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| DC 欄位 | 值 | 語言 |
|---|---|---|
| dc.contributor.advisor | 謝旭亮 | zh_TW |
| dc.contributor.advisor | Hsu-Liang Hsieh | en |
| dc.contributor.author | 葉庭妤 | zh_TW |
| dc.contributor.author | Ting-Yu Yeh | en |
| dc.date.accessioned | 2025-08-19T16:25:17Z | - |
| dc.date.available | 2025-08-20 | - |
| dc.date.copyright | 2025-08-19 | - |
| dc.date.issued | 2025 | - |
| dc.date.submitted | 2025-08-12 | - |
| dc.identifier.citation | Chen, D., Lyu, M., Kou, X., Li, J., Yang, Z., Gao, L., Li, Y., Fan, L.M., Shi, H., and Zhong, S. (2022). Integration of light and temperature sensing by liquid-liquid phase separation of phytochrome B. Mol Cell 82, 3015-3029 e3016.
Chen, M., and Chory, J. (2011). Phytochrome signaling mechanisms and the control of plant development. Trends Cell Biol 21, 664-671. Chen, M., Chory, J., and Fankhauser, C. (2004). Light signal transduction in higher plants. Annu Rev Genet 38, 87-117. Chen, M., Tao, Y., Lim, J., Shaw, A., and Chory, J. (2005). Regulation of phytochrome B nuclear localization through light-dependent unmasking of nuclear-localization signals. Curr Biol 15, 637-642. Choi, I.K.Y., Chaturvedi, A.K., Sng, B.J.R., Vu, K.V., and Jang, I.-C. (2024). Organ-specific transcriptional regulation by HFR1 and HY5 in response to shade in Arabidopsis. Frontiers in Plant Science 15. Desnos, T., Puente, P., Whitelam, G.C., and Harberd, N.P. (2001). FHY1: a phytochrome A-specific signal transducer. Genes Dev 15, 2980-2990. Fairchild, C.D., Schumaker, M.A., and Quail, P.H. (2000). HFR1 encodes an atypical bHLH protein that acts in phytochrome A signal transduction. Genes & Development 14, 2377-2391. Fankhauser, C., and Chory, J. (2000). RSF1, an Arabidopsis locus implicated in phytochrome A signaling. Plant Physiology 124, 39-46. Galvao, V.C., and Fankhauser, C. (2015). Sensing the light environment in plants: photoreceptors and early signaling steps. Curr Opin Neurobiol 34, 46-53. Han, R., Ma, L., Terzaghi, W., Guo, Y., and Li, J. (2024). Molecular mechanisms underlying coordinated responses of plants to shade and environmental stresses. Plant J 117, 1893-1913. Hsieh, H.L., Okamoto, H., Wang, M., Ang, L.H., Matsui, M., Goodman, H., and Deng, X.W. (2000). FIN219, an auxin-regulated gene, defines a link between phytochrome A and the downstream regulator COP1 in light control of Arabidopsis development. Genes & development 14, 1958-1970. Jang, I.C., Yang, J.Y., Seo, H.S., and Chua, N.H. (2005). HFR1 is targeted by COP1 E3 ligase for post-translational proteolysis during phytochrome A signaling. Genes Dev 19, 593-602. Jiang, H.W., Peng, K.C., Hsu, T.Y., Chiou, Y.C., and Hsieh, H.L. (2023). Arabidopsis FIN219/JAR1 interacts with phytochrome A under far-red light and jasmonates in regulating hypocotyl elongation via a functional demand manner. PLoS Genet 19, e1010779. Kelly, G., Brandsma, D., Egbaria, A., Stein, O., Doron-Faigenboim, A., Lugassi, N., Belausov, E., Zemach, H., Shaya, F., Carmi, N., Sade, N., and Granot, D. (2021). Guard cells control hypocotyl elongation through HXK1, HY5, and PIF4. Commun Biol 4, 765. Kim, C., Kwon, Y., Jeong, J., Kang, M., Lee, G.S., Moon, J.H., Lee, H.J., Park, Y.I., and Choi, G. (2023). Phytochrome B photobodies are comprised of phytochrome B and its primary and secondary interacting proteins. Nat Commun 14, 1708. Kim, J., Lee, H., Lee, H.G., and Seo, P.J. (2021). Get closer and make hotspots: liquid-liquid phase separation in plants. EMBO Rep 22, e51656. Kuo, H.-C. (2013). Functional Studies of FIN219 and HFR1 Regulatory Relationship in the Integration of Shade Avoidance Syndrome and Jasmonate Signaling in Arabidopsis. 碩士論文,植物科學研究所,臺灣大學,臺北 Kwon, Y., Kim, C., and Choi, G. (2024). Phytochrome B photobody components. New Phytol 242, 909-915. Lee, J., He, K., Stolc, V., Lee, H., Figueroa, P., Gao, Y., Tongprasit, W., Zhao, H., Lee, I., and Deng, X.W. (2007). Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development. Plant Cell 19, 731-749. Li, J., Li, G., Wang, H., and Wang Deng, X. (2011). Phytochrome signaling mechanisms. Arabidopsis Book 9, e0148. Lu, X.D., Zhou, C.M., Xu, P.B., Luo, Q., Lian, H.L., and Yang, H.Q. (2015). Red-light-dependent interaction of phyB with SPA1 promotes COP1-SPA1 dissociation and photomorphogenic development in Arabidopsis. Mol Plant 8, 467-478. Luo, Q., Lian, H.L., He, S.B., Li, L., Jia, K.P., and Yang, H.Q. (2014). COP1 and phyB Physically Interact with PIL1 to Regulate Its Stability and Photomorphogenic Development in Arabidopsis. Plant Cell 26, 2441-2456. Luo, Y., and Shi, H. (2019). Direct Regulation of Phytohormone Actions by Photoreceptors. Trends Plant Sci 24, 105-108. Malakar, B.C., Escudero, C.M., Sethi, V., Upadhyaya, G., Gangappa, S.N., and Botto, J.F. (2025). The COP1(W467) tryptophan residue in the WD40 domain is essential for light- and temperature-mediated hypocotyl growth and flowering in Arabidopsis. Plant J 121, e70051. Martinez-Garcia, J.F., and Rodriguez-Concepcion, M. (2023). Molecular mechanisms of shade tolerance in plants. New Phytol 239, 1190-1202. Paik, I., and Huq, E. (2019). Plant photoreceptors: Multi-functional sensory proteins and their signaling networks. Semin Cell Dev Biol 92, 114-121. Paulisic, S., Qin, W., Arora Veraszto, H., Then, C., Alary, B., Nogue, F., Tsiantis, M., Hothorn, M., and Martinez-Garcia, J.F. (2021). Adjustment of the PIF7-HFR1 transcriptional module activity controls plant shade adaptation. EMBO J 40, e104273. Peng, K.C., Siao, W., and Hsieh, H.L. (2023). FAR-RED INSENSITIVE 219 and phytochrome B corepress shade avoidance via modulating nuclear speckle formation. Plant Physiol 192, 1449-1465. Pham, V.N., Kathare, P.K., and Huq, E. (2018). Phytochromes and Phytochrome Interacting Factors. Plant Physiol 176, 1025-1038. Shi, H., Zhong, S., Mo, X., Liu, N., Nezames, C.D., and Deng, X.W. (2013). HFR1 sequesters PIF1 to govern the transcriptional network underlying light-initiated seed germination in Arabidopsis. Plant Cell 25, 3770-3784. Sng, B.J.R., Vu, K.V., Choi, I.K.Y., Chin, H.J., and Jang, I.C. (2023). LONG HYPOCOTYL IN FAR-RED 1 mediates a trade-off between growth and defence under shade in Arabidopsis. J Exp Bot 74, 3560-3578. Soh, M.S., Kim, Y.M., Han, S.J., and Song, P.S. (2000). REP1, a basic helix-loop-helix protein, is required for a branch pathway of phytochrome A signaling in Arabidopsis. The Plant Cell 12, 2061-2073. Stawska, M., and Oracz, K. (2019). phyB and HY5 are Involved in the Blue Light-Mediated Alleviation of Dormancy of Arabidopsis Seeds Possibly via the Modulation of Expression of Genes Related to Light, GA, and ABA. Int J Mol Sci 20. Tripathi, S., Hoang, Q.T.N., Han, Y.J., and Kim, J.I. (2019). Regulation of Photomorphogenic Development by Plant Phytochromes. Int J Mol Sci 20. Van Buskirk, E.K., Decker, P.V., and Chen, M. (2012). Photobodies in light signaling. Plant Physiol 158, 52-60. Willige, B.C., Yoo, C.Y., and Saldierna Guzman, J.P. (2024). What is going on inside of phytochrome B photobodies? Plant Cell 36, 2065-2085. Yang, J., Lin, R., Sullivan, J., Hoecker, U., Liu, B., Xu, L., Deng, X.W., and Wang, H. (2005). Light regulates COP1-mediated degradation of HFR1, a transcription factor essential for light signaling in Arabidopsis. Plant Cell 17, 804-821. Zhang, X.N., Wu, Y., Tobias, J.W., Brunk, B.P., Deitzer, G.F., and Liu, D. (2008). HFR1 is crucial for transcriptome regulation in the cryptochrome 1-mediated early response to blue light in Arabidopsis thaliana. PLoS One 3, e3563. | - |
| dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/98844 | - |
| dc.description.abstract | 植物生長與發育會受到外界光環境與內在荷爾蒙訊息的共同調控,尤其在自然環境中光的變化與植物本身的防禦需求常會互相牴觸,因此植物必須依據環境變化,在生長與防禦之間做出平衡。茉莉酸(jasmonate,JA)作為植物重要的防禦荷爾蒙之一,其訊息傳遞會與光訊號交互作用來調節植物對逆境的反應。前人研究指出,紅光主要的接受器 phytochrome B(phyB)除了參與光形態發生外,也可與 FAR-RED INSENSITIVE 219(FIN219)結合,進一步調控茉莉酸訊息傳遞與光小體(photobody,PB)的形成。在遮陰環境下,非活化態的phyB會與去磷酸化的 FIN219結合,抑制茉莉酸下游訊息傳遞路徑並使得PB無法形成,從而促進阿拉伯芥下胚軸的延長。此外FIN219亦可與轉錄因子LONG HYPOCOTYL IN FAR-RED 1(HFR1)互相調節,共同參與遮陰反應與茉莉酸調控的訊息路徑。綜合以上研究顯示HFR1、phyB與FIN219這三者之間可能存在更廣泛的交互關係與調控網路,以及我們想進一步了解他們對於光與茉莉酸訊息路徑中的交互作用與功能。我們發現HFR1不僅在各種光條件下皆會與phyB、FIN219相互作用,並且在遠紅光、藍光與遮陰環境下三者會協同調控下胚軸的延長。此外HFR1與FIN219之間的交互作用位置會受到外源性茉莉酸(MeJA)處理所影響,反映出HFR1在光與荷爾蒙訊號之間的關鍵功能。本研究也首次揭示HFR1不僅參與光形態發生的調控,還影響phyB所召集形成的PB型態與分布而改變其數量與大小,顯示其對於PB組成與調控中扮演結構性角色。這些結果進一步證實HFR1在phyB介導之光訊號與FIN219的茉莉酸訊息路徑整合中具有多面向調節功能。總結而言,我們的研究證實HFR1參與光與茉莉酸訊息傳遞路徑的調控,並且與phyB、FIN219共同協同調控下胚軸延長與PB的型態,這些結果都表示HFR1是作為整合光與荷爾蒙訊息的核心之一,在植物生長與防禦平衡策略中扮演關鍵角色。本研究建構出HFR1–phyB–FIN219的模組,作為光與荷爾蒙訊號交互作用的嶄新見解,未來將可進一步探討植物生長與防禦相關的下游基因表現,以及檢測花青素與葉綠素的含量變化,以更全面了解此調控網路在植物生理上的功能意義與生態適應策略。 | zh_TW |
| dc.description.abstract | The interaction between light and jasmonates (JAs) is critical in regulating plant growth and defense responses. Previous studies revealed that the inactive Pr form of phytochrome B (phyB) binds to the dephosphorylated FAR-RED INSENSITIVE 219 (FIN219)/JASMONATE RESISTANT1 (JAR1), inhibiting JA signaling pathway and phyB-associated photobodies (PBs) formation under shade. Additionally, FIN219 and the transcription factor LONG HYPOCOTYL IN FAR-RED 1 (HFR1) mutually regulate each other, mediating downstream shade-inducible genes and JA signaling. According to these studies, I want to understand whether HFR1 regulates phyB-associated PBs, the relationship among these three proteins, and the role of HFR1 in light and JA signaling pathways. To figure out these questions, I generated hfr1-201 phyB-1 double mutant, fin219-2 phyB-1 hfr1-201 triple mutant, and overexpression lines. Current study demonstrates that HFR1 participates in far-red, blue, and shade light signaling pathways, co-regulating hypocotyl elongation with phyB and FIN219. Through the transient assay, HFR1 physically interacts with phyB and FIN219 under various light conditions, with exogenous methyl jasmonate (MeJA) influencing their interaction, which suggests that HFR1 plays a significant role in phyB-mediated light signaling and JA signaling. Importantly, we also found that HFR1 mediated phyB-associated PBs formation and pattern under the high R: FR light condition and was influenced by MeJA treatment. Taken together, HFR1 participates in the light and JA signaling pathways and plays a significant role in the trade-offs between growth and defense in Arabidopsis. Shortly, I will have a better understanding and insights into light and hormone-integrated regulatory mechanisms in plants. | en |
| dc.description.provenance | Submitted by admin ntu (admin@lib.ntu.edu.tw) on 2025-08-19T16:25:17Z No. of bitstreams: 0 | en |
| dc.description.provenance | Made available in DSpace on 2025-08-19T16:25:17Z (GMT). No. of bitstreams: 0 | en |
| dc.description.tableofcontents | 口試委員會審定書 .................................................................................................... I
誌謝 .......................................................................................................................... II 中文摘要 ................................................................................................................. III Abstract .................................................................................................................. IV Contents ................................................................................................................... V List of Figures ...................................................................................................... VII List of Supplemental Figures and Tables ............................................................. IX Introduction ............................................................................................................. 1 1. Phytochrome B and Photobody Dynamics in Light Response .................. 1 2. FIN219 as a Converging Node in Light and Jasmonate Signaling ............ 2 3. HFR1 in Shade Avoidance and Hormone Crosstalk ................................. 2 4. Integrative Interactions Among HFR1, phyB, and FIN219 ...................... 4 5. Significance and Objectives of This Study ................................................ 5 Materials and Methods ........................................................................................... 7 1. Plant Materials and Growth Conditions .................................................... 7 2. Measurement of Hypocotyl Lengths ......................................................... 7 3. Bimolecular Fluorescence Complementation (BiFC) ............................. 8 4. Protein Extraction and Western Blotting ................................................... 8 5. Total RNA Isolation and RT-PCR ............................................................. 8 6. Assays of phyB-associated Photobodies Formation .................................. 9 7. Statistical Analysis .................................................................................... 9 Results ..................................................................................................................... 10 1. Regulatory Relationships Between HFR1 and phyB or FIN219 Under Different Monochromatic Light Conditions .............................................. 10 2. Physical Interactions Between HFR1 and phyB or FIN219 Under Different Light Conditions ...................................................................................... 11 3. Regulatory Relationships Among HFR1, phyB, and FIN219 in Shade Avoidance ................................................................................................ 11 4. Physical Interactions Among HFR1, phyB, and FIN219 in Shade Avoidance ................................................................................................ 13 5. Combined Effects of Jasmonic Acid Signaling and Shade Avoidance on HFR1 Interactions with phyB and FIN219 .............................................. 13 6. Functional Roles of HFR1 in phyB-Associated Photobodies (PBs) Formation and Regulation by the JA Pathway .......................................................... 14 Discussion ............................................................................................................... 16 1. The Multifaceted Role of HFR1 in Light Signaling and Its Interaction with PHYB ....................................................................................................... 16 2. Integration of Hormonal Signals: The Role of HFR1 and FIN219 in JA Signaling .................................................................................................. 17 3. Coordination Between HFR1, PHYB, and FIN219 in Shade and JA-Mediated Growth Regulation .................................................................................. 17 4. The Role of HFR1 in Photobody Formation and Downstream Signal Modulation ............................................................................................... 18 5. Toward a Unified Model for Light and Hormonal Signal Integration .... 19 Figures .................................................................................................................... 21 References ............................................................................................................... 36 Supplemental Figures and Tables ......................................................................... 41 | - |
| dc.language.iso | en | - |
| dc.subject | HFR1 | zh_TW |
| dc.subject | phyB | zh_TW |
| dc.subject | FIN219 | zh_TW |
| dc.subject | 避蔭反應 | zh_TW |
| dc.subject | 光小體 | zh_TW |
| dc.subject | 茉莉酸 | zh_TW |
| dc.subject | FIN219 | en |
| dc.subject | HFR1 | en |
| dc.subject | phyB | en |
| dc.subject | JA | en |
| dc.subject | shade avoidance response | en |
| dc.subject | photobody | en |
| dc.title | 阿拉伯芥LONG HYPOCOTYL IN FAR-RED 1參與光與FAR-RED INSENSITIVE 219/JAR1的茉莉酸訊息傳遞路徑中調控phytochrome B形成光小體之功能性研究 | zh_TW |
| dc.title | Functional study of Arabidopsis LONG HYPOCOTYL IN FAR-RED 1 in regulating the formation of phytochrome B-associated photobodies in response to light and FAR-RED INSENSITIVE 219/JAR1-mediated jasmonic acid signaling pathways | en |
| dc.type | Thesis | - |
| dc.date.schoolyear | 113-2 | - |
| dc.description.degree | 碩士 | - |
| dc.contributor.oralexamcommittee | 蔡皇龍;李金美;鄭梅君;蕭蔚 | zh_TW |
| dc.contributor.oralexamcommittee | Huang-Lung Tsai;Chin-Mei Lee;Mei-Chun Cheng;Wei Siao | en |
| dc.subject.keyword | HFR1,phyB,FIN219,避蔭反應,光小體,茉莉酸, | zh_TW |
| dc.subject.keyword | HFR1,phyB,FIN219,shade avoidance response,photobody,JA, | en |
| dc.relation.page | 48 | - |
| dc.identifier.doi | 10.6342/NTU202503551 | - |
| dc.rights.note | 同意授權(全球公開) | - |
| dc.date.accepted | 2025-08-14 | - |
| dc.contributor.author-college | 生命科學院 | - |
| dc.contributor.author-dept | 植物科學研究所 | - |
| dc.date.embargo-lift | 2025-08-20 | - |
| 顯示於系所單位: | 植物科學研究所 | |
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