Please use this identifier to cite or link to this item:
http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/99506Full metadata record
| ???org.dspace.app.webui.jsptag.ItemTag.dcfield??? | Value | Language |
|---|---|---|
| dc.contributor.advisor | 陳韋仁 | zh_TW |
| dc.contributor.advisor | Wei-Jen Chen | en |
| dc.contributor.author | 許凌藍 | zh_TW |
| dc.contributor.author | Ling-Lan Hsu | en |
| dc.date.accessioned | 2025-09-10T16:30:03Z | - |
| dc.date.available | 2025-09-11 | - |
| dc.date.copyright | 2025-09-10 | - |
| dc.date.issued | 2025 | - |
| dc.date.submitted | 2025-07-28 | - |
| dc.identifier.citation | Abbott, R. T. (1960). The genus Strombus in the Indo-Pacific. Indo-Pacific Mollusca, 1, 33-146.
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| dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/99506 | - |
| dc.description.abstract | 印度－西太平洋地區為全球最大的海洋生物地理區，其中心區域具有極高的海洋生物多樣性，並隨著遠離中心的距離逐漸遞減。儘管已有眾多理論試圖解釋形成此物種豐富度高度集中的原因，目前仍難以建立一套普遍適用於所有物種的共識性理論。為了更全面地理解形塑此廣大區域海洋生物多樣性的歷史與生態因素，針對具備不同生態特徵與棲位的物種所進行的每一項生物地理模式與演化歷史研究，皆能提供寶貴的見解。本論文回顧並整理前人對印度－西太平洋地區生物地理的相關研究，並透過兩件針對特定淺海域魚類物種的個案研究，分析歷史環境變遷(如更新世冰期循環)如何影響該區域淺海域物種的分布與演化歷程。
第一個個案探討了更新世冰期循環所引起的海平面變動與生物地理隔離事件，對一種廣泛分布於淺海、且相較於前人研究對象具有較短浮游幼生期之魚類，七帶豆娘魚，族群結構的影響。遺傳分析結果顯示，該物種在印度洋與太平洋之間存在明顯的族群遺傳結構。在太平洋地區，特別是在臺灣，觀察到兩個分布重疊但缺乏基因交流的族群，顯示可能已產生生殖隔離。族群歷史模擬結果顯示，更新世冰期循環期間，印度－太平洋屏障所造成的族群隔離，以及冰期期間族群限縮於庇護所並於間冰期發生的次級接觸皆可能是形塑七帶豆娘魚目前所觀察到之複雜族群遺傳結構的關鍵歷史因素。 第二個個案則聚焦於西南印度洋莫三比克海峽，探討五種淺海域魚類物種的族群動態。這些遠離印度－西太平洋中心區域的島嶼，在氣候變遷劇烈的冰期期間，可能也扮演了庇護所的角色，促使部分族群得以維持存續。遺傳分析結果顯示，這些物種皆在近代經歷過族群擴張，其時間大致落在末次最大冰期（約2萬年前）結束之後。此結果顯示，隨著海平面上升，存活於庇護所的物種得以擴張至新形成的沿海棲地，進而增加族群間的基因交流機會。這一過程可能促成了區域內高物種分化率的形成條件。 綜合而言，本論文有助於更全面理解冰期循環如何形塑印度－西太平洋地區不同淺海域魚類物種的族群演化歷史。研究同時強調整合多種互補性遺傳標記的重要性，並指出部分魚類物種具備成為未來生物地理與演化生物學研究理想模式物種的潛力。 | zh_TW |
| dc.description.abstract | The tropical Indo-West Pacific (IWP) region is the largest marine biogeographical province and harbours the highest concentration of marine biodiversity, particularly in its central area. Despite numerous hypotheses proposed to explain this remarkable species richness, no consensus has been reached. To advance our understanding of the complex evolutionary and ecological processes shaping present-day marine biodiversity patterns in this vast region, it is essential to integrate data from multiple species with diverse ecological traits and ecological niches, as each species may offer unique biogeographical and evolutionary insights. This dissertation presents two case studies on selected shallow-water fish species to investigate the influence of historical and ecological factors on their evolutionary trajectories, using complementary genetic markers.
The first case study investigates the impact of Pleistocene glacial cycle-induced biogeographical barriers and isolation in refugia caused by past sea-level fluctuations on Abudefduf septemfasciatus (commonly known as the banded sergeant), a widely distributed shallow-water damselfish characterised by a relatively short pelagic larval duration. Analyses of genome-wide SNPs and mitochondrial DNA reveal the presence of two major genetic clusters across the IWP: one in the Indian Ocean and the other in the Pacific Ocean. Within the Pacific cluster, two subclusters with overlapping distributions in Taiwan suggest potential reproductive isolation. Demographic analyses suggest that recurrent episodes of isolation caused by the Indo-Pacific Barrier and refugial persistence, followed by periods of secondary contact during the Pleistocene glacial cycles, likely shaped the complex population structures observed today. The second case study explores the population dynamics of five shallow-water fish species from the remote islands in the Mozambique Channel. These islands likely served as glacial refugia, preserving marine populations during periods of climatic instability. Mitochondrial and genome-wide SNP analyses reveal signals of recent population expansion, likely occurring after the Last Glacial Maximum (~20,000 years ago). As sea levels rose, species from these refugia recolonised the newly available coastal habitats, fostering increased ecological interactions and potentially promoting diversification. These dynamics may have potentially contributed to the elevated rates of speciation observed in the region. Together, these case studies provide new insights into the historical processes, particularly glacial cycles, that have shaped the population genetic structure and demographic histories of shallow-water fish species in the IWP. The findings underscore the importance of integrating complementary genetic markers and highlight the utility of these fish species as promising models for future research in marine biogeography and evolutionary biology. | en |
| dc.description.provenance | Submitted by admin ntu (admin@lib.ntu.edu.tw) on 2025-09-10T16:30:03Z No. of bitstreams: 0 | en |
| dc.description.provenance | Made available in DSpace on 2025-09-10T16:30:03Z (GMT). No. of bitstreams: 0 | en |
| dc.description.tableofcontents | 致謝 i
Acknowledgement iii 摘要 v Abstract vii Contents ix List of Figures xii List of Tables xiv List of Abbreviations xvi Chapter 1. General Introduction 1 1.1 Climate Change on Marine Biodiversity Patterns and Loss 1 1.2 Glacial and Interglacial Impacts on Shallow-Water Habitats 2 1.2.1 Impacts on Coral Reefs 3 1.2.2 Impacts on Mangroves 4 1.2.3 Impacts of Habitat Shifts on Resident Organisms 5 1.3 Biodiversity Patterns in the Indo-West Pacific 6 1.3.1 Non-Glacial-Related Hypotheses 8 1.3.2 Glacial-Related Hypothesis 9 1.3.3 From Biogeography to Phylogeography 11 1.4 Phylogeographical Studies of the Indo-West Pacific 12 1.4.1 Innovation of Molecular Markers 13 1.4.2 Predominant Usage in Indo-West Pacific Studies 14 1.4.3 Insights and Challenges 15 1.5 The Objectives of this Dissertation 16 Chapter 2. Case study: Phylogeography of the Banded Sergeants 18 2.1 Introduction 18 2.2 Materials and Methods 20 2.2.1 Sample Collection 20 2.2.2 Preparation of SNP Dataset 20 2.2.3 Preparation of Concatenated Mitochondrial Genes Dataset 22 2.2.4 Phylogenetic Inference 23 2.2.5 Population Genetic Inference 24 2.2.6 Demographic Inference 27 2.3 Results 29 2.3.1 SNP Dataset 29 2.3.2 Concatenated Mitochondrial Genes Dataset 32 2.4 Discussion 34 2.4.1 Indian vs. Pacific Population Structure 34 2.4.2 Evidence of Secondary Contact in the Central IWP 35 2.4.3 Within-Ocean Population Structure 36 2.4.4 Potentially Reproductively Isolated Populations 37 2.4.5 Correspondence to Pleistocene Cycles 38 2.4.6 Summary 39 Chapter 3. Case Study: Population Dynamics in the Periphery 71 3.1 Introduction 71 3.2 Materials and Methods 74 3.2.1 Sample Collection 74 3.2.2 Molecular Data Collection and Data Filtration 74 3.2.3 Detection of Population Demographic Signals 78 3.2.4 Inference of Historical Population Size Changes 78 3.2.5 Habitat Availability Estimation Based on Seafloor Bathymetry 80 3.3 Results 80 3.3.1 Characteristics of the Molecular Datasets 80 3.3.2 COI Haplotype Network 81 3.3.3 Signals of Population Expansion 82 3.3.4 Effective Population Size Changes 82 3.4 Discussion 83 3.4.1 Impact of the Last Glacial Maximum 84 3.4.2 Timing and Patterns of Post-LGM Expansion 84 3.4.3 Post-LGM Expansion as a Calibration Point 86 3.4.4 Erasure and Retention of Pre-LGM Signals 87 3.4.5 Post-Glacial Diversification Drivers 87 3.4.6. Summary 88 Chapter 4. Conclusion and Perspective 107 References 109 Appendix I Phylogeographical Studies of Tropical Indo-Pacific Ray-Finned Reef Fish Species. 157 Appendix II Publication 163 | - |
| dc.language.iso | en | - |
| dc.subject | 族群變動 | zh_TW |
| dc.subject | 「中心」假說 | zh_TW |
| dc.subject | 更新世冰河循環 | zh_TW |
| dc.subject | 地理屏障 | zh_TW |
| dc.subject | 海平面變動 | zh_TW |
| dc.subject | 冰河期庇護所 | zh_TW |
| dc.subject | 遺傳標記整合 | zh_TW |
| dc.subject | “centre-of” hypotheses | en |
| dc.subject | integrative genetic markers | en |
| dc.subject | glacial refugium | en |
| dc.subject | geographical barriers | en |
| dc.subject | sea-level fluctuations | en |
| dc.subject | Pleistocene glacial cycles | en |
| dc.subject | population demography | en |
| dc.title | 印度─西太平洋地區淺水域魚類之族群基因體與生物地理研究 | zh_TW |
| dc.title | Population Genomics and Biogeography of Shallow-Water Fishes in the Indo-West Pacific | en |
| dc.type | Thesis | - |
| dc.date.schoolyear | 113-2 | - |
| dc.description.degree | 博士 | - |
| dc.contributor.oralexamcommittee | 于宏燦;魏國彥;鄭任鈞;Giacomo Bernadi | zh_TW |
| dc.contributor.oralexamcommittee | Hon-Tsen Yu;Kou-Yen Wei;Ren-Chung Cheng;Giacomo Bernadi | en |
| dc.subject.keyword | 族群變動,「中心」假說,更新世冰河循環,地理屏障,海平面變動,冰河期庇護所,遺傳標記整合, | zh_TW |
| dc.subject.keyword | population demography,“centre-of” hypotheses,Pleistocene glacial cycles,sea-level fluctuations,geographical barriers,glacial refugium,integrative genetic markers, | en |
| dc.relation.page | 179 | - |
| dc.identifier.doi | 10.6342/NTU202501653 | - |
| dc.rights.note | 同意授權(全球公開) | - |
| dc.date.accepted | 2025-07-30 | - |
| dc.contributor.author-college | 理學院 | - |
| dc.contributor.author-dept | 海洋研究所 | - |
| dc.date.embargo-lift | 2027-12-31 | - |
| Appears in Collections: | 海洋研究所 | |
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| File | Size | Format | |
|---|---|---|---|
| ntu-113-2.pdf Until 2027-12-31 | 7.33 MB | Adobe PDF |
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