Skip navigation

DSpace

機構典藏 DSpace 系統致力於保存各式數位資料(如:文字、圖片、PDF)並使其易於取用。

點此認識 DSpace
DSpace logo
English
中文
  • 瀏覽論文
    • 校院系所
    • 出版年
    • 作者
    • 標題
    • 關鍵字
    • 指導教授
  • 搜尋 TDR
  • 授權 Q&A
    • 我的頁面
    • 接受 E-mail 通知
    • 編輯個人資料
  1. NTU Theses and Dissertations Repository
  2. 生命科學院
  3. 生化科技學系
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/16275
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor王愛玉
dc.contributor.authorErh-Chieh Hsiangen
dc.contributor.author相爾傑zh_TW
dc.date.accessioned2021-06-07T18:07:45Z-
dc.date.copyright2012-07-27
dc.date.issued2012
dc.date.submitted2012-07-20
dc.identifier.citation參考文獻
Arnold K, Bordoli L, Kopp J, Schwede T (2006) The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22: 195-201
Birnboim HC, Doly J (1979) Rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Research 7: 1513-1523
Bologa KL, Fernie AR, Leisse A, Loureiro ME, Geigenberger P (2003) A bypass of sucrose synthase leads to low internal oxygen and impaired metabolic performance in growing potato tubers. Plant Physiology 132: 2058-2072
Bradford MM (1976) Rapid and sensitive method for quantitation of microgram quantities of protein utilizing principle of protein-dye binding. Analytical Biochemistry 72: 248-254
Breton C, Snajdrova L, Jeanneau C, Koca J, Imberty A (2006) Structures and mechanisms of glycosyltransferases. Glycobiology 16: 29R-37R
Buschiazzo A, Ugalde JE, Guerin ME, Shepard W, Ugalde RA, Alzari PM (2004) Crystal structure of glycogen synthase: homologous enzymes catalyze glycogen synthesis and degradation. Embo Journal 23: 3196-3205
Campbell JA, Davies GJ, Bulone V, Henrissat B (1997) A classification of nucleotide-diphospho-sugar glycosyltransferases based on amino acid sequence similarities. The Biochemical journal 326 ( Pt 3): 929-939
Cho JI, Kim HB, Kim CY, Hahn TR, Jeon JS (2011) Identification and characterization of the duplicate rice sucrose synthase genes OsSUS5 and OsSUS7 which are associated with the plasma membrane. Molecules and cells 31: 553-561
Chua TK, Bujnicki JM, Tan TC, Huynh F, Patel BK, Sivaraman J (2008) The structure of sucrose phosphate synthase from Halothermothrix orenii reveals its mechanism of action and binding mode. The Plant cell 20: 1059-1072
Cid E, Gomis RR, Geremia RA, Guinovart JJ, Ferrer JC (2000) Identification of two essential glutamic acid residues in glycogen synthase. The Journal of biological chemistry 275: 33614-33621
Coutinho PM, Deleury E, Davies GJ, Henrissat B (2003) An evolving hierarchical family classification for glycosyltransferases. Journal of molecular biology 328: 307-317
Errey JC, Lee SS, Gibson RP, Fleites CM, Barry CS, Jung PMJ, O'Sullivan AC, Davis BG, Davies GJ (2010) Mechanistic insight into enzymatic glycosyl transfer with retention of configuration through analysis of glycomimetic inhibitors. Angewandte Chemie-International Edition 49: 1234-1237
Hirose T, Scofield GN, Terao T (2008) An expression analysis profile for the entire sucrose synthase gene family in rice. Plant Science 174: 534-543
Horcajada C, Guinovart JJ, Fita I, Ferrer JC (2006) Crystal structure of an archaeal glycogen synthase - Insights into oligomerization and substrate binding of eukaryotic glycogen synthases. Journal of Biological Chemistry 281: 2923-2931
Horst I, Welham T, Kelly S, Kaneko T, Sato S, Tabata S, Parniske M, Wang TL (2007) TILLING mutants of Lotus japonicus reveal that nitrogen assimilation and fixation can occur in the absence of nodule-enhanced sucrose synthase. Plant Physiology 144: 806-820
Kleczkowski LA, Kunz S, Wilczynska M (2010) Mechanisms of UDP-glucose synthesis in plants. Critical Reviews in Plant Sciences 29: 191-203
Koch K (2004) Sucrose metabolism: regulatory mechanisms and pivotal roles in sugar sensing and plant development. Current opinion in plant biology 7: 235-246
Kostova Z, Yan BC, Vainauskas S, Schwartz R, Menon AK, Orlean P (2003) Comparative importance in vivo of conserved glutamate residues in the EX7E motif retaining glycosyltransferase Gpi3p, the UDP-GlcNAc-binding subunit of the first enzyme in glycosylphosphatidylinositol assembly. European Journal of Biochemistry 270: 4507-4514
Lairson LL, Henrissat B, Davies GJ, Withers SG (2008) Glycosyltransferases: structures, functions, and mechanisms. Annual review of biochemistry 77: 521-555
Liao YC, Wang AY (2003) Sugar-modulated gene expression of sucrose synthase in suspension-cultured cells of rice. Physiologia Plantarum 118: 319-327
MacGregor EA (2002) Possible structure and active site residues of starch, glycogen, and sucrose synthases. Journal of Protein Chemistry 21: 297-306
Nelson N (1944) A photometric adaptation of the Somogyi method for the determination of glucose. Journal of Biological Chemistry 153: 375-380
Persson K, Ly HD, Dieckelmann M, Wakarchuk WW, Withers SG, Strynadka NCJ (2001) Crystal structure of the retaining galactosyltransferase LgtC from Neisseria meningitidis in complex with donor and acceptor sugar analogs. Nature Structural Biology 8: 166-175
Rohrig H, Schmidt J, Miklashevichs E, Schell J, John M (2002) Soybean ENOD40 encodes two peptides that bind to sucrose synthase. Proceedings of the National Academy of Sciences of the United States of America 99: 1915-1920
Ruane KM, Davies GJ, Martinez-Fleites C (2008) Crystal structure of a family GT4 glycosyltransferase from Bacillus anthracis ORF BA1558. Proteins 73: 784-787
Seibel J, Jordening HJ, Buchholz K (2006) Glycosylation with activated sugars using glycosyltransferases and transglycosidases. Biocatalysis and Biotransformation 24: 311-342
Sheng F, Jia X, Yep A, Preiss J, Geiger JH (2009a) The crystal structures of the open and catalytically competent closed conformation of Escherichia coli glycogen synthase. The Journal of biological chemistry 284: 17796-17807
Sheng F, Yep A, Feng L, Preiss J, Geiger JH (2009b) Oligosaccharide binding in Escherichia coli glycogen synthase. Biochemistry 48: 10089-10097
Steiner K, Hagelueken G, Messner P, Schaffer C, Naismith JH (2010) Structural basis of substrate binding in WsaF, a rhamnosyltransferase from Geobacillus stearothermophilus. Journal of Molecular Biology 397: 436-447
Tsai ZC, Wang AY (2003) Identification of rice manganese-dependent protein kinases that phosphorylate sucrose synthase at multiple serine residues. Botanical Bulletin of Academia Sinica 44: 141-150
Tvaroska I (2004) Molecular modeling insights into the catalytic mechanism of the retaining galactosyltransferase LgtC. Carbohydrate Research 339: 1007-1014
Van handel E (1968) Direct microdetermination of sucrose. Analytical Biochemistry 22: 280-283
Wang AY, Kao MH, Yang WH, Sayion Y, Liu LF, Lee PD, Su JC (1999) Differentially and developmentally regulated expression of three rice sucrose synthase genes. Plant and Cell Physiology 40: 800-807
Yep A, Ballicora MA, Preiss J (2006) The ADP-glucose binding site of the Escherichia coli glycogen synthase. Archives of Biochemistry and Biophysics 453: 188-196
Yep A, Ballicora MA, Sivak MN, Preiss J (2004) Identification and characterization of a critical region in the glycogen synthase from Escherichia coli. The Journal of biological chemistry 279: 8359-8367
Zheng Y, Anderson S, Zhang Y, Garavito RM (2011) The structure of sucrose synthase-1 from Arabidopsis thaliana and its functional implications. The Journal of biological chemistry 286: 36108-36118
伊央•撒耘 (2001) 水稻蔗糖合成酶結構與功能之硏究,博士論文,國立臺灣大學農業化學研究所。
張睿哲 (2011) 水稻蔗糖合成酶 RSuS1 之研究:受糖調控之基因表現與細胞內定位,博士論文,國立臺灣大學生化科技學硏究所。
黃玉嬌 (2006) 水稻蔗糖合成酶 RSuS1 野生行與突變型蛋白質之表現與檢定,碩士論文,國立臺灣大學微生物與生化學研究所。
黃卓萱 (2007) 水稻蔗糖合成酶 RSuS3 突變株之分析與結構性質探討,碩士論文,國立臺灣大學微生物與生化學研究所。
黃德宜 (2003) 水稻蔗糖合成酶 RSuS3 基因表現與酵素功能之探討,博士論文,國立臺灣大學農業化學研究所。
蔡青霖 (2007) 酵母菌 Pichia pastoris 中表現重組水稻蔗糖合成酶 RSuS1 及 RSuS3 之性質探討,碩士論文,國立臺灣大學微生物與生化學研究所。
蔡逸君 (2006) 酵母菌 Pichia pastoris 中表現重組水稻蔗糖合成酶 RSuS3 之性質與結構探討,碩士論文,國立臺灣大學微生物與生化學研究所。
dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/16275-
dc.description.abstract摘要
蔗糖合成酶 (SuS) 在植物中催化蔗糖和 UDP 轉換為果糖和 UDPG 的可逆轉換。此酵素屬於糖基轉移酶中第四家族 (GT4)。GT4家族的成員在序列上有著一段具高度保守性的序列:E-X7-E motif,此序列兩端為 Glu,中間間隔七個保守性較低的胺基酸。除了 GT4 外,GT3 及 GT5 家族的糖基轉移酶也具有此序列。已有研究發現,E-X7-E motif對於這些酵素的活性相當重要,推測其功能可能為穩定基質,並使基質正確定位至催化活性區。
本研究探討此段序列在水稻蔗糖合成酶 RSuS3 催化活性上的可能功能。以定位點突變法建構四個RSuS3突變株 (E678D, E678Q, E686D, E686Q),並利用酵母菌 Pichia pastoris 表現系統進行重組野生型與突變蛋白質的表現與純化。由活性測定結果顯示,RSuS3(E686D) 突變株仍保有部分活性,其對蔗糖與 UDP 之 Km 值明顯增大。由本研究結果推測,這 E-X7-E motif 上的兩個 Glu 對於基質以及過渡態的穩定扮演重要角色,這兩個位點的突變可能會干擾基質與酵素的相互作用,造成 Km 值的增大或是酵素活性的喪失,
zh_TW
dc.description.abstractSucrose synthase catalyzes the reversible conversion of sucrose and UDP into fructose and UDPG in plants. The enzyme belongs to the glycosyltransferase GT4 family. The members of GT4 have a highly conserved motif, the E-X7-E motif, in their sequence. This motif has two glutamates at two sides, which are separated by seven less conserved amino acids. Besides GT4, enzymes in families GT3 and GT5 also contain this motif. It has been reported that E-X7-E motif is important in the activity of enzyme, it may have the function in substrate stabilization, and position substrates into active site.
This work examined the possible function of this motif in rice sucrose synthase 3 (RSuS3). Site-directed mutagenesis was employed to construct four mutants of RSuS3 (E678D, E678Q, E686D, E686Q) and the recombinant wild-type and mutant proteins were expressed and purified from Pichia pastoris. The results of activity assays showed that only RSuS3(E686D) retained partial enzyme activity. The Km values of mutant RSuS3(E686D) were significantly increased. The results of this study suggested that the two glutamates in the E-X7-E motif may have an important role in substrate binding, and also in the stabilization of transition state; mutagenesis on these two residues may disrupt the interaction of enzyme and substrates, which resulted in the increase of Km or the loss of enzyme activity.
en
dc.description.provenanceMade available in DSpace on 2021-06-07T18:07:45Z (GMT). No. of bitstreams: 1
ntu-101-R99b22005-1.pdf: 9072156 bytes, checksum: a5f0137fd8c0f4d6f1334e508cac5f2e (MD5)
Previous issue date: 2012
en
dc.description.tableofcontents目錄
中文摘要………………………………………………………..........…. I
英文摘要………………………………………………………..……… II
縮寫表………………………………………………………..………... III
目錄……………………………..……………………………………… V
第一章 研究背景…………………………………………………….… 1
第一節 蔗糖合成酶的生化性質與生理功能…………………...…… 1
第二節 糖基轉移酶的催化機制與結構…………………………...… 2
2.1 糖基轉移酶…………………………….………………...……… 2
2.2 糖基轉移酶的結構摺疊 (fold)……………………………… 3
2.3 糖基轉移酶的催化機制………………………………………… 3
第三節 蔗糖合成酶的結構與催化機制……………………...……… 4
第四節 E-X 7 -E motif……………………...……………………...…… 5
第五節 水稻蔗糖合成酶的研究……………………………...……… 6
第六節 本論文的研究目的……………………...…………………… 7
第二章 材料與方法……………………...………………………..…… 8
第一節 實驗材料與藥品..………………………...……………..…… 8
1.1 菌種.…………………………..……………...……………..…… 8
1.2 質體.………………………………..………...……………..…… 8

1.3 藥品.………………………..………………...……………..…… 8
1.3.1 一般化學藥品…………......……………………………….… 8
1.3.2 限制酶與聚合酶…..…………………………………….…… 8
第二節 實驗儀器.………………………...………………….…..…… 9
2.1 蛋白質電泳與轉印設備.………………..…...……………..…… 9
2.2 離心機.………………………...………………………..…..…… 9
2.3 水浴槽.………………………...………………………..…..…… 9
2.4 蛋白質純化設備.……………………...………………..…..…… 9
2.5 其它儀器.………………………...……………………..……… 10
第三節 實驗方法……………………...………………..…………… 10
3.1 於酵母菌 Pichia pastoris 中表現突變型重組 RSuS3…….… 10
3.1.1 以定位點突變法建構突變型重組 RSuS3(E678Q) 表現質體 10
3.1.1.1 質體 DNA 小量製備………………………………...… 10
3.1.1.2 以聚合酶連鎖反應合成帶有突變點的質體 DNA….… 11
3.1.1.3 聚合酶連鎖反應產物以限制酶 DpnI 截切…………… 11
3.1.1.4 質體 DNA 對大腸桿菌之轉形………………………… 12
3.1.1.5 轉形株之檢定…………………………………………… 12
3.1.2 表現質體的酵母菌之轉形…………………………….…… 12
3.1.2.1 直線型質體 DNA 的製備……………………...……… 13


3.1.2.2 酵母菌勝任細胞之製備………………………………… 13
3.1.2.3 電穿孔轉形……………………………………………… 13
3.1.3 轉形株之鑑定…………….………………………………… 13
3.1.3.1 以甲醇代謝與否鑑定轉形株…………………………… 14
3.1.3.2 酵母菌染色體 DNA 的抽取…………………...……… 14
3.1.3.3 以聚合酶連鎖反應鑑定轉形株………………………… 14
3.2 重組蛋白質之表現與純化…………………..………………… 15
3.2.1 小量表現與粗抽液製備………………………………….… 15
3.2.2 大量表現……………………………………………….…… 16
3.2.3 粗抽液製備與硫酸銨分劃…………………………….…… 16
3.2.4 離子交換管柱層析…………………………………….…… 16
3.2.5 膠體過濾管柱層析…………………………………….…… 16
3.3 蔗糖合成酶活性測定法………………………..………….…… 17
3.3.1 蔗糖分解方向之活性測定…………………………….…… 17
3.3.1.1 酵素耦合法……………………………...………….…… 17
3.3.1.2 還原糖定量法………………………………...…….…… 17
3.3.2 蔗糖合成方向之活性測定…………….………...…….…… 18
3.3.2.1 Anthrone 定量法……………………………...…….…… 18
3.4 蛋白質定量與電泳分析………………...…….……………..… 19


3.4.1 蛋白質定量…………………...……...…….……………..… 19
3.4.2 蛋白質電泳…………………...……...…….……………..… 19
3.4.3 西方轉印……………………...……...…….……………..… 20
3.4.4 免疫呈色法…………………...……...…….……………..… 20
3.4.5 分子量測定…………………...……...…….……………..… 21
3.4.6 酵素動力學分析試驗...……………...…….……………..… 21
3.4.7 分解方向活化能測定...……………...…….……………..… 21
3.4.8 分解方向反應最適 pH 值測定…...…….……………....… 22
3.5 水稻蔗糖合成酶三級結構模擬………...…….……………..… 22
第三章 結果…...…….………………………………………….....… 23
第一節 RSuS3 突變株之建構………………………...…….........… 23
第二節 野生型與突變型 RSuS3 在 P. pastoris 中之表現與活性
分析…………..........................................................… 23
2.1 小量重組 RSuS3 之表現……...............................................… 23
2.2 重組 RSuS3 蛋白質的大量表現與純化…….......................… 24
2.2.1 野生型重組 RSuS3 的表現與純化..................................… 24
2.2.2 RSuS3(E678D) 突變株的表現與純化...............................… 25
2.2.3 RSuS3(E678Q) 突變株的表現與純化...............................… 25
2.2.4 RSuS3(E686D) 突變株的表現與純化...............................… 25


2.2.5 RSuS3(E686Q) 突變株的表現與純化...............................… 25
2.3 純化之野生型與突變型重組 RSuS3 之酵素活性與分子量
檢定.........................................................................................… 26
第三節 野生型重組 RSuS3 與 RSuS3(E686D) 突變株之酵素動
力學分析.............................................................................… 26
3.1 蔗糖分解方向之動力學分析...................................................… 26
第四節 野生型重組 RSuS3 與 RSuS3(E686D) 突變株其它性質
比較.....................................................................................… 27
4.1 反應溫度對酵素活性之影響………......................................… 27
4.2 pH 值對酵素活性之影響………………………………........… 27
第五節 水稻蔗糖合成酶三級結構模擬............................................... 28
第四章 討論.....................................................................................… 29
第五章 未來展望...............................................................................… 32
第一節 野生型重組 RSuS3 與 RSuS3(E686D) 合成方向動力學
分析及其它性質檢定.........................................................… 32
第二節 酵素活性區其它保守性胺基酸.........................................… 32
參考文獻.............................................................................................… 33
圖與表.................................................................................................… 38
dc.language.isozh-TW
dc.subject蔗糖合成&#37238zh_TW
dc.subject糖基轉移&#37238zh_TW
dc.subjectE-X7-E motifzh_TW
dc.subject定位點突變法zh_TW
dc.subject酵素動力學zh_TW
dc.subjectsucrose synthaseen
dc.subjectE-X7-E motifen
dc.subjectsite-directed mutagenesisen
dc.subjectglycosyltransferaseen
dc.subjectenzyme kineticen
dc.title水稻蔗糖合成酶中 E-X7-E motif 之功能探討zh_TW
dc.titleStudies on the function of the E-X7-E motif in rice sucrose synthaseen
dc.typeThesis
dc.date.schoolyear100-2
dc.description.degree碩士
dc.contributor.oralexamcommittee宋賢一,張珍田,楊健志,陳佩燁
dc.subject.keyword蔗糖合成&#37238,糖基轉移&#37238,E-X7-E motif,定位點突變法,酵素動力學,zh_TW
dc.subject.keywordsucrose synthase,glycosyltransferase,E-X7-E motif,site-directed mutagenesis,enzyme kinetic,en
dc.relation.page64
dc.rights.note未授權
dc.date.accepted2012-07-20
dc.contributor.author-college生命科學院zh_TW
dc.contributor.author-dept生化科技學系zh_TW
顯示於系所單位:生化科技學系

文件中的檔案:
檔案 大小格式 
ntu-101-1.pdf
  未授權公開取用
8.86 MBAdobe PDF
顯示文件簡單紀錄


系統中的文件,除了特別指名其著作權條款之外,均受到著作權保護,並且保留所有的權利。

社群連結
聯絡資訊
10617臺北市大安區羅斯福路四段1號
No.1 Sec.4, Roosevelt Rd., Taipei, Taiwan, R.O.C. 106
Tel: (02)33662353
Email: ntuetds@ntu.edu.tw
意見箱
相關連結
館藏目錄
國內圖書館整合查詢 MetaCat
臺大學術典藏 NTU Scholars
臺大圖書館數位典藏館
本站聲明
© NTU Library All Rights Reserved