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| DC 欄位 | 值 | 語言 |
|---|---|---|
| dc.contributor.advisor | 歐海仁 博士 | zh_TW |
| dc.contributor.advisor | Hiran A. Ariyawansa | en |
| dc.contributor.author | Himanshi Jayasinghe | zh_TW |
| dc.contributor.author | Himanshi Jayasinghe | en |
| dc.date.accessioned | 2024-01-26T16:39:16Z | - |
| dc.date.available | 2024-01-27 | - |
| dc.date.copyright | 2024-01-26 | - |
| dc.date.issued | 2024 | - |
| dc.date.submitted | 2024-01-18 | - |
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The composition and assembly of bacterial communities across the rhizosphere and phyllosphere compartments of Phragmites Australis. Diversity 11, 98. doi: 10.3390/d11060098. Zhu, Y., Xiong, C., Wei, Z., Chen, Q., Ma, B., Zhou, S., et al. (2022). Impacts of global change on the phyllosphere microbiome. New Phytol. 234, 1977–1986. doi: 10.1111/nph.17928. Zimmerman, N., Izard, J., Klatt, C., Zhou, J., and Aronson, E. (2014). The unseen world: environmental microbial sequencing and identification methods for ecologists. Front. Ecol. Environ. 12, 224–231. doi: 10.1890/130055. | - |
| dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/91472 | - |
| dc.description.abstract | None | zh_TW |
| dc.description.abstract | Plants are associated with a large diversity of microbes, and these complex plant-associated microbial communities are critical for plant health. Welsh onion (Allium fistulosum L.) holds a significant place as one of the oldest and key vegetable crops cultivated in Taiwan. The leaf of the Welsh onion is one of the famous spices in Taiwanese cuisine, thus, it is crucial to control foliar diseases. In recent years, Welsh onion cultivation in Taiwan has been severely threatened by the occurrence of leaf blight disease, greatly affecting their yield and quality. However, the overall picture of microbiota associated with the Welsh onion plant is still not clear as most of the recent etiological investigations were heavily based on the isolation of microorganisms from diseased plants. Therefore, studying the diversity of fungal communities associated with the leaf blight symptoms of Welsh onion may provide information regarding key taxa possibly involved in the disease. This investigation was primarily designed to understand the key fungal communities associated with leaf blight and to identify major taxa involved in the disease. Additionally, the present study aimed to discover potentially beneficial fungi in asymptomatic plants and further evaluate any shifts in both phyllosphere and rhizosphere mycobiome assembly due to foliar pathogen infection. Amplicon sequencing targeting the Internal Transcribed Spacer (ITS) 1 region of rRNA was employed for these analyses. The alpha and beta-diversities analyses were used to compare the fungal communities and significant fungal groups were recognized based on linear discriminant analyses. Based on the results of relative abundance data and co-occurrence networks in symptomatic plants, the present study revealed that the leaf blight of Welsh onion in Sanxing, Taiwan is a disease complex mainly involving Stemphylium and Colletotrichum taxa. Additionally, fungal genera such as Aspergillus, Athelia and Colletotrichum were abundantly found associated with the symptomatic rhizosphere. Furthermore, genera such as Chaetomium, Hannaella, and Itersonilia were identified from the leaves of asymptomatic plants. Alpha diversity in some fields indicated a significant increase in species richness in the symptomatic phyllosphere compared to the asymptomatic phyllosphere. These results will enhance our knowledge of pathogens of Welsh onion associated with leaf blight symptoms and potential biocontrol agents and will assist in developing effective disease management strategies to control the progress of the disease. | en |
| dc.description.provenance | Submitted by admin ntu (admin@lib.ntu.edu.tw) on 2024-01-26T16:39:16Z No. of bitstreams: 0 | en |
| dc.description.provenance | Made available in DSpace on 2024-01-26T16:39:16Z (GMT). No. of bitstreams: 0 | en |
| dc.description.tableofcontents | Acknowledgments i
Abstract ii TABLE OF CONTENTS iv LIST OF TABLES vi LIST OF FIGURES vii 1. Introduction 1 1.1 Background 1 1.2 Plant microbiome 3 1.3 Benefits of plant microbiome 6 1.4 Factors affecting plant microbiome 7 1.4.1 Effects of climate 7 1.4.2 Effect of agricultural practices 8 1.4.3 Effect of plant genotype 10 1.4.4 Effect of pathogens 11 1.5 Manipulation of plant microbiome and biocontrol strategies 13 1.6 Study of plant microbiome 15 1.6.1 Culture dependent techniques 15 1.6.2 Culture independent techniques 15 1.7 Welsh onion 17 1.7.1 Foliar diseases of Welsh onion 17 1.7.2 Management of foliar diseases of Welsh onion 18 1.7.3 Welsh onion associated microbes and its microbiome 19 1.8 Aims of the study 21 2. Materials and methods 22 2.1 Sample collection and preprocessing 22 2.2 Total DNA extraction and amplicon sequencing 25 2.3 Sequence data processing 27 3. Results 31 3.1 Quality assessment by FASTQC tool 31 3.2 Optimization of DNA extraction protocol 32 3.3 Fungal community differences in leaves of asymptomatic and symptomatic Welsh onion plants 32 3.4 Fungal community differences in rhizosphere of asymptomatic and symptomatic Welsh onion plants 43 4. Discussion 52 5. Conclusion 64 6. References 65 7. Appendix 98 | - |
| dc.language.iso | en | - |
| dc.title | 探討臺灣有無感染葉部病徵之青蔥微生物相分析 | zh_TW |
| dc.title | Mycobiome profiling of asymptomatic and symptomatic Welsh onion naturally infected by the leaf blight pathogens in Taiwan | en |
| dc.type | Thesis | - |
| dc.date.schoolyear | 112-1 | - |
| dc.description.degree | 碩士 | - |
| dc.contributor.oralexamcommittee | 張皓巽 博士;楊姍樺 博士;劉勃佑 博士 | zh_TW |
| dc.contributor.oralexamcommittee | Hao-Xun Chang;Shan Hua Yang;Po-Yu Liu | en |
| dc.subject.keyword | α多樣性,擴增子定序,β多樣性,共現網絡,微生物相,葉圏,根際, | zh_TW |
| dc.subject.keyword | alpha diversity,amplicon sequencing,beta diversity,co-occurrence networks,microbiota,phyllosphere,rhizosphere, | en |
| dc.relation.page | 111 | - |
| dc.identifier.doi | 10.6342/NTU202400086 | - |
| dc.rights.note | 同意授權(限校園內公開) | - |
| dc.date.accepted | 2024-01-19 | - |
| dc.contributor.author-college | 生物資源暨農學院 | - |
| dc.contributor.author-dept | 植物病理與微生物學系 | - |
| 顯示於系所單位： | 植物病理與微生物學系 | |
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