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完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor吳世雄
dc.contributor.authorChang-Min Chang (Chang-Ming Chang)en
dc.contributor.author張靖敏zh_TW
dc.date.accessioned2021-06-08T00:57:41Z-
dc.date.copyright2015-03-13
dc.date.issued2015
dc.date.submitted2015-02-06
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dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/18277-
dc.description.abstract在現代醫學中,抗生素的發展及其應用在許多成功的感染治療中一直扮演著舉足輕重的角色。然而,隨著幾十年來抗生素的濫用,使抗藥性菌株不斷地增長,進而使現今醫學可運用的抗生素漸漸趨少。舉例來說,在革蘭氏陽性抗藥菌株中,抗甲氧西林金黃色葡萄球菌(MRSA)位於院內交叉感染率及死亡率之首。在此抗生素後世代,新藥的尋找及發展成為了現今刻不容緩的課題。
在本論文的研究中,我們發現一株來自於花蓮縣的本土真菌「Neosartorya fischeri」會分泌一種二級代謝產物並有效的抑制抗甲氧西林金黃色葡萄球菌的生長。本篇研究利用以活性為導向的策略,純化且分離出一系列的燕麥麯黴素衍生物。在穿透式電子顯微鏡研究中,發現其中有三個燕麥麯黴素衍生物藉由抑制細菌細胞壁合成來達成其抑菌之活性。藉由「結構-活性」關係中,我們發現在燕麥麯黴素衍生物上的a,b-共振不飽和羰基是抑菌活性中不可或缺的單元。因此,在經過進一步的文獻搜索以及核磁共振磷谱和質譜的分析中,證實了燕麥麯黴素抑制細胞壁合成的第一步酵素「乙醯氨基葡萄糖轉移酶」。雖然,目前臨床中以磷黴素為乙醯氨基葡萄糖轉移酶之唯一抑制劑;但近年來,抗磷黴素突變菌株卻不斷地被發現及報導。其最嚴重的抗磷黴素機轉,為乙醯氨基葡萄糖轉移酶之催化中心的胺基酸突變(半胱氨酸突變成天門冬氨酸)。
在此研究中,一號與二號燕麥麯黴素衍生物不僅針對野生性也針對抗磷黴素(半胱氨酸突變成天門冬氨酸)之乙醯氨基葡萄糖轉移酶有抑制活性。並在經由分子模擬計算,我們推論出二號化合物競爭性地阻擾酵素受質中間體的產生。最後,在所有衍生物中,二號燕麥麯黴素被證實具為有潛力之先驅化合物,可作為未來發展且抑制抗甲氧西林金黃色葡萄球菌及抗磷黴素之乙醯氨基葡萄糖轉移酶突變的指標性藥物。
zh_TW
dc.description.abstractAntibiotics, the major breakthrough of modern medicine, play a pivotal role in many successful medical practices. However, the emergence of resistant traits against multiple classes of antibiotics has progressively narrowed the available treatment options for some pathogens for decades. Among the Gram-positive drug resistant microbes, methicillin-resistant Staphylococcus aureus (MRSA) is a major pathogen responsible for nosocomial and community-acquired bacterial infections around the world. Since we are now living in the post-antibiotics era in which the crisis of antimicrobial resistance is worse than ever before, discovering alternative antibiotics is urgent to counteract the ever increasing phenomenon.
In this study, we report four avenaciolide derivatives (1-4) isolated from Neosartorya fischeri, an indigenous fungus from Hualien, Taiwan, three of which had significant antimicrobial activity against MRSA. Based on the TEM results, the morphology of avenaciolide-treated cells was protoplast-like, which indicated that cell wall biosynthesis was interrupted. Comparing the structures and MICs of 1-4, the the a,b-unsaturated carbonyl group seems to be an indispensable moiety for antimicrobial activity. Based on a structural similarity survey of other inhibitors with the same moiety, we revealed that MurA was the drug target. This conclusion was validated by 31P NMR spectroscopy and MS/MS analysis. Although fosfomycin, which is the only clinically used MurA-targeted antibiotic, is ineffective for treating bacteria harboring the catalytically important Cys-to-Asp mutation, avenaciolides 1 and 2 inhibited not only wild type but also fosfomycin-resistant MurA in an unprecedented way. Molecular simulation revealed that 2 competitively perturbs the formation of the tetrahedral intermediate in MurA. Our findings demonstrated that 2 is a potent inhibitor of MRSA and fosfomycin-resistant MurA, laying the foundation for the development of new scaffolds for MurA-targeted antibiotics.
en
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Previous issue date: 2015
en
dc.description.tableofcontentsContents
1. INTRODUCTION 1
1-1 Antibiotic resistance: a global health threat 1
1-2 Resistance on the rise 2
1-3 Methicillin-resistant Staphylococcus aureus (MRSA) 4
1-4-1 Golden ages of antibiotics 5
1-4-2 Drug-resistant mechanisms in MRSA 8
1-5 Targeting bacterial cell wall biosynthesis as an alternative for combating MRSA 9
1-5-2 The functions and components of cell wall 10
1-5-3 Cell wall biosynthesis pathway in MRSA 13
1-6 MurA as an attractive target for combating MRSA 15
1-6-1 The catalytic mechanism of MurA 16
1-6-2 Fosfomycin: the only clinically MurA-targeted antibiotics 18
1-7 Natural products as a good source for discovery new scaffold of antibiotics 21
1-8 Aim of this study 21
2. Materials and methods 23
2-1 General Methods 23
2-2 Flow chart of finding the bioactive fungi and compounds 24
2-3 Identification of the bioactive fungi as “Neosartorya fischeri” 24
2-4 Scale-up solid-state fermentation of Neosartorya fischeri and extraction processes of bioactive compounds 26
2-5 Mosher’s esters of 2 and 3 28
2-6 Antimicrobial activity MIC assays. 28
2-7 Transmission electron microscopy (TEM) 29
2-8 Expression MRSA MurAWT and MRSA MurAC119D of Staphylococcus aureus strain ATCC 33592 and E. coli K12 BW-25113 30
2-9 Characterization of the inhibitory activity of avenaciolide analogues against MurA by a 31P NMR spectroscopy-based method 32
2-10 The reaction of avenaciolide analogues with cysteine and glutathione (GSH) 33
2-11 Peptide mapping, mass spectrometry, and sequencing of avenaciolide-labeled peptides in inactivated MurA. 34
2-12 Quantify the IC50 of 1-4 against MurA by malachite green assay 35
2-13 Disk diffusion assay for detecting resistance to fosfomycin and 2 36
2-14 3D-Model structure of S. aureus (strain ATCC33592) MurA 36
2-15 Molecular Simulation 37
3. Results and Discussion 38
3-1 Identification of avenaciolides 1-4 38
3-1-1 Structure interpretation of avenaciolides 1 39
3-1-2 Structure interpretation of avenaciolides 4 42
3-1-3 Structure interpretation of avenaciolides 3 44
3-1-4 Structure interpretation of avenaciolides 2 46
3-1-5 Revise a similar structure of avenaciolides 3: neosartolactone 47
3-2 The a,b-unsaturated carbonyl moiety in avenaciolides is essential for disrupting cell wall assembly 53
3-3 Identification of MRSA MurA as a molecular target of avenaciolides by 31P NMR 57
3-4 Avenaciolide 2 has unprecedented potency against fosfomycin-resistant MurA 60
3-5 Avenaciolides 1-3 are targeted covalent inhibitors (TCIs) of MRSA MurA 62
3-5-1 Validation of avenaciolides 1-3 as TCI through Michael addition 62
3-5-2 Fosfomycin and 1-3 are TCIs which will initially binding to target protein achieving their specificities and efficacy 67
3-6 Docking calculations revealed 2 noncovalently binds to MurA first (MurAC119D-2) then forming a covalent bond adduct (MurAWT-2). 69
3-7 Possible mechanisms for MRSA MurA inhibition by hindering of the tetrahedral intermediate (THI) formation. 71
3-8 The dead-end mechanism explain why a,b-unsaturated moiety is imperative for MurA inhibitory activity 73
3-9 The future work for structure-based drug design 75
3-10 The functional group “a,b-unsaturated carbonyl moiety” for MurA activities and other function group with MurA activities. 76
4. Conclusion 80
Reference 82
Appendix 89
dc.language.isozh-TW
dc.title台灣本土真菌Neosartorya fischeri之二次代謝物avenaciolides於抑制抗甲氧西林金黃色葡萄球菌之機轉zh_TW
dc.titleAvenaciolides, secondary metabolites from indigenous fungus Neosartorya fischeri, on inhibiting methicillin-resistant Staphylococcus aureus (MRSA)en
dc.typeThesis
dc.date.schoolyear103-1
dc.description.degree博士
dc.contributor.oralexamcommittee張文章,梁博煌,羅禮強,王正中,楊玉良
dc.subject.keyword抗甲氧西林金黃色葡萄球菌(MRSA),燕麥?黴素,a,b-共振不飽和羰基,醯氨基葡萄糖轉移?,磷黴素,zh_TW
dc.subject.keywordMRSA,post-antibiotics age,avenaciolide derivatives,Neosartorya fischeri,MurA-targeted antibiotic,en
dc.relation.page120
dc.rights.note未授權
dc.date.accepted2015-02-06
dc.contributor.author-college生命科學院zh_TW
dc.contributor.author-dept生化科學研究所zh_TW
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