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  1. NTU Theses and Dissertations Repository
  2. 生命科學院
  3. 分子與細胞生物學研究所
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/94689
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dc.contributor.advisor朱雪萍zh_TW
dc.contributor.advisorHsueh-Ping Chuen
dc.contributor.author黃家樂zh_TW
dc.contributor.authorKa-Lok Wongen
dc.date.accessioned2024-08-16T17:32:23Z-
dc.date.available2024-08-17-
dc.date.copyright2024-08-16-
dc.date.issued2024-
dc.date.submitted2024-08-12-
dc.identifier.citationBettin, N., C. Oss Pegorar, and E. Cusanelli, The Emerging Roles of TERRA in Telomere Maintenance and Genome Stability. Cells, 2019. 8(3).
de Lange, T., Shelterin: the protein complex that shapes and safeguards human telomeres. Genes Dev, 2005. 19(18): p. 2100-10.
Giardini, M.A., et al., Telomere and telomerase biology. Prog Mol Biol Transl Sci, 2014. 125: p. 1-40.
Kelich, J.M., H. Papaioannou, and E. Skordalakes, Pol α-primase dependent nuclear localization of the mammalian CST complex. Communications Biology, 2021. 4(1): p. 349.
Chen, L.-Y., S. Redon, and J. Lingner, The human CST complex is a terminator of telomerase activity. Nature, 2012. 488(7412): p. 540-544.
Chen, L.-Y. and J. Lingner, CST for the grand finale of telomere replication. Nucleus, 2013. 4(4): p. 277-282.
Feng, X., et al., CTC1-mediated C-strand fill-in is an essential step in telomere length maintenance. Nucleic Acids Research, 2017. 45(8): p. 4281-4293.
Aramburu, T., S. Plucinsky, and E. Skordalakes, POT1-TPP1 telomere length regulation and disease. Computational and Structural Biotechnology Journal, 2020. 18: p. 1939-1946.
Palm, W., et al., Functional dissection of human and mouse POT1 proteins. Mol Cell Biol, 2009. 29(2): p. 471-82.
Tesmer, V.M., K.A. Brenner, and J. Nandakumar, Human POT1 protects the telomeric ds-ss DNA junction by capping the 5′ end of the chromosome. Science, 2023. 381(6659): p. 771-778.
Wu, P., H. Takai, and T. de Lange, Telomeric 3' overhangs derive from resection by Exo1 and Apollo and fill-in by POT1b-associated CST. Cell, 2012. 150(1): p. 39-52.
Wang, F., et al., The POT1–TPP1 telomere complex is a telomerase processivity factor. Nature, 2007. 445(7127): p. 506-510.
Azzalin, C.M. and J. Lingner, Telomere functions grounding on TERRA firma. Trends in Cell Biology, 2015. 25(1): p. 29-36.
Graf, M., et al., Telomere Length Determines TERRA and R-Loop Regulation through the Cell Cycle. Cell, 2017. 170(1): p. 72-85.e14.
Porro, A., et al., Molecular Dissection of Telomeric Repeat-Containing RNA Biogenesis Unveils the Presence of Distinct and Multiple Regulatory Pathways. Molecular and Cellular Biology, 2010. 30(20): p. 4808-4817.
Chu, H.P., et al., TERRA RNA Antagonizes ATRX and Protects Telomeres. Cell, 2017. 170(1): p. 86-101.e16.
Schoeftner, S. and M.A. Blasco, Developmentally regulated transcription of mammalian telomeres by DNA-dependent RNA polymerase II. Nature Cell Biology, 2008. 10(2): p. 228-236.
Cusanelli, E., Carmina Angelica P. Romero, and P. Chartrand, Telomeric Noncoding RNA TERRA Is Induced by Telomere Shortening to Nucleate Telomerase Molecules at Short Telomeres. Molecular Cell, 2013. 51(6): p. 780-791.
Kelman, Z., PCNA: structure, functions and interactions. Oncogene, 1997. 14(6): p. 629-640.
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Basavappa, M.G., J. Henao-Mejia, and S. Cherry, Protocol to assess RNA-RNA interactions in situ using an RNA-proximity ligation assay. STAR Protoc, 2022. 3(4): p. 101892.
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Chan, S.-N., TERRA regulates telomeres maintenance in mammalian. 2019, NTU.
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dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/94689-
dc.description.abstract端粒是保護基因組完整性的重要結構。適當的端粒維護對於保持端粒功能和防止癌症形成至關重要。TERRA 是一種從次端粒至端粒區域轉錄出的長鏈非編碼 RNA,與端粒維護相關,但其作用仍不清楚。先前的研究表明,TERRA 與 POT1 和 CST 複合物有顯著的相互作用,而這些在細胞周期中的端粒維護中起著不同的作用。因此,我研究了 TERRA、POT1 和 CST 複合物在細胞周期中的調控。通過流式細胞儀和細胞周期分類模型進行了細胞周期判定,細胞周期分類模型以作單細胞細胞周期判定。研究結果顯示,TERRA 在 S 期,特別是晚 S 期的表達水平很高,而 CST 複合物和 POT1 也在這一階段高度定位於端粒。RNA-protein PLA 結果也顯示,TERRA 與 POT1 或 CST 複合物在晚 S 期有高度相互作用。我們提出的觀點是,TERRA充當CST複合物短暫定位的對接位點。在中/晚S期,由於端粒的長度,CST複合物從TERRA轉移到端粒。在G2期,由於TERRA數量的減少,CST複合物定位於端粒,進行 C 鏈填充。zh_TW
dc.description.abstractTelomeres are essential structures that protect genome integrity. Proper telomere maintenance is crucial for maintaining telomere function and preventing cancer formation. TERRA, a long non-coding RNA transcribed from the sub-telomeric region, is associated with telomere maintenance, but its role remains elusive. Previous finding indicates that TERRA interacts with POT1 and the CST complex, regulates telomere maintenance in a cell cycle dependent manner. Therefore, I investigated the regulation of TERRA, POT1, and the CST complex during the cell cycle pregression. Cell phase determination was achieved through flow cytometry and a cell phase classification model at the single-cell level. Our findings show that TERRA levels are high in S phase, especially late S phase, while the CST complex and POT1 are also highly localized at telomeres during this phase. RNA-protein PLA also shows a high interaction of TERRA and POT1 or CST complex in late S phase. The proposed argument is that TERRA acts as a docking site for CST complex transient locating. In middle / late S phase, CST complex translocates from TERRA to telomere due to the length of telomere. In G2 phase, CST complex locates at telomere inducing C-strand fill-in due to the decreasing number of TERRA.en
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dc.description.tableofcontents論文口試委員會審定書 i
誌謝 ii
中文摘要 iii
Abstract iv
Content v
Content of figure viii
Content of supplmentary figure ix
Content of tables x
Chapter 1 Introduction 1
Chapter 2 Material and Method 6
2-1 Cell culture 6
2-2 Thymidine synchronization 7
2-3 Nucleofector for TERRA silencing 7
2-4 Flow cytometry with propidium iodide staining 8
2-5 Staining 8
2-5-1 Immuno-Fluorescence (IF) 9
2-5-2 Fluorescence in situ hybridization (FISH) 10
2-5-3 Proximity ligation assay (PLA) 11
2-6 Cell phase determination by PCNA staining pattern 13
2-6-1 Image acquisition 14
2-6-2 Image processing 14
2-6-3 Model training and validation 15
2-6-4 Quantification of TERRA intensity 16
2-6-5 Counting spots and colocalization 16
2-7 RNA extraction 17
2-8 cDNA synthesis 18
2-9 Quantitative PCR 18
Chapter 3 Results 20
3-1 High TERRA expression occurs in middle and late S phases 20
3-2 POT1 highly locates at telomeres in late S phase 22
3-3 CST complex predominantly localizes at telomeres during late S phase 23
3-4 Telomerase at telomeres decreases after TERRA depletion 24
3-5 Increased interactions between TERRA and POT1, as well as TERRA and STN1 in late S phase 24
Chapter 4 Discussions 26
Chapter 5 Supplementary data 47
Chapter 6 References 61
Abbreviations 67
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dc.language.isoen-
dc.titleTERRA, POT1和CST complex在細胞週期的調控zh_TW
dc.titleThe regulation of TERRA, POT1 and CST complex during cell cycle progressionen
dc.typeThesis-
dc.date.schoolyear112-2-
dc.description.degree碩士-
dc.contributor.oralexamcommittee謝佳龍;陳律佑;冀宏源zh_TW
dc.contributor.oralexamcommitteeChia-Lung Hsieh;Liuh-Yow Chen;Hung-Yuan Chien
dc.subject.keywordTERRA,POT1,CST複合物,端粒維護,zh_TW
dc.subject.keywordTERRA,POT1,CST complex,Telomere maintenance,en
dc.relation.page69-
dc.identifier.doi10.6342/NTU202403457-
dc.rights.note未授權-
dc.date.accepted2024-08-13-
dc.contributor.author-college生命科學院-
dc.contributor.author-dept分子與細胞生物學研究所-
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