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完整後設資料紀錄
DC 欄位 | 值 | 語言 |
---|---|---|
dc.contributor.advisor | 朱雪萍 | zh_TW |
dc.contributor.advisor | Hsueh-Ping Chu | en |
dc.contributor.author | 黃家樂 | zh_TW |
dc.contributor.author | Ka-Lok Wong | en |
dc.date.accessioned | 2024-08-16T17:32:23Z | - |
dc.date.available | 2024-08-17 | - |
dc.date.copyright | 2024-08-16 | - |
dc.date.issued | 2024 | - |
dc.date.submitted | 2024-08-12 | - |
dc.identifier.citation | Bettin, N., C. Oss Pegorar, and E. Cusanelli, The Emerging Roles of TERRA in Telomere Maintenance and Genome Stability. Cells, 2019. 8(3).
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Palm, W., et al., Functional dissection of human and mouse POT1 proteins. Mol Cell Biol, 2009. 29(2): p. 471-82. Tesmer, V.M., K.A. Brenner, and J. Nandakumar, Human POT1 protects the telomeric ds-ss DNA junction by capping the 5′ end of the chromosome. Science, 2023. 381(6659): p. 771-778. Wu, P., H. Takai, and T. de Lange, Telomeric 3' overhangs derive from resection by Exo1 and Apollo and fill-in by POT1b-associated CST. Cell, 2012. 150(1): p. 39-52. Wang, F., et al., The POT1–TPP1 telomere complex is a telomerase processivity factor. Nature, 2007. 445(7127): p. 506-510. Azzalin, C.M. and J. Lingner, Telomere functions grounding on TERRA firma. Trends in Cell Biology, 2015. 25(1): p. 29-36. Graf, M., et al., Telomere Length Determines TERRA and R-Loop Regulation through the Cell Cycle. Cell, 2017. 170(1): p. 72-85.e14. Porro, A., et al., Molecular Dissection of Telomeric Repeat-Containing RNA Biogenesis Unveils the Presence of Distinct and Multiple Regulatory Pathways. 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[cited 2024 16/4]; Available from: https://www.sigmaaldrich.com/TW/en/technical-documents/protocol/protein-biology/protein-expression/duolink-short-protocol. Zhang, W., et al., A proximity-dependent assay for specific RNA-protein interactions in intact cells. Rna, 2016. 22(11): p. 1785-1792. Basavappa, M.G., J. Henao-Mejia, and S. Cherry, Protocol to assess RNA-RNA interactions in situ using an RNA-proximity ligation assay. STAR Protoc, 2022. 3(4): p. 101892. Schindelin, J., et al., Fiji: an open-source platform for biological-image analysis. Nature Methods, 2012. 9(7): p. 676-682. Berthold, M.R., et al. KNIME: The Konstanz Information Miner. in Data Analysis, Machine Learning and Applications. 2008. Berlin, Heidelberg: Springer Berlin Heidelberg. OlympusImageJPlugin. 2023 [cited 2024 16/4]; Available from: https://imagej.net/formats/olympus. Stringer, C., et al., Cellpose: a generalist algorithm for cellular segmentation. Nature Methods, 2021. 18(1): p. 100-106. Livak, K.J. and T.D. Schmittgen, Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods, 2001. 25(4): p. 402-8. Xu, M., et al., TERRA-LSD1 phase separation promotes R-loop formation for telomere maintenance in ALT cancer cells. Nature Communications, 2024. 15(1): p. 2165. Silva, B., et al., TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells. Nature Communications, 2021. 12(1): p. 3760. Maicher, A., et al., Deregulated telomere transcription causes replication-dependent telomere shortening and promotes cellular senescence. Nucleic Acids Res, 2012. 40(14): p. 6649-59. Pfeiffer, V. and J. Lingner, TERRA promotes telomere shortening through exonuclease 1-mediated resection of chromosome ends. PLoS Genet, 2012. 8(6): p. e1002747. Chu, H.-P., et al., PAR-TERRA directs homologous sex chromosome pairing. Nature Structural & Molecular Biology, 2017. 24(8): p. 620-631. 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dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/94689 | - |
dc.description.abstract | 端粒是保護基因組完整性的重要結構。適當的端粒維護對於保持端粒功能和防止癌症形成至關重要。TERRA 是一種從次端粒至端粒區域轉錄出的長鏈非編碼 RNA,與端粒維護相關,但其作用仍不清楚。先前的研究表明,TERRA 與 POT1 和 CST 複合物有顯著的相互作用,而這些在細胞周期中的端粒維護中起著不同的作用。因此,我研究了 TERRA、POT1 和 CST 複合物在細胞周期中的調控。通過流式細胞儀和細胞周期分類模型進行了細胞周期判定,細胞周期分類模型以作單細胞細胞周期判定。研究結果顯示,TERRA 在 S 期,特別是晚 S 期的表達水平很高,而 CST 複合物和 POT1 也在這一階段高度定位於端粒。RNA-protein PLA 結果也顯示,TERRA 與 POT1 或 CST 複合物在晚 S 期有高度相互作用。我們提出的觀點是,TERRA充當CST複合物短暫定位的對接位點。在中/晚S期,由於端粒的長度,CST複合物從TERRA轉移到端粒。在G2期,由於TERRA數量的減少,CST複合物定位於端粒,進行 C 鏈填充。 | zh_TW |
dc.description.abstract | Telomeres are essential structures that protect genome integrity. Proper telomere maintenance is crucial for maintaining telomere function and preventing cancer formation. TERRA, a long non-coding RNA transcribed from the sub-telomeric region, is associated with telomere maintenance, but its role remains elusive. Previous finding indicates that TERRA interacts with POT1 and the CST complex, regulates telomere maintenance in a cell cycle dependent manner. Therefore, I investigated the regulation of TERRA, POT1, and the CST complex during the cell cycle pregression. Cell phase determination was achieved through flow cytometry and a cell phase classification model at the single-cell level. Our findings show that TERRA levels are high in S phase, especially late S phase, while the CST complex and POT1 are also highly localized at telomeres during this phase. RNA-protein PLA also shows a high interaction of TERRA and POT1 or CST complex in late S phase. The proposed argument is that TERRA acts as a docking site for CST complex transient locating. In middle / late S phase, CST complex translocates from TERRA to telomere due to the length of telomere. In G2 phase, CST complex locates at telomere inducing C-strand fill-in due to the decreasing number of TERRA. | en |
dc.description.provenance | Submitted by admin ntu (admin@lib.ntu.edu.tw) on 2024-08-16T17:32:23Z No. of bitstreams: 0 | en |
dc.description.provenance | Made available in DSpace on 2024-08-16T17:32:23Z (GMT). No. of bitstreams: 0 | en |
dc.description.tableofcontents | 論文口試委員會審定書 i
誌謝 ii 中文摘要 iii Abstract iv Content v Content of figure viii Content of supplmentary figure ix Content of tables x Chapter 1 Introduction 1 Chapter 2 Material and Method 6 2-1 Cell culture 6 2-2 Thymidine synchronization 7 2-3 Nucleofector for TERRA silencing 7 2-4 Flow cytometry with propidium iodide staining 8 2-5 Staining 8 2-5-1 Immuno-Fluorescence (IF) 9 2-5-2 Fluorescence in situ hybridization (FISH) 10 2-5-3 Proximity ligation assay (PLA) 11 2-6 Cell phase determination by PCNA staining pattern 13 2-6-1 Image acquisition 14 2-6-2 Image processing 14 2-6-3 Model training and validation 15 2-6-4 Quantification of TERRA intensity 16 2-6-5 Counting spots and colocalization 16 2-7 RNA extraction 17 2-8 cDNA synthesis 18 2-9 Quantitative PCR 18 Chapter 3 Results 20 3-1 High TERRA expression occurs in middle and late S phases 20 3-2 POT1 highly locates at telomeres in late S phase 22 3-3 CST complex predominantly localizes at telomeres during late S phase 23 3-4 Telomerase at telomeres decreases after TERRA depletion 24 3-5 Increased interactions between TERRA and POT1, as well as TERRA and STN1 in late S phase 24 Chapter 4 Discussions 26 Chapter 5 Supplementary data 47 Chapter 6 References 61 Abbreviations 67 | - |
dc.language.iso | en | - |
dc.title | TERRA, POT1和CST complex在細胞週期的調控 | zh_TW |
dc.title | The regulation of TERRA, POT1 and CST complex during cell cycle progression | en |
dc.type | Thesis | - |
dc.date.schoolyear | 112-2 | - |
dc.description.degree | 碩士 | - |
dc.contributor.oralexamcommittee | 謝佳龍;陳律佑;冀宏源 | zh_TW |
dc.contributor.oralexamcommittee | Chia-Lung Hsieh;Liuh-Yow Chen;Hung-Yuan Chi | en |
dc.subject.keyword | TERRA,POT1,CST複合物,端粒維護, | zh_TW |
dc.subject.keyword | TERRA,POT1,CST complex,Telomere maintenance, | en |
dc.relation.page | 69 | - |
dc.identifier.doi | 10.6342/NTU202403457 | - |
dc.rights.note | 未授權 | - |
dc.date.accepted | 2024-08-13 | - |
dc.contributor.author-college | 生命科學院 | - |
dc.contributor.author-dept | 分子與細胞生物學研究所 | - |
顯示於系所單位: | 分子與細胞生物學研究所 |
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