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  1. NTU Theses and Dissertations Repository
  2. 工學院
  3. 應用力學研究所
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/78740
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor沈弘俊(Horn-Jiunn Sheen)
dc.contributor.authorYung-Yu Huangen
dc.contributor.author黃詠榆zh_TW
dc.date.accessioned2021-07-11T15:15:59Z-
dc.date.available2025-09-01
dc.date.copyright2020-10-20
dc.date.issued2020
dc.date.submitted2020-08-13
dc.identifier.citation[1] A. Manz, N. Graber, and H.á. Widmer, Miniaturized total chemical analysis systems: a novel concept for chemical sensing. Sensors and actuators B: Chemical, 1990. 1(1): p. 244-248.
[2] A.R. Grayson, R.S. Shawgo, A.M. Johnson, N.T. Flynn, Y. Li, M.J. Cima, and R. Langer, A BioMEMS review: MEMS technology for physiologically integrated devices. Proceedings of the IEEE, 2004. 92(1): p. 6-21.
[3] D. Dey and T. Goswami, Optical biosensors: a revolution towards quantum nanoscale electronics device fabrication. BioMed Research International, 2011. 2011.
[4] D. Grieshaber, R. MacKenzie, J. Voeroes, and E. Reimhult, Electrochemical biosensors-sensor principles and architectures. Sensors, 2008. 8(3): p. 1400-1458.
[5] G. Marrazza, Piezoelectric biosensors for organophosphate and carbamate pesticides: a review. Biosensors, 2014. 4(3): p. 301-317.
[6] J. Homola, S.S. Yee, and G. Gauglitz, Surface plasmon resonance sensors: review. Sensors and Actuators B: Chemical, 1999. 54(1): p. 3-15.
[7] W. Tan, Y. Huang, T. Nan, C. Xue, Z. Li, Q. Zhang, and B. Wang, Development of protein A functionalized microcantilever immunosensors for the analyses of small molecules at parts per trillion levels. Analytical chemistry, 2009. 82(2): p. 615-620.
[8] R. Vaughan, C. O’sullivan, and G. Guilbault, Development of a quartz crystal microbalance (QCM) immunosensor for the detection of Listeria monocytogenes. Enzyme and Microbial Technology, 2001. 29(10): p. 635-638.
[9] Epstein, M.A, Achong, B.G, and Barr, Y.M, Virus particles in cultured lymphoblasts from Burkitt's lymphoma. The Lancet, 1964. 1: p. 702–703.
[10] Liu, X., J. Tang, M. Wang, Q. Ma, and Y. Wang, Visual detection and evaluation of latent and lytic gene expression during Epstein-Barr virus infection using one-step reverse transcription loop-mediated isothermal amplification. Int J Mol Sci, 2013. 14(12): p. 23922-40.
[11] R. Wood, XLII. On a remarkable case of uneven distribution of light in a diffraction grating spectrum. The London, Edinburgh, and Dublin Philosophical Magazine and Journal of Science, 1902. 4(21): p. 396-402.
[12] U. Fano, The theory of anomalous diffraction gratings and of quasi-stationary waves on metallic surfaces (Sommerfeld’s waves). JOSA, 1941. 31(3): p. 213-222.
[13] A. Hessel and A. Oliner, A new theory of Wood’s anomalies on optical gratings. Applied Optics, 1965. 4(10): p. 1275-1297.
[14] R. Ritchie, Plasma losses by fast electrons in thin films. Physical Review, 1957. 106(5): p. 874.
[15] E. Kretschmann and H. Raether, Notizen: radiative decay of non radiative surface plasmons excited by light. Zeitschrift für Naturforschung A, 1968. 23(12): p. 2135-2136.
[16] A. Otto, Excitation of nonradiative surface plasma waves in silver by the method of frustrated total reflection. Zeitschrift für Physik, 1968. 216(4): p. 398-410.
[17] Liedberg, B., C. Nylander, and I. Lunström, Surface plasmon resonance for gas detection and biosensing. Sensors and Actuators, 1983. 4: p. 299-304.
[18] Nylander, C., B. Liedberg, and T. Lind, Gas detection by means of surface plasmon resonance. Sensors and Actuators, 1982. 3: p. 79-88.
[19] Sciences, G.H.L., Principles of Surface Plasmon resonance (SPR) used in Biacore™ systems. 2013.
[20] Inc., B.I., Principle of SPR detection: intensity profile and shift of the SPR angle. 2014.
[21] MacBeath, G. and S.L. Schreiber, Printing Proteins as Microarrays for High-Throughput Function Determination. Science, 2000. 289(5485): p. 1760.
[22] Hoa, X.D., A.G. Kirk, and M. Tabrizian, Towards integrated and sensitive surface plasmon resonance biosensors: a review of recent progress. Biosens Bioelectron, 2007. 23(2): p. 151-60.
[23] Hu, W.P., S.J. Chen, K.T. Huang, J.H. Hsu, W.Y. Chen, G.L. Chang, and K.A. Lai, A novel ultrahigh-resolution surface plasmon resonance biosensor with an Au nanocluster-embedded dielectric film. Biosens Bioelectron, 2004. 19(11): p. 1465-71.
[24] T.W. Ebbesen, H.J. Lezec, H. Ghaemi, T. Thio, and P. Wolff, Extraordinary optical transmission through sub-wavelength hole arrays. Nature, 1998. 391(6668): p. 667-669.
[25] A.G. Brolo, R. Gordon, B. Leathem, and K.L. Kavanagh, Surface plasmon sensor based on the enhanced light transmission through arrays of nanoholes in gold films. Langmuir, 2004. 20(12): p. 4813-4815.
[26] Guillaumée, M., L.A. Dunbar, C. Santschi, E. Grenet, R. Eckert, O.J.F. Martin, and R.P. Stanley, Polarization sensitive silicon photodiodes using nanostructured metallic grids. Applied Physics Letters, 2009. 94(19).
[27] Sundaram, V.M. and S.B. Wen, An easy method to perform e-beam negative tone lift-off fabrication on dielectric material with a sandwiched conducting polymer layer. Journal of Micromechanics and Microengineering, 2011. 21(6).
[28] Rindzevicius, T., Y. Alaverdyan, M. Käll, W.A. Murray, and W.L. Barnes, Long-Range Refractive Index Sensing Using Plasmonic Nanostructures. The Journal of Physical Chemistry C, 2007. 111(32): p. 11806-11810.
[29] Chou, S.Y., P.R. Krauss, and P.J. Renstrom, Imprint of sub‐25 nm vias and trenches in polymers. Applied Physics Letters, 1995. 67(21): p. 3114-3116.
[30] Saiki RK, Scharf S, Faloona F, Mullis KB, Horn GT, Erlich HA, Arnheim N. Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science, 1985. 230: p.1350-1354.
[31] Daniel, J.H., S. Iqbal, R.B. Millington, D.F. Moore, C.R. Lowe, D.L. Leslie, M.A. Lee, and M.J. Pearce, Silicon microchambers for DNA amplification. Sensors and Actuators A: Physical, 1998. 71(1): p. 81-88.
[32] Liu, H.-B., H.-Q. Gong, N. Ramalingam, Y. Jiang, C.-C. Dai, and K.M. Hui, Micro air bubble formation and its control during polymerase chain reaction (PCR) in polydimethylsiloxane (PDMS) microreactors. Journal of Micromechanics and Microengineering, 2007. 17(10): p. 2055-2064.
[33] Trung, N.B., M. Saito, H. Takabayashi, P.H. Viet, E. Tamiya, and Y. Takamura, Multi-chamber PCR chip with simple liquid introduction utilizing the gas permeability of polydimethylsiloxane. Sensors and Actuators B: Chemical, 2010. 149(1): p. 284-290.
[34] Kopp, M.U., A.J.d. Mello, and A. Manz, Chemical Amplification: Continuous-Flow PCR on a Chip. Science, 1998. 280(5366): p. 1046.
[35] Yu, C., W. Liang, I. Kuan, C. Wei, and W. Gu, Fabrication and characterization of a flow-through PCR device with integrated chromium resistive heaters. Journal of the Chinese Institute of Chemical Engineers, 2007. 38(3-4): p. 333-339.
[36] Neuzil, P., C. Zhang, J. Pipper, S. Oh, and L. Zhuo, Ultra fast miniaturized real-time PCR: 40 cycles in less than six minutes. Nucleic Acids Res, 2006. 34(11): p. e77.
[37] Tan Tai Nguyen, Kieu The Loan Trinh, Won Jung Yoon, Nae Yoon Lee, Heongkyu Ju, Integration of a microfluidic polymerase chain reaction device and surface plasmon resonance fiber sensor into an inline all-in-one platform for pathogenic bacteria detection, Sensors and Actuators B: Chemical, 2017. 242: P. 1-8
[38] 邱國斌, 蔡., 金屬表面電漿簡介. 物理雙月刊, 2006. 28: p. 472-485.
[39] Faghih, M.M., Sharp, M.K. Solvent-based bonding of PMMA–PMMA for microfluidic applications. Microsyst Technol, 2019. 25: p. 3547–3558.
[40] Lee, K.L., J.B. Huang, J.W. Chang, S.H. Wu, and P.K. Wei, Ultrasensitive biosensors using enhanced Fano resonances in capped gold nanoslit arrays. Sci Rep, 2015. 5: p. 8547.
[41] Lee, K.L., P.W. Chen, S.H. Wu, J.B. Huang, S.Y. Yang, and P.K. Wei, Enhancing surface plasmon detection using template-stripped gold nanoslit arrays on plastic films. ACS Nano, 2012. 6(4): p. 2931-9.
[42] Lee, K.L. and P.K. Wei, Enhancing surface plasmon detection using ultrasmall nanoslits and a multispectral integration method. Small, 2010. 6(17): p. 1900-7.
[43] Lee, K.L., M.L. You, C.H. Tsai, E.H. Lin, S.Y. Hsieh, M.H. Ho, J.C. Hsu, and P.K. Wei, Nanoplasmonic biochips for rapid label-free detection of imidacloprid pesticides with a smartphone. Biosens Bioelectron, 2016. 75: p. 88-95.
[44] Lee, K.-L., S.-H. Wu, C.-W. Lee, and P.-K. Wei, Sensitive biosensors using Fano resonance in single gold nanoslit with periodic grooves. Optics Express, 2011. 19(24): p. 24530-24539.
[45] Lee, K.-L. and P.-K. Wei, Optimization of periodic gold nanostructures for intensity-sensitive detection. Applied Physics Letters, 2011. 99(8).
[46] Guo, Q., I.W.K. Tham, S. Lin, Y. Su, Z. Chen, J. Lin, L. Han, Q. Lin, J. Pan, and J.J. Lu, Prognostic signifi cance of pre-treatment latent membrane protein 1 from nasopharyngeal swabs for stage III-IVA nasopharyngeal carcinoma. 2012.
[47] Ryan, J.L., H. Fan, S.L. Glaser, S.A. Schichman, N. Raab-Traub, and M.L. Gulley, Epstein-Barr Virus Quantitation by Real-Time PCR Targeting Multiple Gene Segments. The Journal of Molecular Diagnostics, 2004. 6(4): p. 378-385.
dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/78740-
dc.description.abstractEB病毒是一種與鼻咽癌及淋巴癌高度相關的病毒,而 LMP1是EB病毒中常見的表現蛋白之一,因此本研究便以LMP1 DNA作為檢測標的,利用微流道聚合酶連鎖反應裝置結合奈米狹縫表面電漿共振感測器,開發出一套結合DNA複製及檢測的裝置化整合平台,能夠針對LMP1 DNA及其真實檢體進行免標定、即時、高靈敏度的檢測。
本研究微流道PCR採用分段加溫的方式,可以省去傳統PCR反覆升降溫的多餘能源及時間消耗。感測器使用奈米狹縫SPR晶片,是一種免標定、即時檢測、高靈敏度的生物感測器,由於其體積小、光路設計簡單,因此相當適合與微流道PCR整合。微流道製作方式採用CNC雕刻機雕刻壓克力搭配有機溶液黏合法,成本低且製造快速。奈米狹縫SPR晶片採用自動化奈米壓印技術,於PC板上壓印奈米級光柵結構,製作方式簡單,適合大量製造。
微流道PCR裝置在流速5 g/mL之下,能達到儀器PCR 30 cycles的複製效果,且反應時間僅需要36分鐘,比傳統儀器節省了將近70分鐘。針對低濃度LMP1 DNA的檢測,最低檢測極限濃度達到10 pg/mL,比傳統凝膠電泳檢測方式擁有更低的檢測範圍。真實檢體檢測方面,亦能成功從癌細胞萃取出的DNA中檢測出LMP1基因,顯示本研究裝置應用於真實檢體檢測的可行性。
zh_TW
dc.description.abstractEB virus is highly associated with Nasopharyngeal carcinoma and Lymphoma, and LMP1 is one of the main performance proteins of the EB virus. A combined device of microfluidic Polymerase Chain Reaction with nanoslit Surface Plasmon Resonance sensor for LMP1 DNA detection has been developed, which enables amplification and detection of LMP1 gene on a combined platform. The combined device performed a label-free, real-time, highly sensitive, low cost, and rapid detection versus LMP1 DNA and its relative real samples.
The continued-flow PCR has been used, which can avoid unnecessary energy loss and time consumption, and nanoslit SPR chips have been used as a label-free, real-time, high sensitivity sensor. Considering the small volume and simple optical setup, the nanoslit SPR chip is quite feasible to integrate with microfluidic PCR. Microchannel was fabricated by CNC engraving and solvent bonding of PMMA. Furthermore, automatic Nanoimprinting Lithography has been used to fabricate SPR chips by printing nanoscale grating structure, owning the advantage of low cost and mass production.
An optimized flow rate has been found out. For the 30 cycles reaction of PCR, the new method only took 36 minutes, almost 70 minutes less than the conventional method with the same DNA amplification effect. Besides, the different initial concentration of LMP1 DNA has been detected by the combined device. The detection limit of LMP1 DNA is 10 pg/mL. Moreover, the combined device is capable of detecting real samples of extracted DNA from EBV-positive cells, showing the potential of clinical diagnosis.
en
dc.description.provenanceMade available in DSpace on 2021-07-11T15:15:59Z (GMT). No. of bitstreams: 1
U0001-2807202014534500.pdf: 4256285 bytes, checksum: 03f21507f109118a62e27c19ceb352dd (MD5)
Previous issue date: 2020
en
dc.description.tableofcontents致謝 II
摘要 III
Abstract IV
目次 V
圖目次 VII
表目次 10
第一章 導論 11
1.1 前言 11
1.2 研究動機與目的 13
1.3 研究方法 14
1.4 論文架構 15
第二章 文獻回顧 16
2.1 表面電漿共振技術之發展背景 16
2.2 微流道聚合酶連鎖反應之發展背景 19
第三章 實驗原理 23
3.1 表面電漿子原理 23
3.2 表面電漿共振之激發與免疫分析原理 29
3.3 聚合酶連鎖反應原理 32
第四章 實驗架設與方法 34
4.1 PCR微流道與SPR晶片製程 34
4.1.1 PCR微流道製程 34
4.1.2 SPR晶片製程 36
4.2 溫度控制系統 38
4.3 光學偵測系統 40
4.4 PCR配方與引子設計 41
4.5 DNA之萃取 42
4.6 SPR晶片之表面修飾與Probe設計 43
4.7 動態分析方法 45
第五章 實驗結果與討論 46
5.1 微流道尺寸量測 46
5.2 溫控系統之均勻性與穩定性 47
5.3 光學偵測系統搭配SPR晶片之靈敏度量測 48
5.4 整合裝置檢測LMP1 DNA與流速最佳化 49
5.4.1 不同cycle數之LMP1 DNA紅移量 50
5.4.2 不同流速之凝膠電泳量測結果 53
5.4.3 不同流速之SPR量測結果 55
5.4.4 與先前研究之比較 56
5.5 LMP1 DNA之檢測極限 58
5.6 真實檢體之量測 59
第六章 結論與未來展望 64
參考文獻 65
附錄 69
dc.language.isozh-TW
dc.subject微流道聚合酶連鎖反應zh_TW
dc.subjectLMP1 DNAzh_TW
dc.subject奈米狹縫表面電漿共振晶片zh_TW
dc.subject免標定即時檢測zh_TW
dc.subjectLMP1 DNAen
dc.subjectnanoslit SPRen
dc.subjectMicrofluidic PCRen
dc.subjectLabel-free detectionen
dc.title微流道聚合酶連鎖反應裝置結合奈米狹縫表面電漿共振感測器用於LMP1 DNA 之檢測zh_TW
dc.titleMicrofluidic Polymerase chain reaction device combined with nanoslit surface plasmon resonance sensor for LMP1 DNA detectionen
dc.typeThesis
dc.date.schoolyear109-1
dc.description.degree碩士
dc.contributor.coadvisor魏培坤(Pei-Kuen Wei)
dc.contributor.oralexamcommittee盧彥文(Yen-Wen Lu),范育睿(Yu-Jui Fan)
dc.subject.keywordLMP1 DNA,免標定即時檢測,微流道聚合酶連鎖反應,奈米狹縫表面電漿共振晶片,zh_TW
dc.subject.keywordLMP1 DNA,Label-free detection,Microfluidic PCR,nanoslit SPR,en
dc.relation.page72
dc.identifier.doi10.6342/NTU202001967
dc.rights.note有償授權
dc.date.accepted2020-08-14
dc.contributor.author-college工學院zh_TW
dc.contributor.author-dept應用力學研究所zh_TW
dc.date.embargo-lift2025-09-01-
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