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| DC 欄位 | 值 | 語言 |
|---|---|---|
| dc.contributor.advisor | 林乃君 | zh_TW |
| dc.contributor.advisor | Nai-Chun Lin | en |
| dc.contributor.author | 白宇傑 | zh_TW |
| dc.contributor.author | Yu-Jie Bai | en |
| dc.date.accessioned | 2026-02-26T16:38:36Z | - |
| dc.date.available | 2026-02-27 | - |
| dc.date.copyright | 2026-02-26 | - |
| dc.date.issued | 2026 | - |
| dc.date.submitted | 2026-02-23 | - |
| dc.identifier.citation | 何宜嬨、陳慧萍。2022。三大絕招抵禦氣候變遷 助農民「蔥」破逆境－農試所的青蔥栽培管理策略。豐年雜誌72: 40-45。
呂朝元、顏勝雄。2018。設施青蔥幼蔥夏季生產技術之建立。107 年科技計畫研究成果發表會論文輯。 李香誼。2025。青蔥台農選1號夏季也能穩定生產-兼具耐熱與細緻口感 生長勢強全年可栽培。豐年雜誌 75: 6-10。 邵柔涵。2022。戀香草莓組織培養苗生物健化有益細菌之研究。碩士論文。國立臺灣大學植物醫學碩士學位學程。臺北。臺灣。 張武男、黄鵬。1998。台灣蔥科蔬菜品種改良之研究。蔬菜育種技術研習會專刊73: 312-313。 張耀聰、陳昱初。2007。有益微生物在農作生產上的應用。高雄區農技報導83: 3-15。 許苑培。1999。青蔥栽培管理。桃園區農業專訊28: 22-25。 許苑培。2009。青蔥育苗技術。桃園區農業專訊69: 12。 許淼淼，林楨祐。2018。設施青蔥生產改進研究。產業現況及研究發展國際設施研討會論文專刊 214: 182-193。 陳任芳、楊大吉。2008。青蔥重要病蟲害種類與防治方法。花蓮區農業改良場專刊 68: 21-34。 陳任芳。2015。青蔥根蟎與軟腐病之綜合管理策略。花蓮區農業專訊，91：6-9。 黃晉興，林玫珠，林宗俊，蔡佳欣，張淑貞，江明耀。2022。蔥破逆境-氣候變遷下青蔥的病蟲害管理策略。農業試驗所技術服務季刊 131: 11-15。 黃晉興、袁琴雅。2022。台灣中彰雲地區青蔥炭疽捲葉病之病因探討。中華植物保護學會民國 111 年年會暨論文宣讀摘要集。 黃晉興、袁琴雅。2023a。青蔥炭疽捲葉病之介紹。農業試驗所技術服務季刊 134: 1-4。 黃晋興、袁琴雅。2023b。臺灣青蔥捲葉型炭疽病病害調查與病原菌鑑定。中華植物保護學會民國 112 年年會暨論文宣讀摘要集。 黃晋興、袁琴雅。2023c。青蔥捲葉型炭疽病發病的環境因子之探討。中華植物保護學會民國 112 年年會暨論文宣讀摘要集。 黃晋興、林玫珠、袁琴雅。2024。因應疫病與捲葉型炭疽病之青蔥作物整合管理技術初探。中華植物保護學會民國 113 年年會暨論文宣讀摘要集。 黃晋興、袁琴雅。2024。青蔥捲葉型炭疽病防治資材篩選。中華植物保護學會民國 113 年年會暨論文宣讀摘要集。 黃晋興、林玫珠。2025，七字妙用箴言夏秋青蔥好種 (種田肥水管藥材)。農業試驗所技術服務季刊 143: 11-15。 黃鵬。1995。蔥。臺灣農家要覽作物篇 (二)。297-298。 楊宏瑛。1994。青蔥栽培管理 (一)。花蓮區農業專訊 9: 8-10。 楊宏瑛。1995。青蔥新品種「蘭陽一號」之育成及特性。花蓮區農業改良場研究彙報 11: 69-87。 楊宏瑛。1998。青蔥採收後保鮮技術花蓮區農業改良場農技報導 44: 11-3。 楊宏瑛。2000。青蔥採收後鮮技術花蓮區農業專訊 31: 6-8。 楊宏瑛、黃鵬。2002。青蔥新品種「福蔥-蘭陽三號」之育成及特性。花蓮區農業改良場研究彙報 20: 33-44。 楊宏瑛。2005。蔥。臺灣農家要覽，增修訂三版。345-348。 楊素絲、陳吉村。2008。合理化施肥技術叢書-青蔥合理化施肥手冊。 楊素絲、陳吉村。2010。青蔥合理化施肥技術。臺中區農業改良場特刊 100: 145-148。 楊素絲。2014a。青蔥採後處理技術。花蓮區農業專訊 87: 9-11。 楊素絲。2014b。宜蘭地區青蔥有機栽培簡介。花蓮區農業專訊 89: 18-20。 楊素絲，陳任芳，徐仲禹，蔡依真。2014。青蔥健康管理生產體系之研究。102 年度重點作物健康管理生產體系及關鍵技術之研發成果研討會論文集。 楊秀珠。2001。作物生產整合管理。農政與農情 110: 76-79。 農業部。2024。農業統計年報 (113年)。 農業部。2024。農業統計要覽 (113年)。 趙佳鴻、王照仁、許晴情、林大淵、于逸知。2024。夏季青蔥炭疽捲葉病防治之因應策略。臺中區農情月刊 97: 3。 蔡依真、林立、劉亭君、邱智迦、王俊翔、謝文棟、邱淑媛、江金龍、劉皇琴、 蕭健棋。2021。宜蘭三星青蔥異地保種病蟲害管理。花蓮區農業專訊 118: 2-5。 蔡依真。2023。青蔥之作物有害生物整合管理 (IPM) 操作指引。 劉興榮，楊素絲。2009。青蔥栽培管理手冊。行政院農業委員會花蓮區農業改良場專刊 68。 蘇炳鐸。2011。青蔥有機栽培。臺東區農技報導 4。 Adeleke, B. S., Babalola, O. O. and Glick, B. R. 2021. Plant growth-promoting root-colonizing bacterial endophytes. Rhizosphere. 20: 100433. Adeleke, B. S., Ayangbenro, A. S. and Babalola, O. O. 2022. Effect of endophytic bacterium, Stenotrophomonas maltophilia JVB5 on sunflowers. Plant Protection Science. 58: 3. Aguilar-Paredes, A., Valdés, G. and Nuti, M. 2020. Ecosystem functions of microbial consortia in sustainable agriculture. Agronomy. 10: 1902. Akköprü, A., Akat, Ş., Özaktan, H., Gül, A. and Akbaba, M. 2021. The long-term colonization dynamics of endophytic bacteria in cucumber plants, and their effects on yield, fruit quality and Angular Leaf Spot Disease. Scientia Horticulturae. 282: 110005. Alexander, A., Singh, V. K., Mishra, A. and Jha, B. 2019. Plant growth promoting rhizobacterium Stenotrophomonas maltophilia BJ01 augments endurance against N2 starvation by modulating physiology and biochemical activities of Arachis hypogea. PLoS One. 14: e0222405. Ali, S., Charles, T. C. and Glick, B. R. 2014. Amelioration of high salinity stress damage by plant growth-promoting bacterial endophytes that contain ACC deaminase. Plant Physiology and Biochemistry. 80: 160-167. Ali, Md. A., Ahmed, T., Ibrahim, E., Rizwan, M., Chong, K. P. and Yong, J. W. H. 2024. A review on mechanisms and prospects of endophytic bacteria in biocontrol of plant pathogenic fungi and their plant growth-promoting activities. Heliyon. 10: e31573. Al-Hussini, H. S., Al-Rawahi, A. Y., Al-Marhoon, A. A., Al-Abri, S. A., Al-Mahmooli, I. H., Al-Sadi, A. M. and Velazhahan, R. 2019. Biological control of damping-off of tomato caused by Pythium aphanidermatum by using native antagonistic rhizobacteria isolated from Omani soil. Journal of Plant Pathology. 101: 315-322. Ameen, M., Mahmood, A., Sahkoor, A., Zia, M. A. and Ullah, M. S. 2024. The role of endophytes to combat abiotic stress in plants. Plant Stress. 12: 100435. Arguelles-Arias, A., Ongena, M., Halimi, B., Lara, Y., Brans, A., Joris, B. and Fickers, P. 2009. Bacillus amyloliquefaciens GA1 as a source of potent antibiotics and other secondary metabolites for biocontrol of plant pathogens. Microbial Cell Factories. 8: 63. Arora, N. K., Mishra, J., Singh, P. and Fatima, T. 2024. Salt‐tolerant plant growth‐promoting Pseudomonas atacamensis KSS‐6 in combination with organic manure enhances rice yield, improves nutrient content and soil properties under salinity stress. Journal of Basic Microbiology. 64: 2300767. Bacon, C. W. and White Jr, J. F. 2016. Functions, mechanisms and regulation of endophytic and epiphytic microbial communities of plants. Symbiosis. 68: 87-98. Bajaj, R., Hu, W., Huang, Y., Chen, S., Prasad, R., Varma, A. and Bushley, K. E. 2015. The beneficial root endophyte Piriformospora indica reduces egg density of the soybean cyst nematode. Biological Control. 90: 193-199. Barbaccia, P., Gaglio, R., Dazzi, C., Miceli, C., Bella, P., Lo Papa, G. and Settanni, L. 2022. Plant growth-promoting activities of bacteria isolated from an anthropogenic soil located in Agrigento province. Microorganisms. 10: 2167. Bashizi, T., Kim, M. J., Lim, K., Lee, G., Tagele, S. and Shin, J. H. 2025. Application of a synthetic microbial community to enhance pepper resistance against Phytophthora capsici. Plants. 14: 1625. Becker, J., Eisenhauer, N., Scheu, S. and Jousset, A. 2012. Increasing antagonistic interactions cause bacterial communities to collapse at high diversity. Ecology Letters. 15: 468-474. Berendsen, R. L., Vismans, G., Yu, K., Song, Y., de Jonge, R., Burgman, W. P., Burmølle, M., Herschend, J., Bakker, P. A. H. M. and Pieterse, C. M. J. 2018. Disease-induced assemblage of a plant-beneficial bacterial consortium. The ISME Journal. 12: 1496-1507. Berg, G. and Hallmann, J. 2006. Control of plant pathogenic fungi with bacterial endophytes. In B. J. E. Schulz, C. J. C. Boyle, and T. N. Sieber. Microbial Root Endophytes. 53-69. Berg, G., Köberl, M., Rybakova, D., Müller, H., Grosch, R. and Smalla, K. 2017. Plant microbial diversity is suggested as the key to future biocontrol and health trends. FEMS Microbiology Ecology. 93: fix050. Berry, D. and Widder, S. 2014. Deciphering microbial interactions and detecting keystone species with co-occurrence networks. Frontiers in Microbiology. 5: 219. Bizjak-Johansson, T., Braunroth, A., Gratz, R. and Nordin, A. 2025. Inoculation with in vitro promising plant growth-promoting bacteria isolated from nitrogen-limited boreal forest did not translate to in vivo growth promotion of agricultural plants. Biology and Fertility of Soils. 61: 925-940. Blaxter, M., Mann, J., Chapman, T., Thomas, F., Whitton, C., Floyd, R. and Abebe, E. 2005. Defining operational taxonomic units using DNA barcode data. Philosophical Transactions of the Royal Society B: Biological Sciences. 360: 1935-1943. Bodenhausen, N., Bortfeld-Miller, M., Ackermann, M. and Vorholt, J. A. 2014. A synthetic community approach reveals plant genotypes affecting the phyllosphere microbiota. PLoS Genetics. 10: e1004283. Boller, T. and Felix, G. 2009. A renaissance of elicitors: perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors. Annual Review of Plant Biology. 60: 379-406. Bouchard-Rochette, M., Machrafi, Y., Cossus, L., Nguyen, T. T. A., Antoun, H., Droit, A. and Tweddell, R. J. 2022. Bacillus pumilus PTB180 and Bacillus subtilis PTB185: Production of lipopeptides, antifungal activity, and biocontrol ability against Botrytis cinerea. Biological Control. 170: 104925. Brooke, J. S. 2012. Stenotrophomonas maltophilia: an emerging global opportunistic pathogen. Clinical Microbiology Reviews. 25: 2-41. Bulgarelli, D., Schlaeppi, K., Spaepen, S., van Themaat, E. V. L. and Schulze-Lefert, P. 2013. Structure and functions of the bacterial microbiota of plants. Annual Review of Plant Biology. 64: 807-838. Busby, P. E., Soman, C., Wagner, M. R., Friesen, M. L., Kremer, J., Bennett, A., Morsy, M., Eisen, J. A., Leach, J. E. and Dangl, J. L. 2017. Research priorities for harnessing plant microbiomes in sustainable agriculture. PLoS Biology. 15: e2001793. Bziuk, N., Maccario, L., Sørensen, S. J., Schikora, A. and Smalla, K. 2022. Barley rhizosphere microbiome transplantation - A strategy to decrease susceptibility of barley grown in soils with low microbial diversity to powdery mildew. Frontiers in Microbiology. 13: 830905. Callahan, B. J., McMurdie, P. J. and Holmes, S. P. 2017. Exact sequence variants should replace operational taxonomic units in marker-gene data analysis. The ISME Journal. 11: 2639-2643. Caruso, V., Song, X., Asquith, M. and Karstens, L. 2019. Performance of microbiome sequence inference methods in environments with varying biomass. mSystems. 4: 10-1128. Chen, L. and Liu, Y. 2024. The function of root exudates in the root colonization by beneficial soil rhizobacteria. Biology. 13: 95. Chen, Z., Wang, Z. and Xu, W. 2024a. Bacillus velezensis WB induces systemic resistance in watermelon against Fusarium wilt. Pest Management Science. 80: 1423-1434. Chen, X., Zhang, Y., Chao, S., Song, L., Wu, G., Sun, Y., Chen, Y. and Lv, B. 2024b. Biocontrol potential of endophytic Bacillus subtilis A9 against rot disease of Morchella esculenta. Frontiers in Microbiology. 15. 1388669. Chhabra, S., Dowling, D.N. 2017. Endophyte-promoted nutrient acquisition: phosphorus and iron. In: Doty, S. (Eds.). Functional importance of the plant microbiome. Springer. 21-42. Chi, F., Shen, S.-H., Cheng, H.-P., Jing, Y.-X., Yanni, Y. G. and Dazzo, F. B. 2005. Ascending migration of endophytic rhizobia, from roots to leaves, inside rice plants and assessment of benefits to rice growth physiology. Applied and Environmental Microbiology. 71: 7271-7278. Chorost, M. S., Smith, N. C., Hutter, J. N., Ong, A. C., Stam, J. A., McGann, P. T., Hinkle, M. K., Schaecher, K. E. and Kamau, E. 2018. Bacteraemia due to Microbacterium paraoxydans in a patient with chronic kidney disease, refractory hypertension and sarcoidosis. JMM Case Reports. 5: e005169. Chretien, R. L., Burrell, E., Evans, M. R., Lowman, S. and Mei, C. 2024. ACC (1-aminocyclopropane-1-carboxylic acid) deaminase producing endophytic bacteria improve hydroponically grown lettuce in the greenhouse during summer season. Scientia Horticulturae. 327: 112862. Collinge, D. B., Jensen, B. and Jørgensen, H. J. 2022. Fungal endophytes in plants and their relationship to plant disease. Current Opinion in Microbiology. 69: 102177-102177. Compant, S., Clément, C. and Sessitsch, A. 2010. Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization. Soil Biology and Biochemistry. 42: 669-678. Compant, S., Duffy, B., Nowak, J., Clément, C. and Barka, E. A. 2005. Use of plant growth-promoting bacteria for biocontrol of plant diseases: principles, mechanisms of action, and future prospects. Applied and Environmental Microbiology. 71: 4951-4959. Compant, S., Samad, A., Faist, H. and Sessitsch, A. 2019. A review on the plant microbiome: ecology, functions, and emerging trends in microbial application. Journal of Advanced Research. 19: 29-37. Contreras-Salgado, E. A., Sánchez-Morán, A. G., Rodríguez-Preciado, S. Y., Sifuentes-Franco, S., Rodríguez-Rodríguez, R., Macías-Barragán, J. and Díaz-Zaragoza, M. 2024. Multifaceted applications of synthetic microbial communities: advances in biomedicine, bioremediation, and industry. Microbiology Research. 15: 1709-1727. Coombs, J. T. and Franco, C. M. 2003. Isolation and identification of actinobacteria from surface-sterilized wheat roots. Applied and Environmental Microbiology. 6: 5603-5608. Cordovez, V., Carrion, V. J., Etalo, D. W., Mumm, R., Zhu, H., Van Wezel, G. P. and Raaijmakers, J. M. 2015. Diversity and functions of volatile organic compounds produced by Streptomyces from a disease-suppressive soil. Frontiers in Microbiology. 6: 1081. Coyte, K. Z., Schluter, J. and Foster, K. R. 2015. The ecology of the microbiome: networks, competition, and stability. Science. 350: 663-666. Culp, E. J. and Goodman, A. L. 2023. Cross-feeding in the gut microbiome: ecology and mechanisms. Cell Host & Microbe. 31: 485-499. Dinglasan, E., Periyannan, S. and Hickey, L. T. 2022. Harnessing adult-plant resistance genes to deploy durable disease resistance in crops. Essays in biochemistry. 66: 571-580. Doty, S.L. 2011. Nitrogen-fixing endophytic bacteria for improved plant growth. In: Maheshwari, D. (Eds.). Bacteria in agrobiology: Plant growth responses. Springer. 183-199. D'Souza, G., Shitut, S., Preussger, D., Yousif, G., Waschina, S. and Kost, C. 2018. Ecology and evolution of metabolic cross-feeding interactions in bacteria. Natural product reports. 35: 455-488. Dunlap, C. A. 2019. Taxonomy of registered Bacillus spp. strains used as plant pathogen antagonists. Biological Control. 134: 82-86. Durán, P., Thiergart, T., Garrido-Oter, R., Agler, M., Kemen, E., Schulze-Lefert, P. and Hacquard, S. 2018. Microbial interkingdom interactions in roots promote Arabidopsis survival. Cell. 175: 973-983. Edwards Molina, J. P., Paul, P. A., Amorim, L., Silva, L. H. C. P., Siqueri, F. V., Borges, E. P., Campos, H. D., Nunes Junior, J., Meyer, M. C., Martins, M. C., Balardin, R. S., Carlin, V. J., Grigolli, J. F. J., Belufi, L. M. de R. and Godoy, C. V. 2019. Meta-analysis of fungicide efficacy on soybean target spot and cost-benefit assessment. Plant Pathology. 68: 94-106. El-Saadony, M. T., Saad, A. M., Soliman, S. M., Salem, H. M., Ahmed, A. I., Mahmood, M., El-Tahan, A. M., Ebrahim, A. A. M., Abd El-Mageed, T. A., Negm, S. H., Selim, S., Babalghith, A. O., Elrys, A. S., El-Tarabily, K. A. and AbuQamar, S. F. 2022. Plant growth-promoting microorganisms as biocontrol agents of plant diseases: Mechanisms, challenges and future perspectives. Frontiers in Plant Science. 13: 923880. Etesami, H. 2025. The dual nature of plant growth-promoting bacteria: Benefits, risks, and pathways to sustainable deployment. Current Research in Microbial Sciences. 100421. Fadiji, A. E. and Babalola, O. O. 2020. Elucidating mechanisms of endophytes used in plant protection and other bioactivities with multifunctional prospects. Frontiers in Bioengineering and Biotechnology. 8: 467. Fadiji, A. E., Adeniji, A., Lanrewaju, A. A., Adedayo, A. A., Chukwuneme, C. F., Nwachukwu, B. C., Aderibigbe, J. and Omomowo, I. O. 2025. Key challenges in plant microbiome research in the next decade. Microorganisms. 13: 2546. Fan, B., Wang, C., Song, X., Ding, X., Wu, L., Wu, H., Gao, X. and Borriss, R. 2018. Bacillus velezensis FZB42 in 2018: The gram-positive model strain for plant growth promotion and biocontrol. Frontiers in Microbiology. 9: 2491. Feng, H., Fu, R., Hou, X., Lv, Y., Zhang, N., Liu, Y., Xu, Z., Miao, Y., Krell, T., Shen, Q. and Zhang, R. 2021. Chemotaxis of beneficial rhizobacteria to root exudates: The first step towards root-microbe rhizosphere interactions. International Journal of Molecular Sciences. 22: 6655. Fincheira, P. and Quiroz, A. 2018. Microbial volatiles as plant growth inducers. Microbiological Research. 208: 63-75. Finkel, O. M., Castrillo, G., Paredes, S. H., González, I. S. and Dangl, J. L. 2017. Understanding and exploiting plant beneficial microbes. Current Opinion in Plant Biology. 38: 155-163. Fira, D., Dimkić, I., Berić, T., Lozo, J., and Stanković, S. 2018. Biological control of plant pathogens by Bacillus species. Journal of Biotechnology. 285: 44-55. Fitzpatrick, C. R., Copeland, J., Wang, P. W., Guttman, D. S., Kotanen, P. M. and Johnson, M. T. 2018. Assembly and ecological function of the root microbiome across angiosperm plant species. Proceedings of the National Academy of Sciences. 115: e1157-e1165. Fritts, R. K., McCully, A. L. and McKinlay, J. B. 2021. Extracellular metabolism sets the table for microbial cross-feeding. Microbiology and Molecular Biology Reviews. 85: 10-1128. Fujiwara, K., Iida, Y., Someya, N., Takano, M., Ohnishi, J., Terami, F. and Shinohara, M. 2016. Emergence of antagonism against the pathogenic fungus Fusarium oxysporum by interplay among non‐antagonistic bacteria in a hydroponics using multiple parallel mineralization. Journal of Phytopathology. 164: 853-862. Gao, X., Gong, Y., Huo, Y., Han, Q., Kang, Z. and Huang, L. 2015. Endophytic Bacillus subtilis strain E1R‐J is a promising biocontrol agent for wheat powdery mildew. BioMed Research International. 2015: 462645. Glick, B. R. 2012. Plant growth‐promoting bacteria: mechanisms and applications. Scientifica. 2012: 963401. Glick B. R. 2014. Bacteria with ACC deaminase can promote plant growth and help to feed the world. Microbiological Research. 169: 30-39. Goldford, J. E., Lu, N., Bajić, D., Estrela, S., Tikhonov, M., Sanchez-Gorostiaga, A., Segrè, D., Mehta, P. and Sanchez, A. 2018. Emergent simplicity in microbial community assembly. Science. 361: 469-474. Großkopf, T. and Soyer, O. S. 2014. Synthetic microbial communities. Current Opinion in Microbiology. 18: 72-77. Gu, Y., Yan, W., Chen, Y., Liu, S., Sun, L., Zhang, Z., Lei, P., Wang, R., Li, S., Banerjee, S., Friman, V.-P. and Xu, H. 2025. Plant growth-promotion triggered by extracellular polymer is associated with facilitation of bacterial cross-feeding networks of the rhizosphere. The ISME Journal. 19: wraf040. Guo, S., Pan, R., Zhang, Y., Gu, Q., Shen, Q., Yang, J., Huang, L., Shen, Z. and Li, R. 2025. Plant-microbe interactions influence plant performance via boosting beneficial root-endophytic bacteria. Environmental Microbiome. 20: 18. Haas, D. and Défago, G. 2005. Biological control of soil-borne pathogens by fluorescent pseudomonads. Nature Reviews Microbiology. 3: 307-319. Hallmann, J., Quadt-Hallmann, A., Mahaffee, W. F. and Kloepper, J. W. 1997. Bacterial endophytes in agricultural crops. Canadian Journal of Microbiology. 43: 895-914. Hardoim, P. R., van Overbeek, L. S., Berg, G., Pirttilä, A. M., Compant, S., Campisano, A., Döring, M. and Sessitsch, A. 2015. The hidden world within plants: Ecological and evolutionary considerations for defining functioning of microbial endophytes. Microbiology and Molecular Biology Reviews. 79: 293-320. Hassani, M. A., Durán, P. and Hacquard, S. 2018. Microbial interactions within the plant holobiont. Microbiome. 6: 58. He, Z., Webster, S. and He, S. Y. 2022. Growth-defense trade-offs in plants. Current Biology. 32: R634-R639. Herrera Paredes, S., Gao, T., Law, T. F., Finkel, O. M., Mucyn, T., Teixeira, P. J. P. L., Salas González, I., Feltcher, M. E., Powers, M. J., Shank, E. A., Jones, C. D., Jojic, V., Dangl, J. L. and Castrillo, G. 2018. Design of synthetic bacterial communities for predictable plant phenotypes. PLoS Biology. 16: e2003962. Hibbing, M. E., Fuqua, C., Parsek, M. R. and Peterson, S. B. 2010. Bacterial competition: surviving and thriving in the microbial jungle. Nature Reviews Microbiology. 8: 15-25. Hitch, T. C. A., Bosch, J., Bolsega, S., Deschamps, C., Etienne-Mesmin, L., Treichel, N., Blanquet-Diot, S., Ocvirk, S., Basic, M. and Clavel, T. 2025. Function-based selection of synthetic communities enables mechanistic microbiome studies. The ISME Journal. 19:1. Honma, M. and Shimomura, T. 1978. Metabolism of 1-aminocyclopropane-1-carboxylic acid. Agricultural and Biological Chemistry. 42: 1825-1831. Hossain, T. J. 2024. Genome analysis of Pantoea dispersa PGPR-24 reveals key genetic pathways for plant growth promotion, root colonization and nutrient mobilization. Hui, C., Jiang, H., Liu, B., Wei, R., Zhang, Y., Zhang, Q., Liang, Y. and Zhao, Y. 2020. Chitin degradation and the temporary response of bacterial chitinolytic communities to chitin amendment in soil under different fertilization regimes. Science of The Total Environment. 705: 136003. Iniguez, A. L., Dong, Y. and Triplett, E. W. 2004. Nitrogen fixation in wheat provided by Klebsiella pneumoniae 342. Molecular Plant-Microbe Interactions. 17: 1078-1085. Ismail, M. A., Amin, M. A., Eid, A. M., Hassan, S. E.-D., Mahgoub, H. A. M., Lashin, I., Abdelwahab, A. T., Azab, E., Gobouri, A. A., Elkelish, A. and Fouda, A. 2021. Comparative study between exogenously applied plant growth hormones versus metabolites of microbial endophytes as plant growth-promoting for Phaseolus vulgaris L. Cells. 10: 1059. Jasim, B., Joseph, A. A., John, C. J., Mathew, J. and Radhakrishnan, E. K. 2014. Isolation and characterization of plant growth promoting endophytic bacteria from the rhizome of Zingiber officinale. 3 Biotech, 4: 197-204. Kanchiswamy, C. N., Malnoy, M. and Maffei, M. E. 2015. Bioprospecting bacterial and fungal volatiles for sustainable agriculture. Trends in Plant Science. 20: 206-211. Kandel, S., Joubert, P. and Doty, S. 2017. Bacterial endophyte colonization and distribution within plants. Microorganisms. 5: 77. Kaur, G., Kaur, J., Dadhich, S. and Cameotra, S. 2011. Phosphate solubilizing bacteria Microbacterium paraoxydans isolated from the rhizospheric system of wheat (Triticum aestivum). Transylvanian Review of Systematical and Ecological Research. 12: 157-168. Kayat, F., Mohammed, A. and Ibrahim, A. M. 2021. Spring onion (Allium fistulosum L.) breeding strategies. In advances in plant breeding strategies: Vegetable Crops. 135-182. Kejela, T. 2024. Phytohormone-producing rhizobacteria and their role in plant growth. In: Ali, B. and Iqbal, J. (Eds.). New insights into phytohormones. IntechOpen. 55-77. Kim, S. H., Yoon, J., Han, J., Seo, Y., Kang, B.-H., Lee, J. and Ochar, K. 2023. Green onion (Allium fistulosum): An aromatic vegetable crop esteemed for food, nutritional and therapeutic significance. Foods. 12: 4503. Knight, R., Vrbanac, A., Taylor, B. C., Aksenov, A., Callewaert, C., Debelius, J., Gonzalez, A., Kosciolek, T., McCall, L.-I., McDonald, D., Melnik, A. V., Morton, J. T., Navas, J., Quinn, R. A., Sanders, J. G., Swafford, A. D., Thompson, L. R., Tripathi, A., Xu, Z. Z. and Dorrestein, P. C. 2018. Best practices for analysing microbiomes. Nature Reviews Microbiology. 16: 410-422. Kong, Z., Hart, M. and Liu, H. 2018. Paving the way from the lab to the field: using synthetic microbial consortia to produce high-quality crops. Frontiers in Plant Science. 9: 1467. Kwak, M.-J., Kong, H. G., Choi, K., Kwon, S.-K., Song, J. Y., Lee, J., Lee, P. A., Choi, S. Y., Seo, M., Lee, H. J., Jung, E. J., Park, H., Roy, N., Kim, H., Lee, M. M., Rubin, E. M., Lee, S.-W. and Kim, J. F. 2018. Rhizosphere microbiome structure alters to enable wilt resistance in tomato. Nature Biotechnology. 36: 1100-1109. Lane, D.J. 1991. 16S/23S rRNA Sequencing. In: Stackebrandt, E. and Goodfellow, M. (Eds.). Nucleic acid techniques in bacterial systematic. John Wiley and Sons. 115-175. Lane, D. J., Pace, B., Olsen, G. J., Stahl, D. A., Sogin, M. L. and Pace, N. R. 1985. Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proceedings of the National Academy of Sciences. 82: 6955-6959.9. Langenheder, S. and Székely, A. J. 2011. Species sorting and neutral processes are both important during the initial assembly of bacterial communities. The ISME Journal. 5: 1086-1094. Lee, J. A., Baugh, A. C., Shevalier, N. J., Strand, B., Stolyar, S. and Marx, C. J. 2021. Cross-feeding of a toxic metabolite in a synthetic lignocellulose-degrading microbial community. Microorganisms. 9: 321. Leeman, M., Van Pelt, J. A., Den Ouden, F. M., Heinsbroek, M., Bakker, P. A. H. M. and Schippers, B. 1995. Induction of systemic resistance against Fusarium wilt of radish by lipopolysaccharides of Pseudomonas fluorescens. Phytopathology. 85: 1021-1027. Li, Z., Xiong, K., Wen, W., Li, L. and Xu, D. 2023. Functional endophytes regulating plant secondary metabolism: current status, prospects and applications. International Journal of Molecular Sciences. 24: 1153. Link, H. F. 1809. Observationes in ordines plantarum naturales. Dissertatio. 1: 1-33. Liu, H., Carvalhais, L. C., Crawford, M., Singh, E., Dennis, P. G., Pieterse, C. M. J. and Schenk, P. M. 2017. Inner plant values: Diversity, colonization and benefits from endophytic bacteria. Frontiers in Microbiology. 8: 2552. Liu, X., Mei, S. and Salles, J. F. 2023. Inoculated microbial consortia perform better than single strains in living soil: A meta-analysis. Applied Soil Ecology. 190: 105011. Liu, Y. X., Qin, Y. and Bai, Y. 2019. Reductionist synthetic community approaches in root microbiome research. Current Opinion in Microbiology. 49: 97-10. Lugtenberg, B. and Kamilova, F. 2009. Plant-growth-promoting rhizobacteria. Annual Review of Microbiology. 63: 541-556. Mageshwaran, V., Gupta, R., Singh, S., Sahu, P. K., Singh, U. B., Chakdar, H., Bagul, S. Y., Paul, S. and Singh, H. V. 2022. Endophytic Bacillus subtilis antagonize soil-borne fungal pathogens and suppress wilt complex disease in chickpea plants (Cicer arietinum L.). Frontiers in Microbiology. 13: 994847. Malik, S. S., Sudalaimuthuasari, N., Kundu, B., AlMaskari, R. S. and Mundra, S. 2022. Contrasting genome patterns of two Pseudomonas strains isolated from the date palm rhizosphere to assess survival in a hot arid environment. World Journal of Microbiology and Biotechnology. 38: 207. Mametja, N. M., Ramadwa, T. E., Managa, M. and Masebe, T. M. 2025. Recent advances and developments in bacterial endophyte identification and application: A 20-year landscape review. Plants. 14: 2506. Mandal, D., Aghababaei, M., Das, S. K., Majumder, S., Chatterjee, D. and Basu, A. 2022. Isolation and identification of arsenic hyper-tolerant bacterium with potential plant growth promoting properties from soil. Minerals. 12: 1452. Mandey, J. S., Sompie, M., Pontoh, C. J., Rarumangkay, J. and Wolayan, F. R. 2022. Nutrients and phytochemicals of Welsh onion (Allium fistulosum L.) and their importance in nutrition of poultry in the future-a review. Scientific Papers. Series D. Animal Science. 65:1. Marín, O., González, B. and Poupin, M. J. 2021. From microbial dynamics to functionality in the rhizosphere: a systematic review of the opportunities with synthetic microbial communities. Frontiers in Plant Science. 12: 650609. Martins, S. J., Pasche, J., Silva, H. A. O., Selten, G., Savastano, N., Abreu, L. M., Bais, H. P., Garrett, K. A., Kraisitudomsook, N., Pieterse, C. M. J. and Cernava, T. 2023. The use of synthetic microbial communities to improve plant health. Phytopathology. 113: 1369-1379. Maslennikova, V. S., Tsvetkova, V. P., Shelikhova, E. V., Selyuk, M. P., Alikina, T. Y., Kabilov, M. R. and Dubovskiy, I. M. 2023. Bacillus subtilis and Bacillus amyloliquefaciens mix suppresses rhizoctonia disease and improves rhizosphere microbiome, growth and yield of potato (Solanum tuberosum L.). Journal of Fungi. 9: 1142. Mauch-Mani, B., Baccelli, I., Luna, E. and Flors, V. 2017. Defense priming: an adaptive part of induced resistance. Annual Review of Plant Biology. 68: 485-512. Medison, R. G., Tan, L., Medison, M. B. and Chiwina, K. E. 2022. Use of beneficial bacterial endophytes: A practical strategy to achieve sustainable agriculture. AIMS Microbiology. 8: 624. Mehnaz, S., Kowalik, T., Reynolds, B. and Lazarovits, G. 2010. Growth promoting effects of corn (Zea mays) bacterial isolates under greenhouse and field conditions. Soil Biology and Biochemistry. 42: 1848-1856. Mendes, R., Kruijt, M., de Bruijn, I., Dekkers, E., van der Voort, M., Schneider, J. H. M., Piceno, Y. M., DeSantis, T. Z., Andersen, G. L., Bakker, P. A. H. M. and Raaijmakers, J. M. 2011. Deciphering the rhizosphere microbiome for disease-suppressive bacteria. Science. 332: 1097-1100. Meng, X., Cai, H., Luo, Y., Zhao, X., Fu, Y., Zou, L., Zhou, Y. and Tu, M. 2024. Biocontrol potential of endophytic Bacillus velezensis LSR7 against rubber red root rot disease. Journal of Fungi. 10: 849. Mercado-Blanco, J. and JJ Lugtenberg, B. 2014. Biotechnological applications of bacterial endophytes. Current Biotechnology. 3: 60-75. Mishra, S. and Arora, N. K. 2012. Evaluation of rhizospheric Pseudomonas and Bacillus as biocontrol tool for Xanthomonas campestris pv. campestris. World Journal of Microbiology and Biotechnology. 28: 693-702. Mohkam, M., Nezafat, N., Berenjian, A., Mobasher, M. A. and Ghasemi, Y. 2016. Identification of Bacillus probiotics isolated from soil rhizosphere using 16S rRNA, recA, rpoB gene sequencing and RAPD-PCR. Probiotics and Antimicrobial Proteins. 8: 8-18. Morales-Cedeño, L. R., del Carmen Orozco-Mosqueda, M., Loeza-Lara, P. D., Parra-Cota, F. I., de Los Santos-Villalobos, S. and Santoyo, G. 2021. Plant growth-promoting bacterial endophytes as biocontrol agents of pre-and post-harvest diseases: Fundamentals, methods of application and future perspectives. Microbiological Research. 242: 126612. Morelli, M., Bahar, O., Papadopoulou, K. K., Hopkins, D. L. and Obradović, A. 2020. Role of endophytes in plant health and defense against pathogens. Frontiers in Plant Science. 11: 1312. Mori, A. S., Isbell, F. and Seidl, R. 2018. β-diversity, community assembly, and ecosystem functioning. Trends in Ecology and Evolution. 33: 549-564. Mulet, M., Bennasar, A., Lalucat, J. and García-Valdés, E. 2009. An rpoD-based PCR procedure for the identification of Pseudomonas species and for their detection in environmental samples. Molecular and Cellular Probes. 23: 140-147. Murillo-Roos, M., Abdullah, H. S. M., Debbar, M., Ueberschaar, N. and Agler, M. T. 2022. Cross-feeding niches among commensal leaf bacteria are shaped by the interaction of strain-level diversity and resource availability. The ISME Journal. 16: 2280-2289. Nan, J., Jiehua, Q., Dagang, T., Huanbin, S., Zhiquan, L., Hui, W., Shuwei, X., Huizhe, C., Meng, W. and Yanjun, K. 2025. Mixture of Bacillus amyloliquefaciens and Bacillus pumilus modulates community structures of rice rhizosphere soil to suppress rice seedling blight. Rice Science. 32: 118-130. Navarro Llorens, J. M., Tormo, A. and Martínez-García, E. 2010. Stationary phase in gram-negative bacteria. FEMS microbiology reviews. 34: 476-495. Negi, R., Sharma, B., Kumar, S., Chaubey, K. K., Kaur, T., Devi, R., Yadav, A., Kour, D. and Yadav, A. N. 2024. Plant endophytes: unveiling hidden applications toward agro-environment sustainability. Folia Microbiologica. 69: 181-206. Nikoloudaki, O., Aheto, F., Di Cagno, R. and Gobbetti, M. 2024. Synthetic microbial communities: A gateway to understanding resistance, resilience, and functionality in spontaneously fermented food microbiomes. Food Research International. 192: 114780. Nimbulkar, P., Gupta, G., Virkhare, U., Althubiani, A. S., Dutta, A. and Kher, D. 2025. Bacterial endophytes and their secondary metabolites: mechanisms of biosynthesis and applications in sustainable agriculture. Journal of Umm Al-Qura University for Applied Sciences. 1-13. Niu, B., Paulson, J. N., Zheng, X. and Kolter, R. 2017. Simplified and representative bacterial community of maize roots. Proceedings of the National Academy of Sciences. 11: e2450-e2459. Nosheen, S., Ajmal, I. and Song, Y. 2021. Microbes as biofertilizers, a potential approach for sustainable crop production. Sustainability. 13: 1868. Ojiambo, P. S., Paul, P. A. and Holmes, G. J. 2010. A quantitative review of fungicide efficacy for managing downy mildew in cucurbits. Phytopathology. 100: 1066-1076. Oteino, N., Lally, R. D., Kiwanuka, S., Lloyd, A., Ryan, D., Germaine, K. J. and Dowling, D. N. 2015. Plant growth promotion induced by phosphate solubilizing endophytic Pseudomonas isolates. Frontiers in Microbiology. 6: 745-745. Padula, G., Xia, X. and Hołubowicz, R. 2022. Welsh onion (Allium fistulosum L.) seed physiology, breeding, production and trade. Plants. 11: 343. Pande, S., Merker, H., Bohl, K., Reichelt, M., Schuster, S., de Figueiredo, L. F., Kaleta, C. and Kost, C. 2014. Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria. The ISME Journal. 8: 953-962. Panditrao, M. and Panditrao, M. 2018. Pantoea dispersa: is it the next emerging “monster” in our intensive care units? A case report and review of literature. Anesthesia Essays and Researches. 12: 963-966. Petrini, O. 1991. Fungal endophytes of tree leaves. In: Andrews, J.H. and Hirano, S.S. (Eds.). Microbial ecology of leaves. Springer-Verlag. 179-197. Pieterse, C. M., Van der Does, D., Zamioudis, C., Leon-Reyes, A. and Van Wees, S. C. 2012. Hormonal modulation of plant immunity. Annual Review of Cell and Developmental Biology. 28: 489-521. Pieterse, C. M., Zamioudis, C., Berendsen, R. L., Weller, D. M., Van Wees, S. C. and Bakker, P. A. 2014. Induced systemic resistance by beneficial microbes. Annual Review of Phytopathology. 52: 347-375. Pontrelli, S., Szabo, R., Pollak, S., Schwartzman, J., Ledezma-Tejeida, D., Cordero, O. X. and Sauer, U. 2022. Metabolic cross-feeding structures the assembly of polysaccharide degrading communities. Science advances. 8: eabk3076. Prasad, M., Srinivasan, R., Chaudhary, M., Mahawer, S. K. and Jat, L. K. 2020. Endophytic bacteria: Role in sustainable agriculture. In: Kumar, A. and Singh, V. K. (Eds.). Microbial endophytes. Woodhead Publishing. 76-60. Quince, C., Walker, A. W., Simpson, J. T., Loman, N. J. and Segata, N. 2017. Shotgun metagenomics, from sampling to analysis. Nature Biotechnology. 35: 833-844. Rana, K. L., Kour, D., Kaur, T., Devi, R., Yadav, A. N., Yadav, N., Dhaliwal, H. S. and Saxena, A. K. 2020. Endophytic microbes: biodiversity, plant growth-promoting mechanisms and potential applications for agricultural sustainability. Antonie van Leeuwenhoek. 113: 1075-1107. Reinhold-Hurek, B. and Hurek, T. 2011. Living inside plants: bacterial endophytes. Current Opinion in Plant Biology. 14: 435-443. Reinhold-Hurek, B., Maes, T., Gemmer, S., Van Montagu, M. and Hurek, T. 2006. endoglucanase is involved in infection of rice roots by the not-cellulose-metabolizing endophyte Azoarcus sp. strain BH72. Molecular Plant-Microbe Interaction. 19: 181-188. Reiter, B., Pfeifer, U., Schwab, H. and Sessitsch, A. 2002. Response of endophytic bacterial communities in potato plants to infection with Erwinia carotovora subsp. atroseptica. Applied and Environmental Microbiology. 68: 2261-2268. Rosenblueth, M. and Martínez-Romero, E. 2006. Bacterial endophytes and their interactions with hosts. Molecular Plant-Microbe Interactions. 19: 827-837. Roy, M., Kang, B., Yang, S., Choi, H. and Choi, K. 2024. Characterization of tomato seed endophytic bacteria as growth promoters and potential biocontrol agents. The Plant Pathology Journal. 40: 578. Ryan, R. P., Germaine, K., Franks, A., Ryan, D. J. and Dowling, D. N. 2008. Bacterial endophytes: recent developments and applications. FEMS Microbiology Letters. 278: 1-9. Saber, W. I., Ghoneem, K. M., Al-Askar, A. A., Rashad, Y. M., Ali, A. A. and Rashad, E. M. 2015. Chitinase production by Bacillus subtilis ATCC 11774 and its effect on biocontrol of Rhizoctonia diseases of potato. Acta Biologica Hungarica. 66: 436-448. Samonty, I., Hasan, M. Z., Hossain, M. R. and Mahamud, A. G. M. 2025. The PGPB paradox: A critical review of field performance and practical constraints in agriculture. World Journal of Microbiology and Biotechnology. 41: 1-15. Santoyo, G., Moreno-Hagelsieb, G., del Carmen Orozco-Mosqueda, M. and Glick, B. R. 2016. Plant growth-promoting bacterial endophytes. Microbiological Research. 183: 92-99. Scherm, H., Christiano, R. S. C., Esker, P. D., Del Ponte, E. M. and Godoy, C. V. 2009. Quantitative review of fungicide efficacy trials for managing soybean rust in Brazil. Crop Protection. 28: 774-782. Schloss, P. D. and Handelsman, J. 2005. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Applied and Environmental Microbiology.71: 1501-1506. Schöller, C. E. G., Gürtler, H., Pedersen, R., Molin, S. and Wilkins, K. 2002. Volatile metabolites from Actinomycetes. Journal of Agricultural and Food Chemistry. 50: 2615-2621. Schulz, B. and Boyle, C. 2005. The endophytic continuum. Mycological Research. 109: 661-686. Serandour, P., Plouzeau, C., Michaud, A., Broutin, L., Cremniter, J., Burucoa, C. and Pichon, M. 2025. Lethal case of Microbacterium paraoxydans bloodstream infection associated with mitral endocarditis in human: A case report, analyses of the 16S rDNA sequences and review of the literature. Diagnostic Microbiology and Infectious Disease. 111: 116739. Sharma, P., Pandey, R. and Chauhan, N. S. 2025. Stenotrophomonas maltophilia promotes wheat growth by enhancing nutrient assimilation and rhizosphere microbiota modulation. Frontiers in Bioengineering and Biotechnology. 13: 1563670. Shayanthan, A., Ordoñez, P. A. C. and Oresnik, I. J. 2022. The role of synthetic microbial communities (SynCom) in sustainable agriculture. Frontiers in Agronomy. 4: 896307. Simon, C. and Daniel, R. 2011. Metagenomic analyses: past and future trends. Applied and Environmental Microbiology. 77: 1153-1161. Singh, M., Awasthi, A., Soni, S. K., Singh, R., Verma, R. K. and Kalra, A. 2015. Complementarity among plant growth promoting traits in rhizospheric bacterial communities promotes plant growth. Scientific Reports. 5: 15500. Singh, M., Jha, S., Pathak, D. and Maisnam, G. 2025. Advancing biofertilizers: the evolution from single-strain formulations to synthetic microbial communities (SynCom) for sustainable agriculture. Discover Plants. 2: 226. Singh, R. P. and Jha, P. N. 2017. The PGPR Stenotrophomonas maltophilia SBP-9 augments resistance against biotic and abiotic stress in wheat plants. Frontiers in Microbiology. 8: 1945. Singh, R. P., Shelke, G. M., Kumar, A. and Jha, P. N. 2015. Biochemistry and genetics of ACC deaminase: a weapon to “stress ethylene” produced in plants. Frontiers in Microbiology. 6: 937. Spiegelman, D., Whissell, G. and Greer, C. W. 2005. A survey of the methods for the characterization of microbial consortia and communities. Canadian Journal of Microbiology. 51: 355-386. Stone, J. K., Bacon, C. W. and White Jr, J. F. 2000. An overview of endophytic microbes: endophytism defined. In: Bacon, C. W. and White, J. (Eds.). Microbial endophytes. CRC Press. 3-29. Suman, A., Govindasamy, V., Ramakrishnan, B., Aswini, K., SaiPrasad, J., Sharma, P., Pathak, D. and Annapurna, K. 2022. Microbial community and function-based synthetic bioinoculants: A perspective for sustainable agriculture. Frontiers in Microbiolog. 12: 805498. Sun, X., Xie, J., Zheng, D., Xia, R., Wang, W., Xun, W., Huang, Q., Zhang, R., Kovács, Á. T., Xu, Z. and Shen, Q. 2023. Metabolic interactions affect the biomass of synthetic bacterial biofilm communities. mSystems. 8: e0104523. Suryanto, D., Yasmin, N., Munir, E. and Bungsu, A. 2018. An assay on endophytic bacteria from corn and paddy to control damping-off of Rhizoctonia solani in corn seedling. In Journal of Physics: Conference Series. 1116: 052068. Talhinhas, P. and Baroncelli, R. 2021. Colletotrichum species and complexes: geographic distribution, host range and conservation status. Fungal Diversity. 110:109-198. Tanuma, M., Sakurai, T., Nakaminami, H. and Tanaka, M. 2025. Risk factors and clinical characteristics for Stenotrophomonas maltophilia infection in an acute care hospital in Japan: a single-center retrospective study. Journal of Pharmaceutical Health Care and Sciences. 11: 24. Tariq, A., Guo, S., Farhat, F. and Shen, X. 2025. Engineering synthetic microbial communities: diversity and applications in soil for plant resilience. Agronomy. 15: 513. Tariq, M., Tahreem, N., Zafar, M., Raza, G., Shahid, M., Zunair, M., Iram, W. and Zahra, S. T. 2024. Occurrence of diverse plant growth promoting bacteria in soybean [Glycine max (L.) Merrill] root nodules and their prospective role in enhancing crop yield. Biocatalysis and Agricultural Biotechnology. 57: 103072. Teixeira, P. J. P., Colaianni, N. R., Fitzpatrick, C. R. and Dangl, J. L. 2019. Beyond pathogens: microbiota interactions with the plant immune system. Current Opinion in Microbiology. 49: 7-17. Tian, J., Ge, F., Zhang, D., Deng, S. and Liu, X. 2021. Roles of phosphate solubilizing microorganisms from managing soil phosphorus deficiency to mediating biogeochemical P cycle. Biology. 10: 158. Toju, H., Peay, K. G., Yamamichi, M., Narisawa, K., Hiruma, K., Naito, K., Fukuda, S., Ushio, M., Nakaoka, S., Onoda, Y., Yoshida, K., Schlaeppi, K., Bai, Y., Sugiura, R., Ichihashi, Y., Minamisawa, K. and Kiers, E. T. 2018. Core microbiomes for sustainable agroecosystems. Nature Plants. 4: 247-257. Trinh, C. S., Lee, H., Lee, W. J., Lee, S. J., Chung, N., Han, J., Kim, J., Hong, S.-W. and Lee, H. 2018. Evaluation of the plant growth-promoting activity of Pseudomonas nitroreducens in Arabidopsis thaliana and Lactuca sativa. Plant Cell Reports. 37: 873-885. Trivedi, P., Leach, J. E., Tringe, S. G., Sa, T. and Singh, B. K. 2020. Plant-microbiome interactions: from community assembly to plant health. Nature Reviews Microbiology. 18: 607-621. Tsai, H.-H., Tang, Y., Jiang, L., Xu, X., Dénervaud Tendon, V., Pang, J., Jia, Y., Wippel, K., Vacheron, J., Keel, C., Andersen, T. G., Geldner, N. and Zhou, F. 2025. Localized glutamine leakage drives the spatial structure of root microbial colonization. Science. 390: 4235. Tzean, S. S., Tzeng, K. C., Chang, C. A., Tsay, T. T. and Yen, S. F. 2019. List of plant diseases in Taiwan. Bureau of animal and plant health inspection and quarantine, Council of agriculture, Executive yuan, Taiwan. Vacheron, J., Desbrosses, G., Bouffaud, M.-L., Touraine, B., Moënne-Loccoz, Y., Muller, D., Legendre, L., Wisniewski-Dyé, F. and Prigent-Combaret, C. 2013. Plant growth-promoting rhizobacteria and root system functioning. Frontiers in Plant Science. 4: 356. Van Loon, L. C., Bakker, P. A. H. M. and Pieterse, C. M. J. 1998. Systemic resistance induced by rhizosphere bacteria. Annual Review of Phytopathology. 36: 453-483. Vandenkoornhuyse, P., Quaiser, A., Duhamel, M., Le Van, A. and Dufresne, A. 2015. The importance of the microbiome of the plant holobiont. New Phytologist. 206: 1196-1206. Vasanthi, N., Saleena, L. M. and Raj, S. A. 2018. Silica solubilization potential of certain bacterial species in the presence of different silicate minerals. Silicon. 10: 267-275. Venturi, V. and Keel, C. 2016. Signaling in the rhizosphere. Trends in Plant Science. 21: 187-198. Vieira, M. E. O., Nunes, V. V., Calazans, C. C. and Silva-Mann, R. 2024. Unlocking plant defenses: harnessing the power of beneficial microorganisms for induced systemic resistance in vegetables-a systematic review. Biological Control. 188: 105428. Vishwakarma, K., Kumar, N., Shandilya, C., Mohapatra, S., Bhayana, S. and Varma, A. 2020. Revisiting plant-microbe interactions and microbial consortia application for enhancing sustainable agriculture: a review. Frontiers in Microbiology. 11: 560406. Vorholt, J. A., Vogel, C., Carlström, C. I. and Müller, D. B. 2017. Establishing causality: opportunities of synthetic communities for plant microbiome research. Cell Host and Microbe. 22: 142-155. Wei, J., Zhao, J., Suo, M., Wu, H., Zhao, M. and Yang, H. 2023. Biocontrol mechanisms of Bacillus velezensis against Fusarium oxysporum from Panax ginseng. Biological Control. 182: 105222. Weir, B. S., Johnston, P. R. and Damm, U. 2012. The Colletotrichum gloeosporioides species complex. Studies in Mycology. 73: 115-180. Weller, D. M., Raaijmakers, J. M., Gardener, B. B. M. and Thomashow, L. S. 2002. Microbial populations responsible for specific soil suppressiveness to plant pathogens. Annual Review of Phytopathology. 40: 309-348. White, J. F., Kingsley, K. L., Zhang, Q., Verma, R., Obi, N., Dvinskikh, S., Verma, S. K. Gond, S. K. ,Kowalski K.P. and Elmore, M. T. 2019. Review: Endophytic microbes and their potential applications in crop management. Pest Management Science. 75: 2558-2565. Xia, Y., Liu, J., Chen, C., Mo, X., Tan, Q., He, Y., Wang, Z., Yin, J., & Zhou, G. 2022. The multifunctions and future prospects of endophytes and their metabolites in plant disease management. Microorganisms. 10: 1072. Xu, X. M., Jeffries, P., Pautasso, M. and Jeger, M. J. 2011. Combined use of biocontrol agents to manage plant diseases in theory and practice. Phytopathology. 101: 1024-1031. Xu, X., Dinesen, C., Pioppi, A., Kovács, Á. T. and Lozano-Andrade, C. N. 2025a. Composing a microbial symphony: synthetic communities for promoting plant growth. Trends in Microbiology. 33: 738-751. Xu, F., Wang, Y., Yang, J., Zhang, X., Wang, K., Ding, F., Pang, J., Tong, L., Bai, C., Chen, S., Sun, L., Du, C., Fang, J., Xu, M., Li, L., Yu, X., Gengli, J., Liu, J., Zhang, Q., Wang, Z., Zhu, Y., Zhang-Zheng, H., Zhang, J. and Xu, W. 2025b. Auxin‐producing Pseudomonas recruited by root flavonoids increases rice rhizosheath formation through the bacterial histidine kinase under soil drying. Advanced Science. 12: e00607. Xu, Y., Wang, Z., Wu, J., Yue, Y., Ren, Y., Pan, Y., Li, J., Liu, C., Borriss, R., Liu, X., Qiao, J., Lee, Y.-W., Wu, H., Dini-Andreote, F., Shen, Q., Xiong, W., Gao, X., Berendsen, R. L. and Gu, Q. 2025c. Keystone Pseudomonas species in the wheat phyllosphere microbiome mitigate Fusarium head blight by altering host pH. Cell Host & Microbe. 33: 2052-2066. Yang, H. C. 1990. Plant anthracnose caused by Colletotrichum species in Taiwan. Doctoral dissertation. Hokkaido University, Sapporo, Japan. Yang, M., Gao, Z., Zhu, N., Wang, H., Ni, S., Wang, X., Lv, X., Guo, X., Luo, W. and Wang, Y. 2025. Construction of synthetic microbial community associated with host metabolite accumulation and root rot control of Codonopsis pilosula. Scientia Horticulturae. 351: 114321. Yanti, Y., Hamid, H. and Habazar, T. 2020. The ability of indigenous Bacillus spp. consortia to control the anthracnose disease (Colletrotricum capsici) and increase the growth of chili plants. Biodiversitas. 21: 179-186. Yu, H., Wang, Z., Tian, R. and Xu, W. 2026. A simplified synthetic community from the healthy watermelon rhizosphere effectively mitigates Fusarium wilt. Pest Management Science. 82: 287-304. Yu, W., Sun, Z., Wang, M., Li, Z., Zhang, C., Sun, Y. and Wang, S. 2025. The first infant bloodstream infection caused by Pantoea dispersa in China: A case report and literature review. Infection and Drug Resistance. 661-667. Yu, Y.-H., Cho, Y.-T., Xu, Y.-C., Wong, Z.-J., Tsai, Y.-C. and Ariyawansa, H. A. 2024. Identifying and controlling anthracnose caused by Colletotrichum taxa of Welsh onion in Sanxing, Taiwan. Phytopathology. 114: 1263-1275. Yuan, C.-Y., Huang, C.-W., Lin, C.-P. and Huang, J.-H. 2023. First report of anthracnose-twister disease of Welsh onion caused by Colletotrichum siamense in Taiwan. Journal of General Plant Pathology. 89: 288-291. Yusuf, A., Li, M., Zhang, S.-Y., Odedishemi-Ajibade, F., Luo, R.-F., Wu, Y.-X., Zhang, T.-T., Yunusa Ugya, A., Zhang, Y. and Duan, S. 2025. Harnessing plant-microbe interactions: strategies for enhancing resilience and nutrient acquisition for sustainable agriculture. Frontiers in Plant Science. 16: 1503730. Zachar, I. and Boza, G. 2022. The evolution of microbial facilitation: sociogenesis, symbiogenesis, and transition in individuality. Frontiers in Ecology and Evolution. 10: 798045. Zhang, N., Wang, D., Liu, Y., Li, S., Shen, Q. and Zhang, R. 2014. Effects of different plant root exudates and their organic acid components on chemotaxis, biofilm formation and colonization by beneficial rhizosphere-associated bacterial strains. Plant and Soil. 374: 689-700. Zhang, Y., Jing, M., Lyu, L., Nie, L., Xu, X., Sun, R., Xu, X., Chen, S., He, S., Zhang, Y., Huang, P., Luo, W., Liang, J., Gao, G., Fan, K., Yang, T., Zhang, L., Fu, X., Allard, S. M., Gilbert, J. A., Zhang, J. and Chu, H. 2025. Principles for rigorous design and application of synthetic microbial communities. Advanced Science. 20: e14750. Zhang, Y. F., He, L. Y., Chen, Z. J., Wang, Q. Y., Qian, M. and Sheng, X. F. 2011. Characterization of ACC deaminase-producing endophytic bacteria isolated from copper-tolerant plants and their potential in promoting the growth and copper accumulation of Brassica napus. Chemosphere. 83: 57-62. Zhang, Z., Li, J., Zhang, Z., Liu, Y. and Wei, Y. 2021. Tomato endophytic bacteria composition and mechanism of suppressiveness of wilt disease (Fusarium oxysporum). Frontiers in Microbiology. 12: 731764. Zhou, J., Liu, Y., Xu, W., Wang, Z., Chen, W. and Hu, Y. 2024a. Effect of synthetic microbial communities on rhizosphere and root-endophytic microbiota of soybean. Chinese Journal of Eco-Agriculture. 32: 571-581. Zhou, Y., Liu, D., Li, F., Dong, Y., Jin, Z., Liao, Y., Li, X., Peng, S., Delgado-Baquerizo, M. and Li, X. 2024b. Superiority of native soil core microbiomes in supporting plant growth. Nature Communications. 15: 6599. Zipfel, C. and Oldroyd, G. E. 2017. Plant signalling in symbiosis and immunity. Nature. 543: 328-336. | - |
| dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/101678 | - |
| dc.description.abstract | 青蔥 (Allium fistulosum L.) 為臺灣重要之香辛蔬菜，近年受 Colletotrichum siamense 所引起的新興病害青蔥捲葉型炭疽病 (anthracnose-twister disease of green onion) 危害，造成嚴重經濟損失。由於該病原具潛伏感染特性且現行化學防治效果有限，需發展替代性防治策略。本研究首先建立一穩定的病原性試驗系統，並分別篩選具促進植物生長與病原拮抗潛力之有益根部內生細菌 (beneficial root endophytes, BREs)，評估其合成菌群 (synthetic microbial community, SynCom) 於青蔥捲葉型炭疽病管理上之應用潛力。研究結果顯示，C. siamense Col-413 具穩定且較強之致病力，因此選定為標準病原菌株。透過比較不同接種濃度、接種方式及植株週齡，成功確立可穩定誘發中度病徵之接種條件。另外，不同青蔥品種 (系) 對青蔥捲葉型炭疽病之感病性不同，其中「北蔥」於實生苗與分蘗株苗階段皆展現較佳抗病性，而「吉品蔥」與「乙品小蔥」等四季蔥品種則表現更為感病。本研究成功分離出四株具顯著促進植物生長效果且非人體伺機病原之菌株，分別為Fictibacillus enclensis (S3R3)、Pseudomonas atacamensis (V3R2)、P. nitroreducens (V3K2) 及 Comamonas terrigena (O3N3)。於盆栽試驗中，上述菌株所組成之 SynComs (如 All 與 All-S3R3 組合) 於多數生長指標上皆顯著優於單一菌株與未處理對照組，顯示其具備促進青蔥生長之潛力；然而這些 SynComs 組合於試驗條件下未能顯著抑制病害發展。病原拮抗潛力與內生性菌株篩選中鑑定出 Bacillus velezensis 與 B. subtilis，其中 B. velezensis (C-KBM-453) 於實生苗防治試驗中可顯著降低罹病度，但在分蘗苗試驗中，所有處理組 (包含SynComs) 皆無顯著防治效果。綜言之，本研究確立穩定的感病系統與評估基礎，並證實 SynComs 在促進青蔥生長方面具應用潛力。未來透過優化內生菌接種濃度與施用策略，應可提升有益根部內生菌於青蔥整合性管理中之生物防治潛力。 | zh_TW |
| dc.description.abstract | Green onion (Allium fistulosum L.) is an important culinary herb in Taiwan. Recently, its production has been severely threatened by an emerging disease, anthracnose-twister disease caused by Colletotrichum siamense, resulting in substantial economic losses. Because this pathogen frequently establishes latent infections and current chemical control measures are often ineffective, the development of alternative management strategies is urgently needed. In this study, a stable pathogenicity assay system was first established, and beneficial root endophytes (BREs) with plant growth-promoting or antagonistic activities were subsequently screened to evaluate their application potential as synthetic microbial communities (SynComs) for managing anthracnose-twister disease of green onion. The results showed that C. siamense Col-413 exhibited stable and relatively high virulence and was therefore selected as the standard pathogen strain. By comparing various inoculum concentrations, inoculation methods, and plant ages, conditions that consistently resulted in moderate disease severity were successfully established. In addition, green onion cultivars (land variety) differed in their susceptibility to anthracnose-twister disease: both the seed-propagated seedlings and tiller-propagated plants of the “Beicong” cultivar exhibited comparatively higher resistance, whereas several “Sijicong” cultivars, including “Jipincong” and “Yipincong” were more susceptible. Four plant growth-promoting bacteria, showing no potential as human pathogens, were successfully isolated and identified as Fictibacillus enclensis (S3R3), Pseudomonas atacamensis (V3R2), P. nitroreducens (V3K2), and Comamonas terrigena (O3N3). In pot experiments, SynComs composed of these strains (e.g., the All and All-S3R3) performed significantly better than single-strain treatments and the untreated control in most growth-related parameters, indicating strong growth-promoting potential in green onion. However, under the experimental conditions tested, these SynComs did not significantly suppress disease development. During the screening of antagonistic and endophytic strains, Bacillus velezensis and B. subtilis were identified. Among them, B. velezensis (C-KBM-453) significantly reduced disease severity in seed-propagated seedlings, whereas no significant disease control effects were observed in tiller-propagated plants across all treatment, including the SynComs. Overall, this study establishes a stable and reproducible pathogenicity assay system and demonstrates the potential of the SynComs for promoting green onion growth. Further optimization of endophyte inoculum concentrations and application strategies may enhance the biocontrol potential of the beneficial root endophytes within integrated disease management programs for green onion. | en |
| dc.description.provenance | Submitted by admin ntu (admin@lib.ntu.edu.tw) on 2026-02-26T16:38:36Z No. of bitstreams: 0 | en |
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| dc.description.tableofcontents | 口試委員會審定書 I
誌謝 II 摘要 III Abstract V 目次 VII 表次 XIII 圖次 XIV 附表次 XVI 附圖次 XVII 壹、 前人研究 1 一、青蔥介紹 1 1. 青蔥簡史、營養價值與產業重要性 1 2. 青蔥栽培品種與特性 1 (a) 北蔥 1 (b) 四季蔥 2 (c) 大蔥 3 二、青蔥栽培管理概要 3 三、青蔥炭疽病概述 6 四、植物內生細菌與根部內生細菌之定義 9 五、有益根部內生細菌之功能與應用潛力 10 1. 促進植物生長之根部內生菌 (Plant growth-promoting root endophytic bacteria) 10 (a) 提升植物可利用養分 11 (b) 合成植物生長調節物質 11 2. 抑制病害之根部內生菌 (Disease-suppressive endophytic bacteria) 11 (a) 抗生素與次級代謝物的產生 11 (b) 細胞壁水解酵素的分泌 12 (c) 空間與營養競爭 13 (d) 誘導性系統抗性 (Induced systemic resistance, ISR) 13 3. 減緩逆境壓力之根部內生菌 (Stress-mitigating endophytic bacteria) 14 六、合成菌群 (synthetic microbial community, SynCom) 15 1. SynCom 的出現與定義 15 2. 菌相分析與 SynCom組合技術的成熟 16 3. SynCom 組合應用策略的演進 18 4. 根部內生SynCom 於植物生長促進與病害管理的應用現況 19 貳、研究動機與目的 21 參、材料與方法 23 一、供試植物與栽培條件 23 1. 青蔥品種來源 23 2. 栽培介質組成與滅菌方式 23 3. 實生苗之栽培流程 23 4. 分蘗苗之栽培與肥培管理 24 二、病原菌株來源、培養及接種源之製備 24 1. 病原菌株來源與保存 24 2. 產孢培養優化—scallion powder agar (SPA) 產孢培養基製備 25 3. 病原菌孢子懸浮液之製備與濃度調整 25 三、病原菌系統與病原性測試流程之建立 25 1. 病原菌系統建立策略與參考依據 25 2. 病原菌菌株篩選試驗 26 (a) 實生苗病原菌菌株篩選試驗 26 (b) 分蘗苗病原菌菌株篩選試驗 26 3. 接種濃度篩選試驗 26 4. 接種方式比較試驗 27 5. 不同植株週齡對感病性之影響 27 6. 不同青蔥品種之感病性評估 28 7. 病徵評估標準與罹病指數計算 28 四、促進植物生長潛力之內生菌篩選 29 1. 土壤樣本採集與保存 29 2. 促進植物生長菌株篩選流程 29 (a) 土壤萃取液製備、青蔥種子表面消毒與發芽處理 30 (b) 土壤萃取液處理青蔥種苗 30 (c) 根部組織液製備 30 (d) 促進植物生長潛力之內生菌分離、保存與培養 30 (e) 促進植物生長潛力之內生菌二次篩選 31 3. 評估單一菌株之促進植物生長能力 31 五、病原拮抗潛力菌株之篩選與內生能力確認 32 1. 候選菌株對病原菌之拮抗效果初步篩選 32 2. 候選菌株對病原菌拮抗能力之定量測試 32 3. 病原拮抗潛力候選菌株於植物根部內生能力確認 33 六、菌種鑑定 34 1. Genomic DNA 萃取 34 2. 聚合酶連鎖反應 (Polymerase chain reaction, PCR) 35 3. 電泳、純化與定序分析 35 七、促進植物生長候選菌株與病原菌之對峙培養試驗 36 八、候選菌株間之相容性與交互作用評估 36 1. 相容性測定 (Cross-streak test) 36 2. 吸引測試 (Strain attraction test) 37 3. 交叉餵養測試 (Cross-feeding) 37 (a) 條件培養液 (Conditioned medium, CM) 之製備 38 (b) 交叉餵養試驗設計與生長評估 38 九、促進植物生長潛力與病原拮抗潛力內生菌株及其 SynComs 之病害防治效果評估 38 1. 促進植物生長潛力內生菌株與其 SynComs 組合設計 39 2. 促進植物生長潛力內生菌株與其 SynComs 之接種與病害防治試驗 39 3. 病原拮抗潛力內生菌株與其 SynComs 組合設計 40 4. 病原拮抗潛力內生菌株與其 SynComs 之接種與病害防治試驗 40 (a) 實生苗防治試驗 40 (b) 分蘗苗防治試驗 40 十、統計分析 41 肆、結果 42 一、病原菌系統建立與病原菌致病力評估 42 1. 產孢培養條件之優化 (SPA 製備) 42 2. 不同 C. siamense 菌株之致病力比較 42 3. 接種濃度篩選與標準條件建立 43 4. 不同接種方式之比較 44 5. 不同植株週齡對感病性之影響 45 6. 不同青蔥品種對 C. siamense Col-413 之感病性 45 二、促進植物生長潛力內生菌之篩選與植株生長影響 46 1. 不同篩選批次之植株生長影響 46 2. 促進植物生長潛力之內生菌分離 47 3. 促進植物生長潛力之內生菌二次篩選 47 4. 評估單一菌株之促進植物生長能力 48 三、促進植物生長之候選菌株鑑定 49 四、促進植物生長候選菌株與病原菌之對峙培養 50 五、促進植物生長候選菌株間相容性與交互作用評估 50 1. 相容性測定 50 2. 吸引測試 50 3. 交叉餵養測試 51 (a) 純條件培養液 (CM) 下之菌株生長表現 51 (b) 條件培養液與新鮮培養液等體積混合 (CM:KBM = 1:1) 下之菌株生長表現 51 六、促進植物生長內生菌株及其 SynComs 對青蔥生長之影響 52 七、促進植物生長內生菌株及其 SynComs 之病害防治效果評估 53 八、病原拮抗潛力菌株之篩選與內生能力確認 54 1. 候選菌株對病原菌之拮抗效果初步篩選 54 2. 候選菌株對病原菌之拮抗能力定量測試 54 3. 病原拮抗候選菌株之根部內生能力確認 54 九、病原拮抗潛力之候選菌株鑑定 55 十、病原拮抗候選菌株間相容性與交互作用評估 55 1. 相容性測定 55 2. 吸引測試 55 3. 交叉餵養測試 56 (a) 純條件培養液下之菌株生長表現 56 (b) 條件培養液與新鮮培養基等體積混合 (CM:KBM = 1:1) 下之菌株生長表現 56 十一、病原拮抗潛力內生菌株及其 SynComs 之病害防治效果評估 57 1. 實生苗防治試驗 57 2. 分蘗苗防治試驗 57 伍、討論 58 陸、結論 70 柒、參考文獻 72 捌、表 102 玖、圖 109 拾、附表 151 拾壹、附圖 155 | - |
| dc.language.iso | zh_TW | - |
| dc.subject | 青蔥捲葉型炭疽病 | - |
| dc.subject | Colletotrichum siamense | - |
| dc.subject | 生物防治 | - |
| dc.subject | 植物內生菌 | - |
| dc.subject | 合成菌群 | - |
| dc.subject | Anthracnose-twister disease of green onion | - |
| dc.subject | Colletotrichum siamense | - |
| dc.subject | Biocontrol | - |
| dc.subject | Endophytic bacteria | - |
| dc.subject | Synthetic microbial community (SynCom) | - |
| dc.title | 根部內生細菌對青蔥捲葉型炭疽病生物防治潛力之評估 | zh_TW |
| dc.title | Evaluation of the biocontrol potential of root endophytic bacteria against anthracnose-twister disease in green onion | en |
| dc.type | Thesis | - |
| dc.date.schoolyear | 114-1 | - |
| dc.description.degree | 碩士 | - |
| dc.contributor.oralexamcommittee | 鍾嘉綾;黃晋興 | zh_TW |
| dc.contributor.oralexamcommittee | Chia-Lin Chung;Jin-Hsing Huang | en |
| dc.subject.keyword | 青蔥捲葉型炭疽病,Colletotrichum siamense生物防治植物內生菌合成菌群 | zh_TW |
| dc.subject.keyword | Anthracnose-twister disease of green onion,Colletotrichum siamenseBiocontrolEndophytic bacteriaSynthetic microbial community (SynCom) | en |
| dc.relation.page | 159 | - |
| dc.identifier.doi | 10.6342/NTU202600764 | - |
| dc.rights.note | 同意授權(限校園內公開) | - |
| dc.date.accepted | 2026-02-23 | - |
| dc.contributor.author-college | 生物資源暨農學院 | - |
| dc.contributor.author-dept | 植物醫學碩士學位學程 | - |
| dc.date.embargo-lift | 2031-01-28 | - |
| 顯示於系所單位： | 植物醫學碩士學位學程 | |
文件中的檔案：
| 檔案 | 大小 | 格式 | |
|---|---|---|---|
| ntu-114-1.pdf 未授權公開取用 | 13.7 MB | Adobe PDF | 檢視/開啟 |
系統中的文件，除了特別指名其著作權條款之外，均受到著作權保護，並且保留所有的權利。