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  1. NTU Theses and Dissertations Repository
  2. 理學院
  3. 海洋研究所
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/90709
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor謝志豪zh_TW
dc.contributor.advisorChih-hao Hsiehen
dc.contributor.author羅翌瑄zh_TW
dc.contributor.authorYi-Hsuan Loen
dc.date.accessioned2023-10-03T17:16:47Z-
dc.date.available2023-11-10-
dc.date.copyright2023-10-03-
dc.date.issued2023-
dc.date.submitted2023-08-11-
dc.identifier.citationAres, A., Brisbin, M. M., Sato, K. N., Martín, J. P., Iinuma, Y., & Mitarai, S. (2020). Extreme storms cause rapid but short‐lived shifts in nearshore subtropical bacterial communityes. Environmental microbiology, 22(11), 4571-4588.
Azam, F., Fenchel, T., Field, J. G., Gray, J. S., Meyer-Reil, L. A., & Thingstad, F. (1983). The ecological role of water-column microbes in the sea. Marine ecology progress series. Oldendorf, 10(3), 257-263.
Azam, F., & Long, R. A. (2001). Sea snow microcosms. Nature, 414(6863), 495-498.
Bellec, L., Cambon-Bonavita, M. A., Durand, L., Aube, J., Gayet, N., Sandulli, R., ... & Zeppilli, D. (2020). Microbial communities of the shallow-water hydrothermal vent ne ar Naples, Italy, and chemosynthetic symbionts associated with a free-living marine nematode. Frontiers in Microbiology, 11, 2023.
Berry, D., Ben Mahfoudh, K., Wagner, M., & Loy, A. (2011). Barcoded primers used in multiplex amplicon pyrosequencing bias amplification. Applied and environmental microbiology, 77(21), 7846-7849.
Callahan, B. J., McMurdie, P. J., Rosen, M. J., Han, A. W., Johnson, A. J. A., & Holmes, S. P. (2016). DADA2: high-resolution sample inference from Illumina amplicon data. Nature methods, 13(7), 581–583.
Chang, J., Chung, C. C., & Gong, G. C. (1996). Influences of cyclones on chlorophyll a concentration and Synechococcus abundance in a subtropical western Pacific coastal ecosystem. Marine Ecology Progress Series, 140, 199-205.
Chang, Y., Liao, H. T., Lee, M. A., Chan, J. W., Shieh, W. J., Lee, K. T., ... & Lan, Y. C. (2008). Multisatellite observation on upwelling after the passage of Typhoon Hai‐Tang in the southern East China Sea. Geophysical Research Letters, 35(3).
Chen, C. T. A., Liu, C. T., Chuang, W. S., Yang, Y. J., Shiah, F. K., Tang, T. Y., & Chung, S. W. (2003). Enhanced buoyancy and hence upwelling of subsurface Kuroshio waters after a typhoon in the southern East China Sea. Journal of Marine Systems, 42(1-2), 65-79.
Emanuel, K. A. (1987). The dependence of hurricane intensity on climate. Nature, 326(6112), 483-485.
Emanuel, K. (2005). Increasing destructiveness of tropical cyclones over the past 30 years. Nature, 436(7051), 686-688.
Flombaum, P., Gallegos, J. L., Gordillo, R. A., Rincón, J., Zabala, L. L., Jiao, N., ... & Martiny, A. C. (2013). Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus. Proceedings of the National Academy of Sciences, 110(24), 9824-9829.
Fuhrman, J. A., & Azam, F. (1982). Thymidine incorporation as a measure of heterotrophic bacterioplankton production in marine surface waters: evaluation and field results. Marine biology, 66, 109-120.
Groisman, P.Y., Knight, R.W., Easterling, D.R., Karl, T.R, Hegerl, G.C., and Razuvaev, V.N. (2005) Trends in intense precipitation in the climate record.J Climate18: 1326–1350.
Gong, G. C., Chen, Y. L. L., & Liu, K. K. (1996). Chemical hydrography and chlorophyll a distribution in the East China Sea in summer: implications in nutrient dynamics. Continental Shelf Research, 16(12), 1561-1590.
Huang, S., Sherman, A., Chen, C., & Jaffé, P. R. (2021). Tropical cyclone effects on water and sediment chemistry and the microbial community in estuarine ecosystems. Environmental Pollution, 286, 117228.
Hung, C. C., Gong, G. C., Chou, W. C., Chung, C. C., Lee, M. A., Chang, Y., ... & Laws, E. (2010). The effect of typhoon on particulate organic carbon flux in the southern East China Sea. Biogeosciences, 7(10), 3007-3018.
Hung, C. C., & Gong, G. C. (2011). Biogeochemical responses in the southern East China Sea after typhoons. Oceanography, 24(4), 42-51.
Hung, C. C., Chung, C. C., Gong, G. C., Jan, S., Tsai, Y., Chen, K. S., ... & Gawarkiewicz, G. (2013). Nutrient supply in the southern East China Sea after typhoon Morakot. Journal of Marine Research, 71(1-2), 133-149.
Liu, H., Hu, Z., Huang, L., Huang, H., Chen, Z., Song, X., ... & Zhou, L. (2013). Biological response to typhoon in northern South China Sea: A case study of “Koppu”. Continental Shelf Research, 68, 123-132.
Price, J. F. (1981), Upper ocean response to a hurricane,J. Phys. Oceanogr.,11, 153–175.
Kerkhof, L. J., Voytek, M. A., Sherrell, R. M., Millie, D., & Schofield, O. (1999). Variability in bacterial community structure during upwelling in the coastal ocean. Hydrobiologia, 401, 139-148.
Kuss, J., Frazão, H. C., Schulz-Bull, D. E., Zhong, Y., Gao, Y., & Waniek, J. J. (2021). The impact of typhoon “Mangkhut” on surface water nutrient and chlorophyll inventories of the South China Sea in September 2018. Journal of Geophysical Research: Biogeosciences, 126
Kvennefors, E. C. E., Sampayo, E., Ridgway, T., Barnes, A. C., & Hoegh-Guldberg, O. (2010). Bacterial communities of two ubiquitous Great Barrier Reef corals reveals both site-and species-specificity of common bacterial associates. PloS one, 5(4), e10401.
Li, H., Zeng, J., Ren, L., Wang, J., Xing, P., & Wu, Q. L. (2017). Contrasting patterns of diversity of abundant and rare bacterioplankton in freshwater lakes along an elevation gradient. Limnology and Oceanography, 62(4), 1570-1585.
Liu, L., Yang, J., Yu, Z., & Wilkinson, D. M. (2015). The biogeography of abundant and rare bacterioplankton in the lakes and reservoirs of China. The ISME journal, 9(9), 2068-2077.
McLaren, M. R., & Callahan, B. J. (2021). Silva 138.1 prokaryotic SSU taxonomic training data formatted for DADA2 [Data set]. Zenodo, Geneva, Switzerland.
Pai, S. C., Yang, C. C., & Riley, J. P. (1990). Effects of acidity and molybdate concentration on the kinetics of the formation of the phosphoantimonylmolybdenum blue complex. Analytica Chimica Acta, 229, 115-120.
Pai, S. C., Yang, C. C., & Riley, J. P. (1990). Formation kinetics of the pink azo dye in the determination of nitrite in natural waters. Analytica chimica acta, 232, 345-349.
Parson T.R., Maita, Y. and Lalli, C.M. (1984). A Manual of Chemical and Biological Methods for Seawater Analysis. Pergamon Press, Oxford, New York.
Pedrós-Alió, C. (2006). Marine microbial diversity: can it be determined? Trends in microbiology, 14(6), 257-263.
Pun, I., Chang, Y. T., Lin, I. I., Tang, T. Y., & Lien, R. C. (2011). Typhoon-ocean interaction in the western North Pacific: Part 2. Oceanography, 24(4), 32-41.
Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., ... & Glöckner, F. O. (2012). The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic acids research, 41(D1), D590-D596.
Rohwer, F., Seguritan, V., Azam, F., & Knowlton, N. (2002). Diversity and distribution of coral-associated bacteria. Marine Ecology Progress Series, 243, 1-10.
Saitou, N., & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular biology and evolution, 4(4), 406-425.
Shay, L. K. (2009). Upper ocean structure: Response to strong forcing events. Encyclopedia of Ocean Sciences. J. Steele et al., Eds.
Shiah, F. K., Chung, S. W., Kao, S. J., Gong, G. C., & Liu, K. K. (2000). Biological and hydrographical responses to tropical cyclones (typhoons) in the continental shelf of the Taiwan Strait. Continental Shelf Research, 20(15), 2029-2044.
Shih, Y. Y., Hung, C. C., Huang, S. Y., Muller, F. L., & Chen, Y. H. (2020). Biogeochemical variability of the upper ocean response to typhoons and storms in the Northern South China Sea. Frontiers in Marine Science, 7, 151.
Son, S., Platt, T., Bouman, H., Lee, D., & Sathyendranath, S. (2006). Satellite observation of chlorophyll and nutrients increase induced by Typhoon Megi in the Japan/East Sea. Geophysical research letters, 33(5).
Steichen, J. L., Labonté, J. M., Windham, R., Hala, D., Kaiser, K., Setta, S., ... & Quigg, A. (2020). Microbial, physical, and chemical changes in Galveston Bay following an extreme flooding event, Hurricane Harvey. Frontiers in Marine Science, 186.
Strickland, J. D. H., & Parsons, T. R. (1972). A practical handbook of seawater analysis.
Tsai, Y., Chern, C. S., & Wang, J. (2008). Typhoon induced upper ocean cooling off northeastern Taiwan. Geophysical Research Letters, 35(14).
Tsuchiya, K., Kuwahara, V. S., Hamasaki, K., Tada, Y., Ichikawa, T., Yoshiki, T., ... & Toda, T. (2015). Typhoon-induced response of phytoplankton and bacteria in temperate coastal waters. Estuarine, Coastal and Shelf Science, 167, 458-465.
Webster, P. J., Holland, G. J., Curry, J. A., & Chang, H. R. (2005). Changes in tropical cyclone number, duration, and intensity in a warming environment. Science, 309(5742), 1844-1846.
Yang, C. Y., Wei, C. L., Pai, S. C., & Wu, C. K. (1992). The year-round upwelling at the shelf break near the northern tip of Taiwan as evidenced by chemical hydrography. Terrest., Atmosp. Oceanic Sci, 3, 234-276.
Ye, H. J., Sui, Y., Tang, D. L., & Afanasyev, Y. D. (2013). A subsurface chlorophyll a bloom induced by typhoon in the South China Sea. Journal of Marine Systems, 128, 138-145.
Zhao, H., Tang, D., & Wang, D. (2009). Phytoplankton blooms near the Pearl River estuary induced by Typhoon Nuri. Journal of Geophysical Research: Oceans, 114(C12).
Zheng, G. M., & Tang, D. (2007). Offshore and nearshore chlorophyll increases induced by typhoon winds and subsequent terrestrial rainwater runoff. Marine Ecology Progress Series, 333, 61-74.
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dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/90709-
dc.description.abstract海洋細菌浮游生物在海洋生態系統中扮演著重要角色。然而,儘管颱風的強度和頻率預計會由於氣候變遷而增加,颱風對海洋細菌群落的影響尚未被深入研究。本研究在2018年7月超級颱風瑪麗亞襲擊中國東海南部期間,進行了颱風前後的取樣工作,旨在對比(i)颱風前後的環境條件和(ii)颱風前後的海洋細菌群落。考慮到優勢(dominant taxa)和稀有(rare taxa)海洋細菌群落可能對颱風干擾表現出不同的反應,本研究分別檢驗了這兩種細菌群體。颱風前後,共計在8個站點進行了細菌群落和環境因子的收集,每個站點包含4個採樣深度,包括表層(SUR)、葉綠素最大層(DCM)、DCM和底部之間的中間深度(MID)以及底層(BOT)。本研究使用高通量測序技術獲取了細菌的群落組成。幾個物理化學因子,包括溫度、溶氧飽和度、螢光值和無機氮(DIN),在颱風前後顯示出顯著差異。物種多樣性指數(包括豐富度、均勻度和香農多樣性指數)在颱風前後未顯示出顯著差異。然而,就組成而言,整體(dominant taxa + rare taxa)和稀少(rare taxa)物種的細菌群落在颱風前後顯示出顯著差異(p<0.05),但優勢物種(dominant taxa)的細菌群落則僅達統計顯著標準邊緣(p=0.072)。此外,在上層(SUR和DCM)水體存在著環境差異與群落差異之間的正相關,但在下層(MID和BOT)水體則沒有這種關聯。再者,dbRDA雙變量圖顯示,受颱風事件影響,溫度、鹽度和螢光值可能對中國東海南部的細菌群落產生影響。zh_TW
dc.description.abstractMarine bacterioplankton play an important role in the marine ecosystem. Typhoon effects on marine bacterioplankton community are yet to be investigated, albeit that intensity and frequency of typhoons are expected to increase due to climate change. With sampling on board of the research vessel before and after the super typhoon Maria in July 2018 in the southern East China Sea (ECS), the aim of this study is to contrast (i) the environmental conditions and (ii) the bacterioplankton communities before and after the typhoon. This study examined separately for both dominant and rare bacterioplankton, considering that these two groups of bacteria may exhibit different responses to the typhoon disturbance. Bacterioplankton communities along with environmental variables were collected at a total of 8 stations before and after the typhoon, with each station containing 4 sampling depths, including surface (SUR), depth of chlorophyll maximum (DCM), a middle depth between DCM and bottom (MID), and the layer close to the bottom (BOT). This study employed high-throughput sequencing techniques to obtain the community of bacterioplankton. Several physicochemical variables, including temperature, dissolved-oxygen saturation, fluorescence, and DIN, changed significantly pre- and post-typhoon. Species diversity indices (including Richness, Evenness, and Shannon index) showed no significant difference after the typhoon. Whereas for the taxonomic composition, the communities of whole (dominant + rare) taxa and rare taxa were significantly different pre- and post-typhoon (p<0.05), yet the dominant taxa were only marginally significant (p=0.072). In addition, a positive correlation between physicochemical dissimilarity versus community dissimilarity exists in the upper layers (SUR and DCM), but not in the lower layers (MID and BOT). Furthermore, dbRDA biplot indicates that temperature, salinity, and fluorescence explained the bacterial community variation in the southern ESC, which might be influenced by the typhoon.en
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dc.description.tableofcontents致謝 i
中文摘要 ii
Abstract iii
Contents v
Figure contents vi
Table contents vii
Appendix contents viii
1. Introduction 1
1.1 The typhoon effects on marine environment 1
1.2 Marine bacterioplankton community and their responses to typhoon disturbance 2
1.3 Rare and abundant taxa of bacterioplankton 4
1.4 Hydrology of the southern East China Sea (sECS) 5
1.5 Aims 6
2. Materials and Methods 8
2.1 Typhoon Maria (2018) 8
2.2 Sampling time and stations 8
2.3 Sample collection 9
2.4 Sequencing analysis 11
2.5 Data analysis 13
3. Results 17
3.1 Environmental conditions pre- and post-typhoon 17
3.2 α diversity and β diversity of bacterioplankton pre- and post-typhoon 17
3.3 Bacterioplankton taxonomic composition 18
3.4 The relationships between environmental variables and the bacterioplankton communities 20
4. Discussion 22
4.1 The typhoon effects 22
4.2 Quantifying the shifts in bacterioplankton communities 24
4.3 The change in the relative abundance of the family Cyanobiaceae after the typhoon 25
5. Figure 27
6. Table 35
7. References 38
8. Appendix 45
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dc.language.isoen-
dc.subjectβ多樣性zh_TW
dc.subject颱風效應zh_TW
dc.subject細菌性浮游生物群落zh_TW
dc.subjectα多樣性zh_TW
dc.subject東海南部zh_TW
dc.subjectBacterioplankton communityen
dc.subjectTyphoon effectsen
dc.subjectsouthern East China Seaen
dc.subjectβ diversityen
dc.subjectα diversityen
dc.title颱風效應對東海南部細菌群落之影響zh_TW
dc.titleTyphoon effects on bacterioplankton communities in the southern East China Seaen
dc.typeThesis-
dc.date.schoolyear111-2-
dc.description.degree碩士-
dc.contributor.oralexamcommittee夏復國;湯森林;呂曉珮;塗子萱zh_TW
dc.contributor.oralexamcommitteeFuh-Kwo Shiah;Sen-Lin Tang;Hsiao-Pei Lu;Tzu-Hsuan Tuen
dc.subject.keyword颱風效應,細菌性浮游生物群落,α多樣性,β多樣性,東海南部,zh_TW
dc.subject.keywordTyphoon effects,Bacterioplankton community,α diversity,β diversity,southern East China Sea,en
dc.relation.page60-
dc.identifier.doi10.6342/NTU202303957-
dc.rights.note同意授權(全球公開)-
dc.date.accepted2023-08-13-
dc.contributor.author-college理學院-
dc.contributor.author-dept海洋研究所-
dc.date.embargo-lift2026-08-14-
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