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| DC 欄位 | 值 | 語言 |
|---|---|---|
| dc.contributor.advisor | 何銘洋 | zh_TW |
| dc.contributor.advisor | Ming-Yang Ho | en |
| dc.contributor.author | 李映漾 | zh_TW |
| dc.contributor.author | Ying-Yang Li | en |
| dc.date.accessioned | 2024-08-19T16:11:22Z | - |
| dc.date.available | 2024-08-20 | - |
| dc.date.copyright | 2024-08-19 | - |
| dc.date.issued | 2024 | - |
| dc.date.submitted | 2024-08-06 | - |
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| dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/94763 | - |
| dc.description.abstract | 大部分藍綠菌僅能生長於可見光 (λ = 400-700 nm) 下，但有部分能吸收遠紅光 (λ = 700-750 nm) 行光合作用，稱之為遠紅光藍綠菌。這些遠紅光藍綠菌過去由多樣的環境中分離，其中多於溫泉環境中發現。然而，傳統方法如色素分析或純化培養難以系統化分析遠紅光藍綠菌的生態分佈。因此，我利用一個16S rRNA基因擴增子定序的方法—FRCI，調查11個臺灣溫泉的微生物群落。此外，透過其中30個溫泉樣本DNA測試專門針對藍綠菌擴增的CYA引子，與16S rRNA基因測序的通用微生物V3V4引子比較，其對藍綠菌分辨能力和效力。
結果顯示，遠紅光藍綠菌在台灣溫泉中分布廣泛，其相對豐度佔整體藍綠菌群落的0%至20%。其中，在龜丹溫泉，遠紅光藍綠菌佔整體藍綠菌群落的55%。此外，遠紅光藍綠菌的相對豐度會隨著溫泉pH值的上升而顯著增加，並且略隨著溫度的降低而減少。測序結果鑑定出11個遠紅光藍綠菌，主要屬於Leptolyngbya和Calothrix屬，此外，本研究也純化出三株先前未知其具有利用遠紅光能力的藍綠菌。我也從其他國家溫泉菌落資料中，發現在許多溫泉中常見的遠紅光藍綠菌Fischerella spp.在台灣僅少量分布，為台灣獨特的溫泉菌相生態提供重要線索。CYA引子在藍綠菌目組成的排序上表現出相似的結果，但在溫泉樣本中發現的多樣性高於V3V4引子。引子偏好的存在需要進一步通過定量的模擬微生物群落進行確認。我們的研究為了解台灣溫泉中獨特的遠紅光藍綠菌群落提供了基礎，並突顯了CYA引子在揭示藍綠菌多樣性方面的重要性。 | zh_TW |
| dc.description.abstract | Some cyanobacteria can harvest far-red light (FRL, wavelength = 700-750 nm) in addition to visible light (wavelength = 400-700 nm) for photosynthesis. These special cyanobacteria (hereafter far-red cyanobacteria) were predominantly isolated from hot springs and characterized by pigment or culture-based methods. However, these methods are limited in studying the distribution and ecological significance of far-red cyanobacteria. In this study, I investigated 11 hot springs in Taiwan using a 16S rRNA gene amplicon sequencing-based method named as Far-Red Cyanobacteria Identification (FRCI). Additionally, 30 hot spring samples were selected and amplified using cyanobacteria-specific CYA primers to compare their resolution and efficacy against the general prokaryotic V3V4 hypervariable regions used for 16S rRNA gene sequencing.
My investigation reveals that far-red cyanobacteria were widely distributed in 10 out of 11 hot springs. They comprised 0-55% of the cyanobacterial population. The population size positively correlates with pH value (r = 0.36, p<0.01) and negatively correlates with temperature ( r = -0.28, p<0.05). FRCI identified 11 distinct far-red cyanobacteria ASVs from hot spring samples, primarily belonging to genera Leptolyngbya and Calothrix. Cultivation under FRL revealed three previously unknown strains of cyanobacteria capable of utilizing FRL. These findings expand our understanding of far-red cyanobacterial diversity. Additionally, Fischerella spp. are common far-red cyanobacteria in Japan, China, and India; however, they are the minority in Taiwan hot springs. While CYA primers exhibited a similar ranking of cyanobacterial order composition, they found greater diversity in hot spring samples compared to V3V4 primers. The presence of primer preferences requires further confirmation with a mock community. Our study provides a basis for studying unique far-red cyanobacteria communities in Taiwan hot springs and highlights the importance of CYA primers in uncovering cyanobacterial diversity. | en |
| dc.description.provenance | Submitted by admin ntu (admin@lib.ntu.edu.tw) on 2024-08-19T16:11:22Z No. of bitstreams: 0 | en |
| dc.description.provenance | Made available in DSpace on 2024-08-19T16:11:22Z (GMT). No. of bitstreams: 0 | en |
| dc.description.tableofcontents | 論文口試委員審定書 i
誌謝 ii 摘要 iii Abstract iv Table of Contents vi List of Figures ix List of Tables x Supplementary Figures xi Supplementary Tables xii Chapter 1. Introduction 1 1.1 The role and significance of far-red light utilizing cyanobacteria 1 1.2 Innovative methods for studying FRLCyano distribution and adaptation 2 1.3 Insights into FRLCyano ecology in hot springs 3 1.4 Evaluating the specificity of 16S rRNA primers for Cyanobacteria 3 1.5 Exploring FRLCyano ecology and primer efficacy in Taiwan neutral to alkaline hot springs 4 Chapter 2. Materials and Methods 6 2.1 Sample collection 6 2.2 Pigment extraction and HPLC analysis 6 2.3 FRLCyano isolation 7 2.4 DNA extraction, PCR amplification, library construction and sequencing 8 2.5 Sequence processing 9 2.6 Statistical analysis 9 Chapter 3. Results 11 3.1 Hot spring sample site descriptions 11 3.2 The distribution of FRLCyano in Taiwan neutral-alkaline hot springs revealed by V3V4 primers 12 3.3 Environmental factors influencing FRLCyano and bacterial communities in Taiwan hot springs 14 3.4 Discovery of novel FRLCyano strains from Taiwan hot springs 15 3.5 The efficacy and resolution of CYA primers detected cyanobacteria in field samples 15 Chapter 4. Discussion 17 4.1 Ecological distribution and niche preferences of FRLCyano in Taiwan hot springs 17 4.2 Microbial diversity and cyanobacterial communities in Taiwan hot springs 18 4.3 Identification and broader ecological context of FRLCyano ASVs 20 4.4 Environmental distribution of FRLCyano in hot springs and marine-influenced environments 22 4.5 Comparing cyanobacterial detection efficacy: CYA vs. V3V4 primer pairs 23 4.6 Future works 25 References 27 Figures 32 Tables 44 Supplementary Data 50 | - |
| dc.language.iso | en | - |
| dc.title | 台灣溫泉菌相中遠紅光藍綠菌的相對豐度及其與酸鹼值和溫度之相關性探討 | zh_TW |
| dc.title | Investigation of the relative abundance of far-red light-utilizing cyanobacteria and its correlation with pH and temperature in microbial communities of hot springs in Taiwan | en |
| dc.type | Thesis | - |
| dc.date.schoolyear | 112-2 | - |
| dc.description.degree | 碩士 | - |
| dc.contributor.oralexamcommittee | 朱修安 ;劉勃佑 ;郭志鴻 | zh_TW |
| dc.contributor.oralexamcommittee | Hsiu-An Chu;Po-Yu Liu;Chih-Horng Kuo | en |
| dc.subject.keyword | 藍綠菌,遠紅光,16S菌相分析,台灣溫泉,生物膜, | zh_TW |
| dc.subject.keyword | Cyanobacteria,far-red light,16S metagenomics,Taiwan hot spring,Microbial mat, | en |
| dc.relation.page | 76 | - |
| dc.identifier.doi | 10.6342/NTU202403139 | - |
| dc.rights.note | 同意授權(全球公開) | - |
| dc.date.accepted | 2024-08-09 | - |
| dc.contributor.author-college | 生命科學院 | - |
| dc.contributor.author-dept | 植物科學研究所 | - |
| dc.date.embargo-lift | 2029-08-01 | - |
| 顯示於系所單位： | 植物科學研究所 | |
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