Virology 86: 1750-1757.
37 . Naffakh, N., P. Massin, et al. (2001). 'The transcription/replication activity of the polymerase of influenza A viruses is not correlated with the level of proteolysis induced by the PA subunit.' Virology 285: 244-252.
38 . Nayak, D. P., R. A. Balogun, et al. (2009). 'Influenza virus morphogenesis and budding.' Virus Research 143(2): 147-161.
39 . Nayak, D. P., E. K. Hui, et al. (2004). 'Assembly and budding of influenza virus.' Virus Research 106(2): 147-165.
40 . Neubauer, G., A. King, et al. (1998). 'Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex.' Nature Genetics 20(1): 46-50.
41 . Neumann, G., M. T. Hughes, et al. (2000). 'Influenza A virus NS2 protein mediates vRNP nuclear export through NES-independent interaction with hCRM1.' The EMBO Journal 19(24): 6751-6758.
42 . Newcomb, L. L., R. L. Kuo, et al. (2009). 'Interaction of the influenza a virus nucleocapsid protein with the viral RNA polymerase potentiates unprimed viral RNA replication.' Journal of Virology 83(1): 29-36.
43 . Noble, E., A. Cox, J. Deval, and B. Kim. (2012) 'Endonuclease substrate selectivity characterized with full-length PA of influenza A virus polymerase.' Virology.
44 . Noda, T. and Y. Kawaoka (2010). 'Structure of influenza virus ribonucleoprotein complexes and their packaging into virions.' Reviews in Medical Virology 20(6): 380-391.
45 . Park, E., C. Iaccarino, J. Lee, I. Kwon, et al. (2011). 'Regulatory roles of heterogeneous nuclear ribonucleoprotein M and Nova-1 protein in alternative splicing of dopamine D2 receptor pre-mRNA. ' The Journal of biological chemistry 286: 25301-25308.
46 . Perales, B., J. J. Sanz-Ezquerro, et al. (2000). 'The replication activity of influenza virus polymerase is linked to the capacity of the PA subunit to induce proteolysis.' Journal of Virology 74(3): 1307-1312.
47 . Pinto, L. H. and R. A. Lamb (2006). 'Influenza virus proton channels.' Photochemistry & Photobiolgical Sciences 5(6): 629-632.
48 . Plotch, S. J., M. Bouloy, et al. (1981). 'A unique cap(m7GpppXm)-dependent influenza virion endonuclease cleaves capped RNAs to generate the primers that initiate viral RNA transcription.' Cell 23(3): 847-858.
49 . Regan, J. F., Y. Liang, et al. (2006). 'Defective assembly of influenza A virus due to a mutation in the polymerase subunit PA.' Journal of Virology 80(1): 252-261.
50 . Rodriguez, A., A. Perez-Gonzalez, et al. (2007). 'Influenza virus infection causes specific degradation of the largest subunit of cellular RNA polymerase II.' Journal of Virology 81(10): 5315-5324.
51 . Sanz-Ezquerro, J. J., S.de la Luna, et al. (1995). 'Individual expression of influenza virus PA protein induces degradation of coexpressed proteins.' Journal of Virology 69: 2420-2426.
52 . Shi, L., D. F. Summers, Q. Peng, and J. M. Galarz. (1995) 'Influenza A virus RNA polymerase subunit PB2 is the endonuclease which cleaves host cell mRNA and functions only as the trimeric enzyme. ' Virology 208: 38-47.
53 . Skehel, J. J. and D. C. Wiley (2000). 'Receptor binding and membrane fusion in virus entry: the influenza hemagglutinin.' Annual Review Biochemistry 69: 531-569.
54 . Suzuki, T., A. Ainai, N. Nagata, et al. (2011). 'A novel function of the N-terminal domain of PA in assembly of influenza A virus RNA polymerase.' Biochemical and biophysical research communications 414: 719-726.
55 . Thomas, P., R. A. Forse, and O. Bajenova. (2011) 'Carcinoembryonic antigen(CEA) and its receptor hnRNP M are mediators of metastasis and the inflammatory responce in the liver.' Clinical & experimental metastasis 28: 923-932.
56 . Ulmanen, I., B. A. Broni, et al. (1981). 'Role of two of the influenza virus core P proteins in recognizing cap 1 structures (m7GpppNm) on RNAs and in initiating viral RNA transcription.' Proceedings of Nature Academy Science of the United States of America 78(12): 7355-7359.
57 . Wang W. B., Hsu W. B., Shih J. L., et al. (2013). ' Cellular Protein HAX1 Interacts with the Influenza A Virus PA Polymerase Subunit and Impedes Its Nuclear Translocation.' Journal of Virology 87(1): 110.
58 . Webster, R. G. (2001). 'Virology. A molecular whodunit.' Science 293(5536): 1773-1775.
59 . Webster, R. G., W. J. Bean, et al. (1992). 'Evolution and ecology of influenza A viruses.' Microbiological Reviews 56(1): 152-179.
60 . Wu, W. W. and N. Pante (2009). 'The directionality of the nuclear transport of the influenza A genome is driven by selective exposure of nuclear localization sequences on nucleoprotein.' Virology Journal 6: 68.
61 . Yuan, P., M. Bartlam, et al. (2009). 'Crystal structure of an avian influenza polymerase PA(N) reveals an endonuclease active site.' Nature 458(7240): 909-913.
dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/18694-
dc.description.abstract流感病毒的PA、PB1及PB2蛋白質構成了病毒特有的RNA-dependent RNA polymerase (RdRp),參與病毒複製轉錄的過程,在病毒生活史扮演重要的角色。本實驗室為了更了解病毒複製轉錄的機制,挑選PA進行更進一步的研究。首先,以PA為餌,利用酵母菌雙雜合系統(yeast two-hybrid system)篩選Hela細胞的cDNA資料庫,找出了幾個可能與PA有交互作用的細胞蛋白質,並對其中的hnRNP M進行更深入探討。
在之前的研究中,我們利用帶有tag的PA與hnRNP M蛋白質進行免疫共沉澱法(Co-IP)以及GST pull-down assay,確認兩者之間具有交互作用;在RNase A的作用下,也證實兩者之間並非透過RNA而結合。接著我們想了解此交互作用對病毒或宿主有甚麼生理意義,使用了溶斑分析法((plaque assay))和螢光酶報導系統(Luciferase reporter assay)之後,發現hnRNP M具有抑制流感病毒複製的效果。
為了進一步了解hnRNP M抑制流感病毒複製的機制,我們純化了帶有tag的PA與hnRNP M蛋白質,利用in vitro的方式,發現hnRNP M可以影響PA內切酶的活性。此外,我們也發現到當細胞受到流感病毒感染下,細胞體內的hnRNP M會大量表現。我們也進一步的發現到hnRNP M可以被干擾素α、β誘導而產生。另一方面,我們也發現細胞樣本在受到病毒感染的情況下,會有干擾素α、β的產生。
以上結果顯示,hnRNP M會藉由與PA的交互作用影響PA內切酶的活性,負向調控病毒複製轉錄的功能,而hnRNP M也會受到第一型干擾素的誘導,因此我們推論hnRNP M可能是細胞中抵抗病毒的重要成員之一。
zh_TW
dc.description.abstractInfluenza A virus contains an RNA-dependent RNA polymerase(RdRp) which consists of viral proteins PA, PB1 and PB2. It plays an important role in influenza viral transcription and replication. PA had been shown to be involved in vRNA synthesis and to activate viral mRNA synthesis by regulating the ‘cap-snatching’ process. In previous studies, our lab used yeast two-hybrid system to identify cellular factors that may interact with PA protein. We found that hnRNP M, an mRNA splicing factor, is one of the candidates of PA-interacting cellular proteins.
To further confirm the interaction between PA and hnRNP M, co-immunoprecipitation (Co-IP) and GST pull-down assays were performed. The results demonstrated that PA did specifically interact with hnRNP M. Moreover, we performed plaque assay and Luciferase reporter assay to investigate the influence of hnRNP M on influenza virus replication. Both data showed that hnRNP M reduced the efficiency of virus replication.
In order to figure out the mechanism of how hnRNP M reduced the efficiency of virus replication, we purified hnRNP M protein and PA protein. With in vitro assay, we found out that hnRNP M can reduce the endonuclease activity of PA. Furthermore, through western blot, we showed that the expression level of hnRNP M was induced by influenza virus infection. We also found out that hnRNP M could be induced by interferon α、β. And we also showed that interferon α、β was induced by influenza virus infection.
Together, these data suggest that hnRNP M may be one of the cellular anti-viral proteins that are induced upon influenza A virus infection.
en
dc.description.provenanceMade available in DSpace on 2021-06-08T01:19:53Z (GMT). No. of bitstreams: 1
ntu-103-R01445121-1.pdf: 2190033 bytes, checksum: 64b54833e06e5e4528326bf93bb251d1 (MD5)
Previous issue date: 2014
en
dc.description.tableofcontents中文摘要………………………………………………………………....................... i
Abstract………………………………………………………………………............. ii
目錄.............................................................................................................................. iii
圖目錄...........................................................................................................................vi
緒論……………………………………………………………………………........... 1
材料與方法……………………………………………………………………........... 9
◆ 實驗材料………………………………………………………………………..... 9
一、化學藥品及試劑………………………………………………………………... 9
二、套組試劑………………………………………………………………………... 12
三、抗體……………………………………………………………………………... 13
四、酵素……………………………………………………………………………... 13
五、其它……………………………………………………………………………... 14
六、細胞株 (Cell line)………………………………………………………………. 14
七、質體 (Plasmid)…………………………………………………………………. 15
◆ 實驗方法………………………………………………………………………... 19
一、質體建構 (Construction)……………………………………………………….. 19
二、細菌轉形 (Transformation)…………………………………………………… 19
三、勝任細胞的製備 (Preparation of competent cells)…………………………… 19
四、小量質體製備 (Mini-preparation)………………………………………….….. 21
五、大量質體製備 (Large-scale plasmid isolation) ……………………………….. 22
六、質體轉染 (Transfection)……………………………………………………….. 24
七、慢病毒製備 (Preparation of Lentivirus)……………………………………….. 25
八、慢病毒定量 (quantification of Lentivirus) ………………………………......... 26
九、慢病毒感染 (Lentivirus infection)……………………………………………... 28
十、細胞核糖核酸萃取 (RNA extraction)…………………………………………. 28
十一、反轉錄反應 (Reverse transcription)………………………………………… 29
十二、即時聚合酶鏈鎖反應 (Real-time PCR) …………………………………..... 29
十三、半定量聚合酶鏈鎖反應 (semi-quantitative PCR)………………………..… 30
十四、螢光酶分析 (Luciferase assay)…………………………………………..….. 31
十五、細胞全蛋白質之收取……………………………………………………..…. 31
十六、蛋白質定量………………………………………………………………..…. 32
十七、西方墨點法 (Western blot)………………………………………………….. 32
十八、流感病毒感染及增殖 (Influenza virus infection and amplification)……..… 33
十九、流感病毒之溶斑分析法 (Plaque assay of Influenza virus)………………… 33
二十、Glutathione S-transferase (GST) pull-down 分析………………………….... 35
二十一、免疫共沈澱法 (Co-Immunoprecipitation)……………………………….. 37
二十二、免疫螢光分析 (Immunofluorescence assay, IFA)……………………….. 37
二十三、GST-tag 蛋白質純化................................................................................... 38
二十四、His-tag 蛋白質純化..................................................................................... 38
二十五、體外轉錄(in vitro transcription)................................................................... 39
二十六、體外內切酶活性測試(in vitro endonuclease activity assay)....................... 39
研究目的…………………………………………………………………………..... 40
實驗結果……………………………………………………………………………. 41
一、利用體外試驗(in vitro assay)確認細胞蛋白hnRNP M能抑制病毒蛋白PA的內切酶活性……………………………………………………...........................41
二、A型流感病毒能在H1299細胞中誘導hnRNP M產生.......................................41
三、A型流感病毒無法在H1299-shIFNAR1細胞中誘導hnRNP M產生................ 42
四、hnRNP M能在H1299細胞中被干擾素(interferon,IFN) α、β誘導產生............... 42
五、A型流感病毒能於H1299細胞中促使干擾素(interferon,IFN) α、β產生......... 42
討論…………………………………………………….................………………… 44
圖表............................................................................................................................. 47
附圖…………………………………………………………………………………. 59
附表…………………………………………………………………………………. 62
參考文獻……………………………………………………………………………. 63
dc.language.isozh-TW
dc.title細胞蛋白hnRNP M在A型流感病毒感染下所辦演的角色zh_TW
dc.titleThe role of cellular protein hnRNP M in Influenza A virus infectionen
dc.typeThesis
dc.date.schoolyear102-2
dc.description.degree碩士
dc.contributor.oralexamcommittee鄧述諄(Shu-Chun Teng),楊宏志(Hung-Chih Yang)
dc.subject.keyword流行性感冒病毒,PA蛋白質,hnRNP M,流感病毒轉錄與複製,zh_TW
dc.subject.keywordInfluenza virus,PA,hnRNP M,influenza viral transcription and replication,en
dc.relation.page67
dc.rights.note未授權
dc.date.accepted2014-08-08
dc.contributor.author-college醫學院zh_TW
dc.contributor.author-dept微生物學研究所zh_TW
顯示於系所單位:微生物學科所

文件中的檔案:
檔案 大小格式 
ntu-103-1.pdf
  未授權公開取用
2.14 MBAdobe PDF
顯示文件簡單紀錄


系統中的文件,除了特別指名其著作權條款之外,均受到著作權保護,並且保留所有的權利。

社群連結
聯絡資訊
10617臺北市大安區羅斯福路四段1號
No.1 Sec.4, Roosevelt Rd., Taipei, Taiwan, R.O.C. 106
Tel: (02)33662353
Email: ntuetds@ntu.edu.tw
意見箱
相關連結
館藏目錄
國內圖書館整合查詢 MetaCat
臺大學術典藏 NTU Scholars
臺大圖書館數位典藏館
本站聲明
© NTU Library All Rights Reserved