Please use this identifier to cite or link to this item:
http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/91242Full metadata record
| ???org.dspace.app.webui.jsptag.ItemTag.dcfield??? | Value | Language |
|---|---|---|
| dc.contributor.advisor | 陳國勤 | zh_TW |
| dc.contributor.advisor | Benny Kwok-Kan Chan | en |
| dc.contributor.author | 李旻憲 | zh_TW |
| dc.contributor.author | Min-Hsien Lee | en |
| dc.date.accessioned | 2023-12-12T16:22:12Z | - |
| dc.date.available | 2023-12-13 | - |
| dc.date.copyright | 2023-12-12 | - |
| dc.date.issued | 2023 | - |
| dc.date.submitted | 2023-10-16 | - |
| dc.identifier.citation | Agapow, P., O. Bininda-Emonds, K. Crandall, J. Gittleman, G. Mage, J. Marshall, and A. Purvis. 2004. The impact of species concept on biodiversity. Quarterly Review of Biology, 79:161 – 179.
Aldhebiani, A. Y. 2018. Species concept and speciation. Saudi Journal of Biological Sciences, 25:437 – 440 Annandale, N. 1909. An account of the Indian Cirripedia Pedunculata part. 1, Family Lepadidae (sensu stricto). Records of the Indian Museum, 2:61 – 137. Arnaud, P. M. 1973. Le genre Lepas Linné, 1758, dans les Terres Australes et Antarctiques Françaises (Cirripedia). Crustaceana, 24:157 – 162. Ashton, G. V., I. C. Davidson, J. Geller, and G. M. Ruiz. 2016. Disentangling the biogeography of ship biofouling: barnacles in the Northeast Pacific. Global Ecology and Biogeography, 25: 739 – 750. Aurivillius, C. W. S. 1892. Neue Cirripeden aus dem Atlantischen, Indischen and Stillen Ocean. Kungliga Vetenskaps-Akademien Forhandlingar Stockholm, 3:123 – 134. Aurivillius, C. W. S. 1894. Studien über Cirripeden. K. Boktryckeriet, P. A. Norstedt & Söner, Stockholm, Vol. 2. pp1 – 17. Avise, J. C. 2004. Molecular Markers, Natural History, and Evolution. Sinauer, Sunderland, Massachusetts, U.S.A. 684pp. Baek, Y. S., G. S. Min, S. Kim, and H. G. Choi. 2016. Complete mitochondrial genome of the Antarctic barnacle Lepas australis (Crustacea, Maxillopoda, Cirripedia). Mitochondrial DNA Part A, 27:1677 – 1678. Bastrop, R., M. Röhner, C. Sturmbauer, and K. Jürss. 1997. Where did Marenzelleria spp. (Polychaeta: Spionidae) in Europe come from? Aquatic Ecology, 31:119 – 136. Bastrop, R., K. Jürss, and C. Sturmbauer. 1998. Cryptic species in a marine polychaete and their independent introduction from North America to Europe. Molecular Biology and Evolution, 15:97 – 103. Beaumont, A. 1994. Genetics and Evolution of Aquatic Organisms. Springer Science and Business Media, London. 539pp. Bennett, K., and L. Hiebert. 2009. Complex life cycles of common marine invertebrates. Science Activities: Classroom Projects and Curriculum Ideas, 46:18 – 25. Bick, A. 2005. A new Spionidae (Polychaeta) from North Carolina, and a redescription of Marenzelleria wireni Augener, 1913, from Spitsbergen, with a key for all species of Marenzelleria. Helgoland Marine Research, 59:265 – 272. Bick, A., M. L. Zettler. 1997. On the identity and distribution of two species of Marenzelleria in Europe and North America. Aquatic Ecology, 31:137 – 148. Bisby, F. A. and J. Coddington. 1995. Biodiversity from a taxonomic and evolutionary perspective. In: Heywood, V.H., Watson, R.T. (Eds.), Global Biodiversity Assessment. Cambridge University Press, Cambridge, U.K. pp27 – 56. Borradaile, L. A. 1916. Crustacea, Part III. Cirripedia. In: British Antarctic (“Terra Nova”) Expedition, 1910. Natural History Reports Zoology, volume III. pp127 – 136. Borradaile, L. A. 1917. XVIII.—Barnacles from the hull of the ‘Terra Nova’: a note. Annals and Magazine of Natural History, Series 8, 19:229 – 230. Bruguière, M. 1789. Encyclopedie methodique: Histoire naturelle des Vers, 1:158 – 173. Buckeridge, J. S. 1979. The fossil barnacles (Cirripedia: Thoracica) of New Zealand and Australia. The University of Auckland, Auckland, New Zealand. 151pp. Cain, A. J. 1958. Logic and memory in Linnaeus’ system of taxonomy. Proceeding of the Linnean Society of London, 169:144 – 63. Carton, J. A., and E. J. Katz. 1990. Estimates of the zonal slope and seasonal transport of the Atlantic North Equatorial Countercurrent. Journal of Geophysical Research-Oceans, 95:3091 – 3100. Cerca, J., C. Meyer, G. Purschke, and T. H. Struck. 2020. Delimitation of cryptic species drastically reduces the geographical ranges of marine interstitial ghost-worms (Stygocapitella; Annelida, Sedentaria). Molecular Phylogenetics and Evolution, 143:106663. doi:10.1016/j.ympev.2019.106663 Chan, B. K. K., H. N. Chen, and J. Y. Yu. 2013. New species of barnacles associated with antipatharian corals of the genus Oxynaspis Darwin, 1852 (Crustacea, Cirripedia, Lepadiformes) from the Philippines and Taiwan. In: Ahyong, S.T. et al. (Eds.) Tropical Deep-Sea Benthos 27. Mémoires du Muséum national d'Histoire naturelle (1993). Scientifiques du Muséum: Paris. 204: 67-84 Chan, B. K. K., N. Dreyer, A. S. Gale, H. Glenner, C. Ewers-Saucedo, M. Perez-Losada, G. A. Kolbasov, K. A. Crandall, and J. T. Hoeg. 2021. Evolutionary diversity of barnacles, with an updated classification of fossil and living forms. Zoological Journal of the Linnean Society, 193:789 – 846. Chan, B. K. K., A. Garm, and J. T. Høeg. 2008. Setal morphology and cirral setation of thoracican barnacle cirri: adaptations and implications for thoracican evolution. Journal of Zoology, 275:294 – 306. Chan, B. K. K., P. Romanus, and K. S. Lee. 2009. Crustacean Fauna of Taiwan: Barnacles, Volume 1: Cirripedia: Thoracica Excluding the Pyrgomatidae and Acastinae. National Taiwan Ocean University, Keelung, Taiwan. 297pp. Chan, B. K. K., L. M. Tsang, and K. H. Chu. 2007. Morphological and genetic differentiation of the acorn barnacle Tetraclita squamosa (Crustacea, Cirripedia) in East Asia and description of a new species of Tetraclita. Zoologica Scripta, 36:79 – 91. Chan, B. K. K., Y.-F. Tsao, K. Wangkulangkul, K. Amjud, and W. Sukparangsi. 2022. Biogeography and biodiversity of the intertidal barnacle Tetraclita Species in the Gulf of Thailand and Andaman Sea – influences of oceanographic currents and pleistocene glaciations. Frontiers in Marine Science, 8. Cheang, C. C., L. M. Tsang, W. C. Ng, G. A. Williams, K. H. Chu, and B. K. K. Chan. 2012. Phylogeography of the cold-water barnacle Chthamalus challengeri in the north-western Pacific: effect of past population expansion and contemporary gene flow. Journal of Biogeography, 39:1819 – 1835. Chen, H. N., J. T. Høeg, and B. K. K. Chan. 2013. Morphometric and molecular identification of individual barnacle cyprids from wild plankton: an approach to detecting fouling and invasive barnacle species. Biofouling, 29:133 – 145. Cheng, L., and R. A. Lewin. 1976. Goose barnacles (Cirripedia: Thoracica) on Flotsam Beached at La-Jolla, California. Fishery Bulletin, 74:212 – 217. Claridge, M. F., H. A. Dawah, and M. R. Wilson. 1997. Species: the units of biodiversity. Chapman and Hall, London. 439pp. Colgan, D. J., A. McLauchlan, G. D. F. Wilson, S. P. Livingston, G. D. Edgecombe, J. Macaranas, G. Cassis and M. R. Gray. 1998. Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution. Australian Journal of Zoology, 46:419 – 437. Cornwall, I. E. 1925. No. 18: A review of the cirripedia of the coast of British Columbia, with glossary, and key to genera and species. Contributions to Canadian Biology and Fisheries, 2a:469 – 502. Cronquist, A. 1978. Once again, what is a species? In: Knutson, L.V. (Ed.), Biosystematics in Agriculture. Allenheld Osmin, Montclair, New Jersey, U.S.A. pp3 – 20. Cushman-Roisin, B., and J.-M. Beckers. 2011. Introduction to geophysical fluid dynamics: physical and numerical aspects. Academic Press, Cambridge, USA. 768pp. Da Costa, E. 1778. Historia naturalis testaceorum Britanniæ, or the British conchology. Da Costa, E, Millan, B. White, Elmsley, and Robson, London. 254pp. Darriba, D., G. L. Taboada, R. Doallo, and D. Posada. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nature Methods, 9:772 – 772. Darwin, C. 1851. A monograph on the sub-class Cirripedia, with figures of all the species. The Lepadidae; or, pedunculated cirripedes. The Ray Society, London. 400pp. DE Graaf, F. 1952. Some notes on the genus Lepas Linné, 1767. (Subphylum Crustacea; Classis Cirripedia; Ordo Thoracica; Fam. Lepadidae.). Beaufortia, 1:1 – 6. Donoghue, M. J. 1985. A Critique of the biological species concept and recommendations for a phylogenetic alternative. The Bryologist, 88:172 – 181. Ekman, V. W. 1905. On the influence of the earth's rotation on ocean-currents. Arkiv For Matematik, Astronomi Och Fysik, 2:1 – 53. Ewers‐Saucedo, C., J. M. Pringle, H. H. Sepúlveda, J. E. Byers, S. A. Navarrete, and J. P. Wares. 2016. Oceanic concordance of phylogeography and biogeography: a case study in Notochthamalus. Ecology and Evolution, 6:4403 – 4420. Foster, B. A. 1978. Marine fauna of New Zealand: Barnacles (Cirripedia: Thoracica). New Zealand Oceanographic Institute Memoir, 69:1 – 160. Goetze, E. 2011. Population differentiation in the open sea: insights from the pelagic copepod Pleuromamma xiphias. Integrative and Comparative Biology, 51:580 – 597. Govindarajan, A. F., S. Piraino, C. Gravili, and S. Kubota. 2005. Species identification of bivalve‐inhabiting marine hydrozoans of the genus Eugymnanthea. Invertebrate Biology, 124:1 – 10. Gray, J. E. 1825. A synopsis of the genera of Cirripedes arranged in natural families, with a description of some new species. Annals of Philosophy, 10:97 – 107. Grene, M., E. Mendelsohn, and E. Mayr. 1976. Species concepts and definitions. In: Topics in the Philosophy of Biology, volume 27. D. Reidel Publishing Company, Dordrecht, Holland. pp353 – 371. Gruvel, A. 1900. Sur une espèce nouvelle du genre Lepas Linné. In: Bulletin du Muséum d'histoire Naturelle. Paris Imprimerie Nationale, Paris. pp241 – 242. Gruvel, A. 1905. Monographie des Cirrhipèdes ou Thécostracés. Masson et cie, Paris. 472pp. Hausdorf, B. 2011. Progress toward a general species concept. Evolution, 65:923 – 931. Hebert, P. D., S. Ratnasingham, and J. R. De Waard. 2003. Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proceedings of the Royal Society of London. Series B: Biological Sciences, 270:S96 – S99. Henry, D. P. 1940. Notes on some pedunculate barnacles from the North Pacific. Proceedings of the United States National Museum, 88:225 – 236. Hinojosa, I., S. Boltana, D. Lancellotti, E. Macaya, P. Ugalde, N. Valdivia, N. Vasquez, W. A. Newman, and M. Thiel. 2006. Geographic distribution and description of four pelagic barnacles along the south east Pacific coast of Chile—a zoogeographical approximation. Revista Chilena de Historia Natural, 79:13 – 27. Hiro, F. 1937. Studies on Cirripedian Fauna of Japan (II) : Cirripeds found in the vicinity of the Seto Marine Biological Laboratory. Memoirs of the College of Science, Kyoto Imperial University, Series B, 12:385 – 478. Hoang, D. T., O. Chernomor, A. Von Haeseler, B. Q. Minh, and L. S. Vinh. 2018. UFBoot2: improving the ultrafast bootstrap approximation. Molecular Biology and Evolution, 35:518 – 522. Hoek, P. P. C. 1907. Pedunculata. Cirripedia of the Siboga-expedition. Siboga Expeditie, Monograph, 31a:1 – 127. Isaac, N. J., J. Mallet, and G. M. Mace. 2004. Taxonomic inflation: its influence on macroecology and conservation. Trends in ecology and evolution, 19:464 – 469. Jennings, L. S. 1915. Art. XXX. Pedunculate Cirripedia of New Zealand and Neighbouring. Transactions and Proceedings of the New Zealand Institute, 47:285 – 293 Jennings, L. S. 1918. Revision of the Cirripedia of New Zealand. Transactions of the Royal Society of New Zealand, 50:56 – 63 Jones, D. S. 2012. Australian Barnacles (Cirripedia: Thoracica), distributions and biogeographical affinities. Integrative and Comparative Biology, 52:366 – 387. Jones, D. S., J. T. Anderson, and D. T. Anderson. 1990. Checklist of the Australian Cirripedia. Technical Reports of the Australian Museum, 3:1 – 38. Kamio, M., M. A. Reidenbach, and C. D. Derby. 2008. To paddle or not: context dependent courtship display by male blue crabs, Callinectes sapidus. Journal of Experimental Biology, 211:1243 – 1248. Katoh, K., J. Rozewicki, and K. D. Yamada. 2019. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics, 20:1160 – 1166. Kennett, J. P., G. Keller, and M. S. Srinivasan. 1985. Miocene planktonic foraminiferal biogeography and pale-oceanographic development of the Indo-Pacific region. In: The Miocene Ocean: Paleoceanography and biogeography. Colorado Geologic Society of America, Boulder, Colorado, U.S.A. 163:197 – 236. Kumar, S., G. Stecher, M. Li, C. Knyaz, and K. Tamura. 2018. MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. Molecular Biology And Evolution, 35:1547 – 1549. Kuraku, S., C. M. Zmasek, O. Nishimura, and K. Katoh. 2013. aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity. Nucleic acids research, 41:W22 – W28. Lathlean, J. A., D. J. Ayre, and T. E. Minchinton. 2010. Supply-side biogeography: geographic patterns of settlement and early mortality for a barnacle approaching its range limit. Marine Ecology Progress Series, 412:141 – 150. Leach, W. E., 1818. Appendix No. IV. A general notice of the animals taken by Mr. John Cranch, during the expedition. In: Tuckey, J. H. & Smith, C. Narrative of an expedition to explore the river Zaire, usually called the Congo, in South Africa, in 1816. J. Murray, London. pp407 – 419. Lin, H. C., J. T. Hoeg, Y. Yusa, and B. K. K. Chan. 2015. Origins and evolution of dwarf males and habitat use in thoracican barnacles. Molecular Phylogenetics and Evolution, 91:1 – 11. Linnaeus, C. 1758. Systema naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis. Tomus I. Editio decima, reformata. Laurentii Salvii, Holmiae. 824pp. Linnaeus, C. 1767. Systema naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis. Pars II. Editio duodecima, reformata. Laurentii Salvii, Holmiae. pp533 – 1372. Liu, R.-Y., and X.-Q. Ren. 1985. Studies on Chinese Cirripedia (Crustacea). VI. Suborder Lepadomorpha. Studia Marina Sinica, 25:179 – 281. (in Chinese) Lobo, J., and M. Tuaty-Guerra. 2017. A new deep-sea Cirripedia of the genus Heteralepas from the northeastern Atlantic. European Journal of Taxonomy, 385:1 – 14. Matsuzaki, K. M., T. Itaki, R. Tada, and S.-i. Kamikuri. 2018. Paleoceanographic history of the Japan Sea over the last 9.5 million years inferred from radiolarian assemblages (IODP Expedition 346 Sites U1425 and U1430). Progress in Earth and Planetary Science, 5:54. Mayr, E. 1942. Systematics and the origin of species. Columbia University Press, New York, U.S.A. 334pp. Mayr, E. 1982. The Growth of Biological Thought: Diversity, Evolution, and Enheritance. Harvard University Press, Cambridge, Massachusetts. 974pp. Memmi, M. 1980. A new subgenus and species of the genus Lepas (Crustacea, Cirripedia). Zoological Zhurnal (Russia), 59:948 – 950. Memmi, M. 1982. Revision of Lepas anatifera crustacea cirripedia. Zoologicheskii Zhurnal (Russia), 61:1165 – 1170. Mesaglio, T. P., H. T. Schilling, L. Adler, S. T. Ahyong, B. Maslen, and I. M. Suthers. 2021. Ecology of Lepas-based biofouling communities on moored and drifting objects, with applications for marine forensic science. Marine Biology, 168:21. Miralles, L., M. Gomez-Agenjo, F. Rayon-Viña, G. Gyraitė, and E. Garcia-Vazquez. 2018. Alert calling in port areas: Marine litter as possible secondary dispersal vector for hitchhiking invasive species. Journal for Nature Conservation, 42:12 – 18. Newman, W. A. 1972. Lepadids from the Caroline Islands (Cirripedia Thoracica). Crustaceana, 22:31 – 38. Newman, W. A. 1996. Sous-Classe des Cirripèdes (Cirripedia Burmeister, 1834). Super-Ordres des Thoraciques et des Acrothoraciques (Thoracica Darwin, 1854 – Acrothoracica Gruvel, 1905). In: Forest, J. (ed) Zoological Treatise. Anatomy, Systematics, Biology. Vol. 7: Crustacea. Part 2: General Information (Continuation) and Systematics. Masson Paris, Milan/Barcelona, pp453 – 540. Newman, W. A., and D. P. Abbott. 1980. Cirripedia: the barnacles. Intertidal Invertebrates of California, 200:504 – 535. Newman, W. A., and A. Ross. 1971. Antarctic Cirripedia. Antarctic Research Series. Vol. 14. In: Antarctic Research Series. American Geophysical Union, Washington DC, U.S.A. pp29 – 34. Nguyen, L. T., H. A. Schmidt, A. Von Haeseler, and B. Q. Minh. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution, 32:268 – 274. Nilsson-Cantell, C. A. 1921. Cirripeden-Studien: zur Kenntnis der Biologie, Anatomie und Systematik dieser Gruppe. Almqvist & Wiksells boktryckeri-A.-B, Uppsala, Sweden. 390pp. Nilsson‐Cantell, C. A. 1927. Some barnacles in the British Museum (Natural Histroy). Proceedings of the Zoological Society of London, 1927:743 – 790. Nilsson-Cantell, C. A. 1928. Studies on Cirripeds in the British Museum (Natural History). Annals and Magazine of Natural History Museum, Series 10. 2:1 – 39. Norris, R. D. 2000. Pelagic species diversity, biogeography, and evolution. Paleobiology, 26:236 – 258. Norton, E. L., and E. Goetze. 2013. Equatorial dispersal barriers and limited population connectivity among oceans in a planktonic copepod. Limnology and Oceanography, 58:1581 – 1596. Pechenik, J. A. 1999. On the advantages and disadvantages of larval stages in benthic marine invertebrate life cycles. Marine Ecology Progress Series, 177:269 – 297. Pfingstl, T., A. Lienhard, J. Baumann, and S. Koblmüller. 2021. A taxonomist‘s nightmare–Cryptic diversity in Caribbean intertidal arthropods (Arachnida, Acari, Oribatida). Molecular Phylogenetics and Evolution, 163:107240 Pilsbry, H. A. 1907. Barnacles (Cirripedia) contained in the collection of the U. S. National Museum. Bulletin of the United States National Museum, 60:1 – 122. Pilsbry, H. A. 1911. Barnacles of Japan and Bering Sea. Bulletin of the Bureau of Fisheries, 29:59 – 84. Pitriana, P., L.Valente, T. von Rintelen, D. S. Jones, R. E. Prabowo and K. von Rintelen. 2020. An annotated checklist and integrative biodiversity discovery of barnacles (Crustacea, Cirripedia) from the Moluccas, East Indonesia. ZooKeys, 945:17. Puillandre, N., S. Brouillet, and G. Achaz. 2021. ASAP: assemble species by automatic partitioning. Molecular Ecology Resources, 21:609 – 620. Puillandre, N., A. Lambert, S. Brouillet, and G. Achaz. 2012. ABGD, Automatic Barcode Gap Discovery for primary species delimitation. Molecular Ecology, 21:1864 – 1877. Qiu, B. 2019. Kuroshio and Oyashio Currents. In: J. K. Cochran, H. J. Bokuniewicz, and P. L. Yager, editors. Encyclopedia of Ocean Sciences (Third Edition). Academic Press, Oxford. pp384 – 394. Quinteiro, J., J. Rodríguez-Castro, and M. Rey-Méndez. 2007. Population genetic structure of the stalked barnacle Pollicipes pollicipes (Gmelin, 1789) in the northeastern Atlantic: influence of coastal currents and mesoscale hydrographic structures. Marine Biology, 153:47 – 60. Quoy, J. R. E., and J. P. Gaimard. 1834. Voyage de découvertes de l'Astrolabe. Zoologie 3, 627 – 643. Rannala, B., and Z. Yang. 2020. Chapter No. 5.5, Species Delimitation. In: C. Scornavacca, F. Delsuc, and N. Galtier, editors, Phylogenetics in the Genomic Era. pp 5.5:1 – 5.5:18. Online resource available at: https://hal.inria.fr/PGE Rawson, P. D., R. Macnamee, M. G. Frick, and K. L. Williams. 2003. Phylogeography of the coronulid barnacle, Chelonibia testudinaria, from loggerhead sea turtles, Caretta caretta. Molecular Ecology, 12:2697 – 2706. Rech, S., Y. J. B. Pichs, and E. García-Vazquez. 2018a. Anthropogenic marine litter composition in coastal areas may be a predictor of potentially invasive rafting fauna. PloS One, 13:e0191859. Rech, S., S. Salmina, Y. J. B. Pichs, and E. García-Vazquez. 2018b. Dispersal of alien invasive species on anthropogenic litter from European mariculture areas. Marine pollution bulletin, 131:10 – 16. Rech, S., M. Thiel, Y. J. B. Pichs, and E. García-Vazquez. 2018c. Travelling light: Fouling biota on macroplastics arriving on beaches of remote Rapa Nui (Easter Island) in the South Pacific Subtropical Gyre. Marine Pollution Bulletin, 137:119 – 128. Ronquist, F., M. Teslenko, P. van der Mark, D. L. Ayres, A. Darling, S. Höhna, B. Larget, L. Liu, M. A. Suchard, and J. P. Huelsenbeck. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61:539 – 542. Rosell, N. C. 1986. Philippine Barnacle. In: Guide to Philippine flora and fauna. Vol. 7. Natural Resources Management Center, Ministry of Natural Resources & Unversity of the Philippines, Quezon, Manila, Philippines. pp1 – 163. Schiffer, P. H., and H. G. Herbig. 2016. Endorsing Darwin: global biogeography of the epipelagic goose barnacles Lepas spp. (Cirripedia, Lepadomorpha) proves cryptic speciation. Zoological Journal of the Linnean Society, 177:507 – 525. Sigler, K. 2016. Barnacles. Business and Economics Journal, 7:218 Sikorski, A. V., and A. Bick. 2004. Revision of Marenzelleria Mesnil, 1896 (Spionidae, Polychaeta). Sarsia, 89:253 – 275. Simon-Blecher, N., Z. Granevitze, and Y. Achituv. 2008. Balanus glandula: from North-West America to the west coast of South Africa. African Journal of Marine Science, 30:85 – 92. Singh, B. N. 2012. Concepts of species and modes of speciation. Current Science, 103:784 – 790. Sites Jr, J. W., and J. C. Marshall. 2004. Operational criteria for delimiting species. Annual Review of Ecology, Evolution, and Systematics, 35:199 – 227. Spalding, M. D., V. N. Agostini, J. Rice, and S. M. Grant. 2012. Pelagic provinces of the world: A biogeographic classification of the world's surface pelagic waters. Ocean & Coastal Management, 60:19 – 30. Spengler, L. 1793. Beskrivelse over tvende nye Arter af Lepas, tilligemed nogle Anmærkninger over Lepades, som findes i Naturhistorie-Selskabets Skrivters. Skrivter af Naturhistorie-Selskabet, 2:103 – 110. Staaf, D. J., R. I. Ruiz-Cooley, C. Elliger, Z. Lebaric, B. Campos, U. Markaida, and W. F. Gilly. 2010. Ommastrephid squids Sthenoteuthis oualaniensis and Dosidicus gigas in the eastern Pacific show convergent biogeographic breaks but contrasting population structures. Marine Ecology Progress Series, 418:165 – 178. Struck, T. H., J. Koczula, D. Stateczny, C. Meyer, and G. Purschke. 2017. Two new species in the annelid genus Stygocapitella (Orbiniida, Parergodrilidae) with comments on their biogeography. Zootaxa, 4286:301 – 332. Swart, B. L., A. E. Bester-van der Merwe, S. E. Kerwath, and R. Roodt-Wilding. 2016. Phylogeography of the pelagic fish Seriola lalandi at different scales: confirmation of inter-ocean population structure and evaluation of southern African genetic diversity. African Journal of Marine Science, 38:513 – 524. Szmant, A.M., E. Weil, M.W. Miller, and D.E. Colon. 1997. Hybridization within the species complex of Montastraea annularis. Marine Biology, 129:561 – 572. Thiel, M., and L. Gutow. 2005. Ecology of rafting in the marine environment. II. The rafting organisms and community. Oceanography and Marine Biology, 43:279 – 418. Thorson, G. 1950. Reproductive and larval ecology of marine bottom invertebrates. Biological Reviews, 25:1 – 45. Tsang, L. M., Y. Achituv, K. H. Chu, and B. K. K. Chan. 2012a. Zoogeography of intertidal communities in the West Indian Ocean as determined by ocean circulation systems: Patterns from the Tetraclita barnacles. PLoS ONE, 7:e45120. Tsang, L. M., B. K. K. Chan, K. Y. Ma, and K. H. Chu. 2008. Genetic differentiation, hybridization and adaptive divergence in two subspecies of the acorn barnacle Tetraclita japonica in the northwestern Pacific. Molecular Ecology, 17:4151 – 4163. Tsang, L. M., T. H. Wu, H. T. Shih, G. A. Williams, K. H. Chu, and B. K. K. Chan. 2012b. Genetic and morphological differentiation of the Indo-West Pacific intertidal barnacle Chthamalus malayensis. Integrative and Comparative Biology, 52:388 – 409 Uzun, D., R. Ozyurt, Y. K. Demirel, and O. Turan. 2020. Does the barnacle settlement pattern affect ship resistance and powering? Applied Ocean Research, 95:102020. Van Der Bank, F., R. Stewart, M. Pilusa, B. Bezeng, J. Hoeg, and P. Schiffer. 2021. Lepas lalandii sp. nov: A Goose Barnacle (Crustacea) Species from DNA Barcoding. International Journal of Oceanography & Aquaculture, 5:000209. Van Syoc, R. 2009. Part 23. Barnacles. In: Marine Biodiversity of Costa Rica, Central America. Springer Science & Business Media, Germany. pp283 – 289. Voris, H. K. 2000. Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems and time durations. Journal of Biogeography, 27:1153 – 1167. White, B. N. 1994. Vicariance biogeography of the open-ocean Pacific. Progress in Oceanography, 34:257 – 284. Whitehead, T. O., A. Biccard, and C. L. Griffiths. 2011. South African pelagic goose barnacles (Cirripedia, Thoracica): substratum preferences and influence of plastic debris on abundance and distribution. Crustaceana, 84:635 – 649. Wyrtki, K., and G. Eldin. 1982. Equatorial upwelling events in the Central Pacific. Journal of Physical Oceanography, 12:984 – 988. Yamindago, A. Speciation on swimming crab callinectes stimpson, 1860 species complex and application of Molecular Markers. 2011. In: Proceedings International Seminar Green Technology, Social Work, and Public Health for the Development of Indonesia, Ramada D'Ma Hotel, Bangkok, Thailand, 28-29 October 2011. ThailandJoint Embassy of the RI Ministry of National Education of the RI, Indonesian Student Association in Thailand, Bangkok, Thailand, pp102 – 104. Young, P. S. 1990. Lepadomorph cirripeds from the Brazilian coast. I.—Families Lepadidae, Poecilasmatidae and Heteralepadidae. Bulletin of Marine Science, 47:641 – 655. Zardus, J. D., D. T. Lake, M. G. Frick, and P. D. Rawson. 2014. Deconstructing an assemblage of “turtle” barnacles: species assignments and fickle fidelity in Chelonibia. Marine Biology, 161:45 – 59. Zevina, G. B. 1982. Barnacles of the Suborder Lepadomorpha (Cirripedia, Thoracica) of the world Ocean II. Fauna SSSR (Russia), 133:1 – 223. Zhang, J., P. Kapli, P. Pavlidis, and A. Stamatakis. 2013. A general species delimitation method with applications to phylogenetic placements. Bioinformatics, 29:2869 – 2876. Zullo, V. A. 1973. A Late Miocene record of Lepas Linnaeus (Cirripedia, Lepadidae) from Southern California. In: Contributions in science, vol. 241. Natural History Museum, Los Angeles, U.S.A. pp1 – 6. Zullo, V. A. 1979. Marine flora and fauna of the northeastern United States. Arthropoda: Cirripedia. U.S. Department of Commerce, National Oceanic and Atmospheric Administration, & National Marine Fisheries Service, Washington DC, U.S.A. 29pp. | - |
| dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/91242 | - |
| dc.description.abstract | 茗荷藤壺 (Lepas) 為海洋表層的生物 (epipelagic organism) ，牠們的成體 (adult) 附著於海洋漂流物上，此特性使得茗荷藤壺得以隨著洋流漂流而成為廣泛分佈於世界各個海洋的生物。近年來有研究以COI、16S及18S三個遺傳標記所構成的分子證據指出，茗荷藤壺的族群因為陸地阻礙、洋流流向與洋流表層水溫等地理隔閡效應的影響而分化成區域性的分支 (biogeographic clades) 。然而，西北太平洋海域卻因為只有5隻L. anserifera 採集於日本，而不能有代表性地代表西北太平洋地區的多樣性。本研究以台灣周圍海域的茗荷藤壺標本做分子與形態的綜合分析，以探討茗荷藤壺在台灣周圍海域的多樣性模式。從四個DNA條碼基因 (COI, 16S, 18S and H3) 所構成的親緣關係樹 (phylogenetic trees) 中，本研究發現在台灣茗荷藤壺共可分成四個物種及五個區域性分支 (biogeographic clades)。之前被認為只在美國奧勒岡州 (Oregon) 發現之 L. anatifera (Oregon clade) 也出現在台灣海域，故本論文改稱之為L. anatifera北太平洋分支 (North-Pacific clade)。本論文也鑑定出L. pectinata於西北太平洋的一個新的分支 (NW-Pacific clade) 與一個未知的物種Lepas sp.。L. anatifera的北太平洋分支與L. pectinata的西北太平洋分支可能是受到北太平洋環流 (North Pacific gyre) 與赤道逆流 (Equatorial Countercurrent) 局限而分化。L. anatifera的全球性分支 (Global-clade) 與L. anserifera 也同樣出現在台灣海域，而L. anserifera是唯一未分化的全球性物種 (cosmopolitan species) 。以Assemble Species by Automatic Partitioning (ASAP) 和Bayesian implementation of the Poisson Tree Processes Model (bPTP) 兩種物種界定方法做出的結果也顯示，各個物種內大多數的區性分支之間的差異可能足以視為不同物種，而綜合分子與形態分析後，本研究認為L. anatifera 北太平洋分支與全球性分支可被視為不同物種。此外，未知物種L. sp.在過往曾以外觀特徵被認為是L. testudinata。然而，本研究經由分子證據佐以對過往的文獻記錄做形態上的比對後，認為L. sp.與L. testudinata為不同物種。L. testudinata模式地 (type locality) 於南非，故分佈於南半球的物種為L. testudinata，而本論文採得於西北太平洋的物種可被視為一個未知的新物種L. sp.。 | zh_TW |
| dc.description.abstract | Gooseneck barnacles of the genus Lepas are epipelagic organisms. Their adults attach to ocean-floating objects and can be dispersed by the ocean currents. Lepas barnacles thus have worldwide distributions. Previous studies studied the diversity of Lepas using COI, 16S, and 18S genes and showed that the populations were differentiated into several biogeographic clades which are influenced by vicariance effects of continental isolation, ocean currents, and sea surface temperature (SST). However, the diversity in the Northwest Pacific was understudied because the pattern addressed was based on five L. anserifera specimens collected from Japan. In the present study, extensive Lepas specimens were collected around Taiwan and were analyzed with DNA barcoding genes (COI, 16S, 18S, and H3 genes) and morphological approaches. Compared to previous studies, our study revealed the original Oregon clade of Lepas anatifera is also present in Taiwan waters and we named it as North-Pacific clade. We have identified one more clade of L. pectinata which is distributed in the northern hemisphere of the Pacific. We also identified one unknown, probably new species of Lepas in the NW Pacific. The differentiations of L. anatifera North-Pacific clade and L. pectinata NW-Pacific clade may be caused by the limited gene flow which is affected by the North Pacific gyre and Equatorial Countercurrent. The Taiwan waters also contain the Global clade of L. anatifera and L. anserifera. Only L. anserifera is undifferentiated and is cosmopolitan in the world. The species delimitation results of Assemble Species by Automatic Partitioning (ASAP) and Bayesian Implementation of the Poisson Tree Processes Model (bPTP) also suggested most regional clades of Lepas species may be considered as separate species. According to the combination of morphological analysis and molecular analysis, the North-Pacific clade and Global clade of L. anatifera can be considered as different species. In addition, the undescribed L. sp. identified from the present study was morphologically similar to L. testudinata. However, the present study shows they are different species according to the molecular evidence and historical taxonomic records. L. testudinata was first identified in South Africa, and therefore the L. testudinata in the southern ocean represent the true L. testudinata and the species identified in the Northwest Pacific (morphologically similar to L. testudinata) can be revealed as an undescribed new species. | en |
| dc.description.provenance | Submitted by admin ntu (admin@lib.ntu.edu.tw) on 2023-12-12T16:22:12Z No. of bitstreams: 0 | en |
| dc.description.provenance | Made available in DSpace on 2023-12-12T16:22:12Z (GMT). No. of bitstreams: 0 | en |
| dc.description.tableofcontents | 口試委員會審定書 i
Acknowledgements ii 摘要 iii Abstract v 1. Introduction 1 1.1 Biogeography and phylogeography of barnacles 1 1.2 The pelagic stalked barnacle Lepas 4 1.3 History of taxonomic research in Lepas 4 1.3.1 First identification of the genus Lepas 4 1.3.2 Subgenera of Lepas 5 1.3.3 Valid species of Lepas 7 1.3.4 Species concept and species identities of Lepas 13 1.4 Molecular phylogeny and biodiversity of Lepas 19 1.5 Aim 19 2. Materials and methods 21 2.1 Sampling and preservation of specimens 21 2.2 DNA extraction, PCR, and sequencing 21 2.3 Phylogenetic analysis 22 2.4 Species delimitation 26 2.5 Morphological analysis 27 2.5.1 Specimen groupings 27 2.5.2 Multivariate analysis 28 2.5.3 Morphology of cirri, somatic body, and mouth parts. 29 3. Results 31 3.1 Phylogenetic analysis 31 3.1.1 18S nuclear gene phylogenetic pattern 31 3.1.2 COI, 16S mitochondrial phylogenies and concatenating analysis 32 3.1.3 H3 phylogeny and concatenating analysis of sequences from Taiwan 36 3.2 Species delimitation 38 3.3 Morphological analysis 40 3.3.1 External variances 40 3.3.2 Multivariate analysis 49 3.3.3 Observation of somatic body 50 4. Discussion 64 4.1 Diversity of Lepas 64 4.1.1 Diversity of Lepas in Taiwan 64 4.1.2 Genetic diversity of Lepas 65 4.2 Taxonomic issue of Lepas in Taiwan 72 4.2.1 Global clade and North-Pacific clade of L. anatifera 72 4.2.2 L. anserifera 78 4.2.3 L. pectinata NW-Pacific clade 79 4.2.4 L. sp. 83 Conclusions 87 Reference 89 List of Figures Fig. 1. General characters of Lepas 110 Fig. 2. Sampling locations around the coastline of Taiwan and outlying islands. 111 Fig. 3. Parameters of multivariate analysis for comparing the differences in capitulum shape between between Global clade and North-Pacific clade of L. anatifera. 112 Fig. 4. 18S nuclear gene phylogeny. 113 Fig. 5. 16S mitochondrial phylogeny. 114 Fig. 6. COI and 16S combined mitochondrial phylogeny. 115 Fig. 7. Species delimitation with COI and 18S combined phylogeny. 116 Fig. 8. H3 mitochondrial phylogeny. 117 Fig. 9. COI, 16S, 18S, and H3 combined mitochondrial phylogeny. 118 Fig. 10. External variations of Global clade of L. anatifera. 119 Fig. 11. External variations of North-Pacific clade of L. anatifera. 120 Fig. 12. External variations of L. anserifera. 121 Fig. 13. External variations of L. sp. 122 Fig. 14. External variations of NW-Pacific clade of L. pectinata. 123 Fig. 15. 2-dimensional nMDS ordination plot generated from the 20 parameters displayed in Fig. 3. 124 Fig. 16. Filamentary appendages of L. anatifera Global clade 125 Fig. 17. Cirri I and II of L. anatifera Global clade 126 Fig. 18. Cirri III and IV of L. anatifera Global clade 127 Fig. 19. Cirri V and VI of L. anatifera Global clade 128 Fig. 20. Maxilla, maxillule and mandible of L. anatifera Global clade 129 Fig. 21. Mandible palp and labrum of L. anatifera Global clade 130 Fig. 22. Filamentary appendages of L. anatifera North-Pacific clade 131 Fig. 23. Cirri I and II of L. anatifera North-Pacific clade 132 Fig. 24. Cirri III and IV of L. anatifera North-Pacific clade 133 Fig. 25. Cirri V and VI of L. anatifera North-Pacific clade 134 Fig. 26. Maxilla, maxillule and mandible of L. anatifera North-Pacific clade 135 Fig. 27. Mandible palp and labrum of L. anatifera North-Pacific clade 136 Fig. 28. Filamentary appendages of L. anserifera 137 Fig. 29. Filamentary appendages of L. anserifera 138 Fig. 30. Cirri I and II of L. anserifera 139 Fig. 31. Cirri III and IV of L. anserifera 140 Fig. 32. Cirri V and VI of L. anserifera 141 Fig. 33. Maxilla, maxillule and mandible of L. anserifera. 142 Fig. 34. Mandible palp and labrum of L. anserifera 143 Fig. 35. Filamentary appendages of L. sp. 144 Fig. 36. Filamentary appendages of L. sp. 145 Fig. 37. Cirri I and II of L. sp. 146 Fig. 38. Cirri III and IV of L. sp. 147 Fig. 39. Cirri V and VI of L. sp. 148 Fig. 40. Maxilla, maxillule and mandible of L. sp. 149 Fig. 41. Mandible palp and labrum of L. sp. 150 Fig. 42. Filamentary appendages of L. pectinata NW-Pacific clade. 152 Fig. 43. Cirri I and II of L. pectinata NW-Pacific clade. 153 Fig. 44. Cirri III and IV of L. pectinata NW-Pacific clade 154 Fig. 45. Cirri V and VI of L. pectinata NW-Pacific clade 155 Fig. 46. Maxilla, maxillule and mandible of L. pectinata NW-Pacific clade. 156 Fig. 47. Mandible palp and labrum of L. pectinata NW-Pacific clade. 157 Fig. 48. Comparison of teeth numbers on mandibles of L. pectinata NW-Pacific clade. 158 Fig. 49. Comparison of setal types on distal region of Cirri I and endopodite of Cirri II in Global clade of L. anatifera. 160 Fig. 50. Comparison of setal types on distal region of Cirri I and endopodite of Cirri II in North-Pacific clade of L. anatifera. 162 Fig. 51. The updated diversity of Lepas. 163 List of Tables Table 1. Nomenclature and type status of currently valid Lepas species 164 Table 2. Valid species and molecular information 165 Table 3. Used primers and annealing temperatures 168 Table 4. List of morphotypes and quantities of used specimens in multivariate analysis 169 Table 5. Pairwise distances of COI in Lepas 170 Table 6. Results of multivariate analysis based on parameters in Fig. 3. 171 List of Appendixes Appendix 1. Sample information in the present study. 172 Appendix 2. Reference sample information from Schiffer & Herbig (2016). 186 Appendix 3. 16S phylogeny 194 Appendix 4 18S phylogeny 196 Appendix 5. H3 phylogeny 198 Appendix 6. COI+16S phylogeny 199 Appendix 7. COI+16S+18S phylogeny 201 Appendix 8. COI+16S+18S+H3 phylogeny 203 | - |
| dc.language.iso | en | - |
| dc.subject | 茗荷屬 | zh_TW |
| dc.subject | 鵝頸藤壺 | zh_TW |
| dc.subject | 茗荷屬 | zh_TW |
| dc.subject | 隱蔽種 | zh_TW |
| dc.subject | 地理隔離 | zh_TW |
| dc.subject | 親緣關係 | zh_TW |
| dc.subject | 形態 | zh_TW |
| dc.subject | 物種界定 | zh_TW |
| dc.subject | 生物地理學 | zh_TW |
| dc.subject | 生物地理學 | zh_TW |
| dc.subject | 物種界定 | zh_TW |
| dc.subject | 形態 | zh_TW |
| dc.subject | 親緣關係 | zh_TW |
| dc.subject | 地理隔離 | zh_TW |
| dc.subject | 隱蔽種 | zh_TW |
| dc.subject | 鵝頸藤壺 | zh_TW |
| dc.subject | vicariance effect | en |
| dc.subject | biogeography | en |
| dc.subject | species delimitation | en |
| dc.subject | morphology | en |
| dc.subject | phylogeny | en |
| dc.subject | vicariance effect | en |
| dc.subject | cryptic species | en |
| dc.subject | genus Lepas | en |
| dc.subject | goose barnacle | en |
| dc.subject | biogeography | en |
| dc.subject | species delimitation | en |
| dc.subject | morphology | en |
| dc.subject | goose barnacle | en |
| dc.subject | genus Lepas | en |
| dc.subject | cryptic species | en |
| dc.subject | phylogeny | en |
| dc.title | 台灣海域茗荷藤壺之隱蔽種多樣性 | zh_TW |
| dc.title | Cryptic diversity of goose-neck barnacle Lepas in Taiwan waters | en |
| dc.type | Thesis | - |
| dc.date.schoolyear | 112-1 | - |
| dc.description.degree | 碩士 | - |
| dc.contributor.oralexamcommittee | 施習德;町田龍二 | zh_TW |
| dc.contributor.oralexamcommittee | Hsi-Te Shih;Ryuji Machida | en |
| dc.subject.keyword | 鵝頸藤壺,茗荷屬,隱蔽種,地理隔離,親緣關係,形態,物種界定,生物地理學, | zh_TW |
| dc.subject.keyword | goose barnacle,genus Lepas,cryptic species,vicariance effect,phylogeny,morphology,species delimitation,biogeography, | en |
| dc.relation.page | 203 | - |
| dc.identifier.doi | 10.6342/NTU202304335 | - |
| dc.rights.note | 同意授權(限校園內公開) | - |
| dc.date.accepted | 2023-10-18 | - |
| dc.contributor.author-college | 生命科學院 | - |
| dc.contributor.author-dept | 生態學與演化生物學研究所 | - |
| dc.date.embargo-lift | 2028-10-16 | - |
| Appears in Collections: | 生態學與演化生物學研究所 | |
Files in This Item:
| File | Size | Format | |
|---|---|---|---|
| ntu-112-1.pdf Restricted Access | 16.89 MB | Adobe PDF | View/Open |
Items in DSpace are protected by copyright, with all rights reserved, unless otherwise indicated.