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| DC 欄位 | 值 | 語言 |
|---|---|---|
| dc.contributor.advisor | 王愛玉 | |
| dc.contributor.author | Erh-Chieh Hsiang | en |
| dc.contributor.author | 相爾傑 | zh_TW |
| dc.date.accessioned | 2021-06-07T18:07:45Z | - |
| dc.date.copyright | 2012-07-27 | |
| dc.date.issued | 2012 | |
| dc.date.submitted | 2012-07-20 | |
| dc.identifier.citation | 參考文獻
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Biocatalysis and Biotransformation 24: 311-342 Sheng F, Jia X, Yep A, Preiss J, Geiger JH (2009a) The crystal structures of the open and catalytically competent closed conformation of Escherichia coli glycogen synthase. The Journal of biological chemistry 284: 17796-17807 Sheng F, Yep A, Feng L, Preiss J, Geiger JH (2009b) Oligosaccharide binding in Escherichia coli glycogen synthase. Biochemistry 48: 10089-10097 Steiner K, Hagelueken G, Messner P, Schaffer C, Naismith JH (2010) Structural basis of substrate binding in WsaF, a rhamnosyltransferase from Geobacillus stearothermophilus. Journal of Molecular Biology 397: 436-447 Tsai ZC, Wang AY (2003) Identification of rice manganese-dependent protein kinases that phosphorylate sucrose synthase at multiple serine residues. Botanical Bulletin of Academia Sinica 44: 141-150 Tvaroska I (2004) Molecular modeling insights into the catalytic mechanism of the retaining galactosyltransferase LgtC. Carbohydrate Research 339: 1007-1014 Van handel E (1968) Direct microdetermination of sucrose. Analytical Biochemistry 22: 280-283 Wang AY, Kao MH, Yang WH, Sayion Y, Liu LF, Lee PD, Su JC (1999) Differentially and developmentally regulated expression of three rice sucrose synthase genes. Plant and Cell Physiology 40: 800-807 Yep A, Ballicora MA, Preiss J (2006) The ADP-glucose binding site of the Escherichia coli glycogen synthase. Archives of Biochemistry and Biophysics 453: 188-196 Yep A, Ballicora MA, Sivak MN, Preiss J (2004) Identification and characterization of a critical region in the glycogen synthase from Escherichia coli. The Journal of biological chemistry 279: 8359-8367 Zheng Y, Anderson S, Zhang Y, Garavito RM (2011) The structure of sucrose synthase-1 from Arabidopsis thaliana and its functional implications. The Journal of biological chemistry 286: 36108-36118 伊央•撒耘 (2001) 水稻蔗糖合成酶結構與功能之硏究,博士論文,國立臺灣大學農業化學研究所。 張睿哲 (2011) 水稻蔗糖合成酶 RSuS1 之研究:受糖調控之基因表現與細胞內定位,博士論文,國立臺灣大學生化科技學硏究所。 黃玉嬌 (2006) 水稻蔗糖合成酶 RSuS1 野生行與突變型蛋白質之表現與檢定,碩士論文,國立臺灣大學微生物與生化學研究所。 黃卓萱 (2007) 水稻蔗糖合成酶 RSuS3 突變株之分析與結構性質探討,碩士論文,國立臺灣大學微生物與生化學研究所。 黃德宜 (2003) 水稻蔗糖合成酶 RSuS3 基因表現與酵素功能之探討,博士論文,國立臺灣大學農業化學研究所。 蔡青霖 (2007) 酵母菌 Pichia pastoris 中表現重組水稻蔗糖合成酶 RSuS1 及 RSuS3 之性質探討,碩士論文,國立臺灣大學微生物與生化學研究所。 蔡逸君 (2006) 酵母菌 Pichia pastoris 中表現重組水稻蔗糖合成酶 RSuS3 之性質與結構探討,碩士論文,國立臺灣大學微生物與生化學研究所。 | |
| dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/16275 | - |
| dc.description.abstract | 摘要
蔗糖合成酶 (SuS) 在植物中催化蔗糖和 UDP 轉換為果糖和 UDPG 的可逆轉換。此酵素屬於糖基轉移酶中第四家族 (GT4)。GT4家族的成員在序列上有著一段具高度保守性的序列:E-X7-E motif,此序列兩端為 Glu,中間間隔七個保守性較低的胺基酸。除了 GT4 外,GT3 及 GT5 家族的糖基轉移酶也具有此序列。已有研究發現,E-X7-E motif對於這些酵素的活性相當重要,推測其功能可能為穩定基質,並使基質正確定位至催化活性區。 本研究探討此段序列在水稻蔗糖合成酶 RSuS3 催化活性上的可能功能。以定位點突變法建構四個RSuS3突變株 (E678D, E678Q, E686D, E686Q),並利用酵母菌 Pichia pastoris 表現系統進行重組野生型與突變蛋白質的表現與純化。由活性測定結果顯示,RSuS3(E686D) 突變株仍保有部分活性,其對蔗糖與 UDP 之 Km 值明顯增大。由本研究結果推測,這 E-X7-E motif 上的兩個 Glu 對於基質以及過渡態的穩定扮演重要角色,這兩個位點的突變可能會干擾基質與酵素的相互作用,造成 Km 值的增大或是酵素活性的喪失, | zh_TW |
| dc.description.abstract | Sucrose synthase catalyzes the reversible conversion of sucrose and UDP into fructose and UDPG in plants. The enzyme belongs to the glycosyltransferase GT4 family. The members of GT4 have a highly conserved motif, the E-X7-E motif, in their sequence. This motif has two glutamates at two sides, which are separated by seven less conserved amino acids. Besides GT4, enzymes in families GT3 and GT5 also contain this motif. It has been reported that E-X7-E motif is important in the activity of enzyme, it may have the function in substrate stabilization, and position substrates into active site.
This work examined the possible function of this motif in rice sucrose synthase 3 (RSuS3). Site-directed mutagenesis was employed to construct four mutants of RSuS3 (E678D, E678Q, E686D, E686Q) and the recombinant wild-type and mutant proteins were expressed and purified from Pichia pastoris. The results of activity assays showed that only RSuS3(E686D) retained partial enzyme activity. The Km values of mutant RSuS3(E686D) were significantly increased. The results of this study suggested that the two glutamates in the E-X7-E motif may have an important role in substrate binding, and also in the stabilization of transition state; mutagenesis on these two residues may disrupt the interaction of enzyme and substrates, which resulted in the increase of Km or the loss of enzyme activity. | en |
| dc.description.provenance | Made available in DSpace on 2021-06-07T18:07:45Z (GMT). No. of bitstreams: 1 ntu-101-R99b22005-1.pdf: 9072156 bytes, checksum: a5f0137fd8c0f4d6f1334e508cac5f2e (MD5) Previous issue date: 2012 | en |
| dc.description.tableofcontents | 目錄
中文摘要………………………………………………………..........…. I 英文摘要………………………………………………………..……… II 縮寫表………………………………………………………..………... III 目錄……………………………..……………………………………… V 第一章 研究背景…………………………………………………….… 1 第一節 蔗糖合成酶的生化性質與生理功能…………………...…… 1 第二節 糖基轉移酶的催化機制與結構…………………………...… 2 2.1 糖基轉移酶…………………………….………………...……… 2 2.2 糖基轉移酶的結構摺疊 (fold)……………………………… 3 2.3 糖基轉移酶的催化機制………………………………………… 3 第三節 蔗糖合成酶的結構與催化機制……………………...……… 4 第四節 E-X 7 -E motif……………………...……………………...…… 5 第五節 水稻蔗糖合成酶的研究……………………………...……… 6 第六節 本論文的研究目的……………………...…………………… 7 第二章 材料與方法……………………...………………………..…… 8 第一節 實驗材料與藥品..………………………...……………..…… 8 1.1 菌種.…………………………..……………...……………..…… 8 1.2 質體.………………………………..………...……………..…… 8 1.3 藥品.………………………..………………...……………..…… 8 1.3.1 一般化學藥品…………......……………………………….… 8 1.3.2 限制酶與聚合酶…..…………………………………….…… 8 第二節 實驗儀器.………………………...………………….…..…… 9 2.1 蛋白質電泳與轉印設備.………………..…...……………..…… 9 2.2 離心機.………………………...………………………..…..…… 9 2.3 水浴槽.………………………...………………………..…..…… 9 2.4 蛋白質純化設備.……………………...………………..…..…… 9 2.5 其它儀器.………………………...……………………..……… 10 第三節 實驗方法……………………...………………..…………… 10 3.1 於酵母菌 Pichia pastoris 中表現突變型重組 RSuS3…….… 10 3.1.1 以定位點突變法建構突變型重組 RSuS3(E678Q) 表現質體 10 3.1.1.1 質體 DNA 小量製備………………………………...… 10 3.1.1.2 以聚合酶連鎖反應合成帶有突變點的質體 DNA….… 11 3.1.1.3 聚合酶連鎖反應產物以限制酶 DpnI 截切…………… 11 3.1.1.4 質體 DNA 對大腸桿菌之轉形………………………… 12 3.1.1.5 轉形株之檢定…………………………………………… 12 3.1.2 表現質體的酵母菌之轉形…………………………….…… 12 3.1.2.1 直線型質體 DNA 的製備……………………...……… 13 3.1.2.2 酵母菌勝任細胞之製備………………………………… 13 3.1.2.3 電穿孔轉形……………………………………………… 13 3.1.3 轉形株之鑑定…………….………………………………… 13 3.1.3.1 以甲醇代謝與否鑑定轉形株…………………………… 14 3.1.3.2 酵母菌染色體 DNA 的抽取…………………...……… 14 3.1.3.3 以聚合酶連鎖反應鑑定轉形株………………………… 14 3.2 重組蛋白質之表現與純化…………………..………………… 15 3.2.1 小量表現與粗抽液製備………………………………….… 15 3.2.2 大量表現……………………………………………….…… 16 3.2.3 粗抽液製備與硫酸銨分劃…………………………….…… 16 3.2.4 離子交換管柱層析…………………………………….…… 16 3.2.5 膠體過濾管柱層析…………………………………….…… 16 3.3 蔗糖合成酶活性測定法………………………..………….…… 17 3.3.1 蔗糖分解方向之活性測定…………………………….…… 17 3.3.1.1 酵素耦合法……………………………...………….…… 17 3.3.1.2 還原糖定量法………………………………...…….…… 17 3.3.2 蔗糖合成方向之活性測定…………….………...…….…… 18 3.3.2.1 Anthrone 定量法……………………………...…….…… 18 3.4 蛋白質定量與電泳分析………………...…….……………..… 19 3.4.1 蛋白質定量…………………...……...…….……………..… 19 3.4.2 蛋白質電泳…………………...……...…….……………..… 19 3.4.3 西方轉印……………………...……...…….……………..… 20 3.4.4 免疫呈色法…………………...……...…….……………..… 20 3.4.5 分子量測定…………………...……...…….……………..… 21 3.4.6 酵素動力學分析試驗...……………...…….……………..… 21 3.4.7 分解方向活化能測定...……………...…….……………..… 21 3.4.8 分解方向反應最適 pH 值測定…...…….……………....… 22 3.5 水稻蔗糖合成酶三級結構模擬………...…….……………..… 22 第三章 結果…...…….………………………………………….....… 23 第一節 RSuS3 突變株之建構………………………...…….........… 23 第二節 野生型與突變型 RSuS3 在 P. pastoris 中之表現與活性 分析…………..........................................................… 23 2.1 小量重組 RSuS3 之表現……...............................................… 23 2.2 重組 RSuS3 蛋白質的大量表現與純化…….......................… 24 2.2.1 野生型重組 RSuS3 的表現與純化..................................… 24 2.2.2 RSuS3(E678D) 突變株的表現與純化...............................… 25 2.2.3 RSuS3(E678Q) 突變株的表現與純化...............................… 25 2.2.4 RSuS3(E686D) 突變株的表現與純化...............................… 25 2.2.5 RSuS3(E686Q) 突變株的表現與純化...............................… 25 2.3 純化之野生型與突變型重組 RSuS3 之酵素活性與分子量 檢定.........................................................................................… 26 第三節 野生型重組 RSuS3 與 RSuS3(E686D) 突變株之酵素動 力學分析.............................................................................… 26 3.1 蔗糖分解方向之動力學分析...................................................… 26 第四節 野生型重組 RSuS3 與 RSuS3(E686D) 突變株其它性質 比較.....................................................................................… 27 4.1 反應溫度對酵素活性之影響………......................................… 27 4.2 pH 值對酵素活性之影響………………………………........… 27 第五節 水稻蔗糖合成酶三級結構模擬............................................... 28 第四章 討論.....................................................................................… 29 第五章 未來展望...............................................................................… 32 第一節 野生型重組 RSuS3 與 RSuS3(E686D) 合成方向動力學 分析及其它性質檢定.........................................................… 32 第二節 酵素活性區其它保守性胺基酸.........................................… 32 參考文獻.............................................................................................… 33 圖與表.................................................................................................… 38 | |
| dc.language.iso | zh-TW | |
| dc.subject | 蔗糖合成酶 | zh_TW |
| dc.subject | 糖基轉移酶 | zh_TW |
| dc.subject | E-X7-E motif | zh_TW |
| dc.subject | 定位點突變法 | zh_TW |
| dc.subject | 酵素動力學 | zh_TW |
| dc.subject | sucrose synthase | en |
| dc.subject | E-X7-E motif | en |
| dc.subject | site-directed mutagenesis | en |
| dc.subject | glycosyltransferase | en |
| dc.subject | enzyme kinetic | en |
| dc.title | 水稻蔗糖合成酶中 E-X7-E motif 之功能探討 | zh_TW |
| dc.title | Studies on the function of the E-X7-E motif in rice sucrose synthase | en |
| dc.type | Thesis | |
| dc.date.schoolyear | 100-2 | |
| dc.description.degree | 碩士 | |
| dc.contributor.oralexamcommittee | 宋賢一,張珍田,楊健志,陳佩燁 | |
| dc.subject.keyword | 蔗糖合成酶,糖基轉移酶,E-X7-E motif,定位點突變法,酵素動力學, | zh_TW |
| dc.subject.keyword | sucrose synthase,glycosyltransferase,E-X7-E motif,site-directed mutagenesis,enzyme kinetic, | en |
| dc.relation.page | 64 | |
| dc.rights.note | 未授權 | |
| dc.date.accepted | 2012-07-20 | |
| dc.contributor.author-college | 生命科學院 | zh_TW |
| dc.contributor.author-dept | 生化科技學系 | zh_TW |
| 顯示於系所單位: | 生化科技學系 | |
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