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完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor席行正zh_TW
dc.contributor.advisorHsing-Cheng Hsien
dc.contributor.author紀淑君zh_TW
dc.contributor.authorShu-Chun Chien
dc.date.accessioned2023-09-22T17:38:21Z-
dc.date.available2023-11-09-
dc.date.copyright2023-09-22-
dc.date.issued2023-
dc.date.submitted2023-08-10-
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dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/90153-
dc.description.abstract近年來,內分泌干擾物質(EDC)所引起的環境污染是一個重要的議題,由於內分泌系統對激素濃度的微小變化極其敏感,因此人們越來越關注可能模仿激素活性的環境污染物。全球有80%未經處理的工業廢水直接排出造成水污染及土壤污染,幾乎在每個生態系統中都能檢測到EDC。由於大多數的內分泌干擾物質作用機制仍然未知,測試所有使用過的化學品的作用是一項重要但也是昂貴且困難的任務。而且生物測定的可用性有限,體外和體內測定法存在實驗週期長、經濟成本高的缺點,因此不適用於大量化學品的常規篩查,反之迫切需要更合理的方法來幫助快速識別潛在有害的化學物質。
本研究採用PaDEL描述符和量子化學遺傳算法多重線性回歸(GA-MLR)方法對雌激素受體α(ERα)與異種雌激素(PCB、苯酚和DDT)和植物性雌激素的相對結合親和力(log RBA)進行預測。 優化模型的結果表明,異種雌激素和植物性雌激素皆受疏水相互作用的影響,不同的是異種雌激素主要是電子流動影響log RBA大小,而影響植物性雌激素的log RBA的主要因素則是氫鍵相互作用和分子的結構。透過全局的分子對接與局部的量子化學簇模型方法結果表明,氫鍵相互作用和疏水相互作用證實了內分泌干擾物化學質和ERα結合結構的穩定性。基於概念密度泛函理論計算的化學反應性描述符也表明電荷控制相互作用的結合機制通常會優於前沿控制相互作用的結合機制。
zh_TW
dc.description.abstractEnvironmental pollution caused by endocrine-disrupting substances (EDC) has been an essential topic recently. Since the endocrine system is susceptible to small changes in hormone concentrations, there has been increasing concern about environmental pollutants that may mimic hormone activity. 80% of the world's untreated industrial wastewater is directly discharged to cause water and soil pollution, and EDC can be detected in almost every ecosystem. Since the mechanism of action of most endocrine-disrupting substances remains unknown, testing the effects of all chemicals used is a necessary but also expensive and challenging task. Moreover, the limited availability of bioassays, in vitro and in vivo assays have the disadvantages of long experimental cycle and high economic cost, making them unsuitable for routine screening of many chemicals. In contrast, more rational methods are urgently needed to help rapidly identify potentially harmful chemicals.
In this study, PaDEL descriptors and quantum chemical genetic algorithm multiple linear regression (GA-MLR) methods were used to predict the relative binding affinities (log RBA) of estrogen receptor α (ERα) to xenoestrogens (PCB, phenol, and DDT) and phytoestrogens. The results of the optimized model show that both xenoestrogens and phytoestrogens are affected by hydrophobic interactions. The difference is that xenoestrogens mainly affect the size of log RBA by electron flow, while the main factors affecting log RBA of phytoestrogens are hydrogen bond interactions and molecular structures. Through the global molecular docking and local quantum chemical cluster modeling methods, the hydrogen bond interaction and hydrophobic interaction confirmed the stability of the endocrine disruptor chemical substance and the binding structure of ERα. Chemical reactivity descriptors based on conceptual density functional theory calculations suggest that binding mechanisms for charge-controlled interactions generally outperform those for front-controlled interactions.
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dc.description.tableofcontentsAcknowledgement I
中文摘要 III
Abstract IV
List of Tables VIII
List of Figures XI
Nomenclature XIV
Chapter 1. Introduction 1
1.1 Motivation 1
1.2 Research objectives 5
Chapter 2. Literature Review 9
2.1 Introduction of Estrogen Receptor Alpha (ERα) 9
2.2 Introduction of Endocrine Disrupting Chemicals (EDCs) 10
2.3 QSAR Models 14
2.4 Molecular Docking 15
2.5 Density Functional Theory (DFT) and Conceptual Density Functional Theory (CDFT) 16
2.6 Quantum Chemical Cluster Approach 18
Chapter 3. Material and Methods 19
3.1 Research framework 19
3.2 Dataset 21
3.3 Quantum Chemical Descriptors 21
3.4 PaDEL Descriptors 24
3.5 GA-MLR Method 24
3.6 Molecular Docking 26
3.7 Quantum Chemical Cluster Model Approach 27
Chapter 4. Result and Discussion 28
4.1 Development of the GA-MLR Models 28
4.1.1 PaDEL - Descriptor GA-MLR Model for Xenoestrogens 29
4.1.2 Quantum Chemical GA-MLR Model for Xenoestrogens 36
4.1.3 PaDEL - Descriptor GA-MLR Model for Phytoestrogens 42
4.1.4 Quantum Chemical GA-MLR Model for Phytoestrogens 48
4.1.5 PaDEL - Descriptor GA-MLR Model for Xenoestrogens and Phytoestrogens 54
4.1.6 Quantum Chemical GA-MLR Model for Xenoestrogens and Phytoestrogens 62
4.1.7 The Overall Interpretation of GA-MLR Models 70
4.2 Molecular Docking Simulation 74
4.2.1 The Interaction between Xenoestrogens and ERα 74
4.2.1.3 DDTs 88
4.2.2 The Interaction between Phytoestrogens and ERα 95
4.2.3 The Overall Interpretation of Molecular Docking Simulation 115
4.3 Quantum Chemical Cluster Model 116
4.3.1 The Results of Xenoestrogens with ERα 122
4.3.2 The Results of Phytoestrogens with ERα 132
4.3.3 The Overall Interpretation of Quantum Chemical Cluster Model 140
4.4 Conceptual Density Functional Theory 141
4.4.1 The Conceptual Density Functional Theory of Xenoestrogens 142
4.4.2 The Conceptual Density Functional Theory of Phytoestrogens 143
Chapter 5. Conclusion and Suggestion 146
5.1 Conclusion 146
5.2 Suggestion 147
References 148
Original Publications of This Dissertation 165
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dc.language.isoen-
dc.subject雌激素受體αzh_TW
dc.subject內分泌干擾化學物質zh_TW
dc.subject遺傳算法多元線性回歸zh_TW
dc.subject分子對接zh_TW
dc.subject量子化學團簇模型zh_TW
dc.subject概念密度泛函理論zh_TW
dc.subjectConceptual density functional theoryen
dc.subjectMolecular dockingen
dc.subjectQuantum chemical cluster modelen
dc.subjectEndocrine disrupting chemicalsen
dc.subjectEstrogen receptor αen
dc.subjectGenetic algorithm multiple linear regressionen
dc.title雌激素受體α與內分泌干擾物結合相互作用的QSAR和量子化學研究zh_TW
dc.titleQSAR and Quantum Chemical Studies on the Binding Interaction of Estrogen Receptor Alpha with Endocrine Disrupting Chemicalsen
dc.typeThesis-
dc.date.schoolyear111-2-
dc.description.degree碩士-
dc.contributor.oralexamcommittee張家銘;童俊維zh_TW
dc.contributor.oralexamcommitteeChia-Ming Chang;Chun-Wei Tungen
dc.subject.keyword雌激素受體α,內分泌干擾化學物質,遺傳算法多元線性回歸,分子對接,量子化學團簇模型,概念密度泛函理論,zh_TW
dc.subject.keywordEstrogen receptor α,Endocrine disrupting chemicals,Genetic algorithm multiple linear regression,Molecular docking,Quantum chemical cluster model,Conceptual density functional theory,en
dc.relation.page165-
dc.identifier.doi10.6342/NTU202304011-
dc.rights.note同意授權(全球公開)-
dc.date.accepted2023-08-12-
dc.contributor.author-college工學院-
dc.contributor.author-dept環境工程學研究所-
dc.date.embargo-lift2028-08-10-
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