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  1. NTU Theses and Dissertations Repository
  2. 工學院
  3. 應用力學研究所
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/78657
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dc.contributor.advisor沈弘俊zh_TW
dc.contributor.advisorHorn-Jiunn Sheenen
dc.contributor.author蔡昇枋zh_TW
dc.contributor.authorSheng-Fang Tsaien
dc.date.accessioned2021-07-11T15:10:16Z-
dc.date.available2024-08-15-
dc.date.copyright2019-08-19-
dc.date.issued2019-
dc.date.submitted2002-01-01-
dc.identifier.citation[1] Terry SC, Jerman JH, Angell JB. A gas chromatographic air analyzer fabricated on a silicon wafer. IEEE Transactions on Electron Devices. 1979;26(12):1880-1886.
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[3] Xia Y, Whitesides GM. SOFT LITHOGRAPHY. Annual Review of Materials Science. 1998;28(1):153-184.
[4] McDonald JC, Whitesides GM. Poly(dimethylsiloxane) as a Material for Fabricating Microfluidic Devices. Accounts of Chemical Research. 2002;35(7):491-499.
[5] Siedentopf H, Zsigmondy R. Uber Sichtbarmachung und Größenbestimmung ultramikoskopischer Teilchen, mit besonderer Anwendung auf Goldrubingläser. Annalen der Physik. 1902;315(1):1-39.
[6] Voie AH, Burns DH, Spelman FA. Orthogonal-plane fluorescence optical sectioning: Three-dimensional imaging of macroscopic biological specimens. Journal of Microscopy. 1993;170(3):229-236.
[7] Huisken J. Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy. Science. 2004;305(5686):1007-1009.
[8] Pawley JB, Springer Science+Business Media. Handbook of Biological Confocal Microscopy. New York: Springer, Post; 2007.
[9] Strobl F, Klees S, Stelzer EHK. Light Sheet-based Fluorescence Microscopy of Living or Fixed and Stained Tribolium castaneum Embryos. Journal of Visualized Experiments. 2017;122(55629):1-17.
[10] Keller PJ, Schmidt AD, Wittbrodt J, Stelzer EHK. Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy. Science. 2008;322(5904):1065-1069.
[11] Chen B-C, Legant WR, Wang K, et al. Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution. Science. 2014;346(6208):1257998.
[12] Ritter JG, Veith R, Veenendaal A, Siebrasse JP, Kubitscheck U. Light Sheet Microscopy for Single Molecule Tracking in Living Tissue. Langowski J, ed. PLoS ONE. 2010;5(7).
[13] Mertz J, Kim J. Scanning light-sheet microscopy in the whole mouse brain with HiLo background rejection. Journal of Biomedical Optics. 2010;15(1):016027.
[14] Royer LA, Lemon WC, Chhetri RK, et al. Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms. Nature Biotechnology. 2016;34(12):1267-1278.
[15] Truong TV, Supatto W, Koos DS, Choi JM, Fraser SE. Deep and fast live imaging with two-photon scanned light-sheet microscopy. Nature Methods. 2011;8(9):757-760.
[16] Regmi R, Mohan K, Mondal PP. Light sheet based imaging flow cytometry on a microfluidic platform. Microscopy Research and Technique. 2013;76(11):1101-1107.
[17] Deschout H, Raemdonck K, Stremersch S, et al. On-chip light sheet illumination enables diagnostic size and concentration measurements of membrane vesicles in biofluids. Nanoscale. 2014;6(3):1741-1747.
[18] Regmi R, Mohan K, Mondal PP. High resolution light-sheet based high-throughput imaging cytometry system enables visualization of intra-cellular organelles. AIP Advances. 2014;4(9):097125.
[19] Meddens MBM, Liu S, Finnegan PS, Edwards TL, James CD, Lidke KA. Single Objective Light-Sheet Microscopy for High-Speed Whole-Cell 3D Super-Resolution. Biophysical Journal. 2017;112(3):2219-2236.
[20] Durnin J. Exact solutions for nondiffracting beams I The scalar theory. Journal of the Optical Society of America A. 1987;4(4):651-654.
[21] Bouwkamp CJ. Diffraction Theory. Reports on Progress in Physics. 1954;17(1):35-100.
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[24] Turunen J, Vasara A, Friberg AT. Holographic generation of diffraction-free beams. Applied Optics. 1988;27(19):3959-3962.
[25] Indebetouw G. Nondiffracting optical fields: some remarks on their analysis and synthesis. Journal of the Optical Society of America A. 1989;6(1):150-152.
[26] McCutchen CW. Generalized Aperture and the Three-Dimensional Diffraction Image. Journal of the Optical Society of America. 1964;54(2):240-244.
[27] Lin Y, Seka W, Eberly JH, Huang H, Brown DL. Experimental investigation of Bessel beam characteristics. Applied Optics. 1992;31(15):2708-2713.
[28] Chattrapiban N, Rogers EA, Cofield D, Hill, III WT, Roy R. Generation of nondiffracting Bessel beams by use of a spatial light modulator. Optics Letters. 2003;28(22):2183-2185.
[29] 3i, Lattice LightSheet Brochure, https://www.intelligent-imaging.com/wp-content/uploads/2019/01/3i-Lattice-LightSheet.pdf
[30] OLYMPUS, Pupil Diameter and Beam Spot Diameter of Objective Lens, https://www.olympus-ims.com/en/microscope/terms/luminous_flux/
[31] Aguet F, Upadhyayula S, Gaudin R, et al. Membrane dynamics of dividing cells imaged by lattice light-sheet microscopy. Lippincott-Schwartz J, ed. Molecular Biology of the Cell. 2016;27(22):3418-3435.
[32] Legant WR, Shao L, Grimm JB, et al. High-density three-dimensional localization microscopy across large volumes. Nature Methods. 2016;13(4):359-365.
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[35] Mercene Labs AB, OSTEMER 322 Crystal Clear, https://www.ostemers.com/products/ostemer-crystal-clear/
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dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/78657-
dc.description.abstract對於活體生物樣本的觀測而言,樣本所受到之光漂白與光毒性為影響成像效果的重要因素,有鑑於目前的層光螢光顯微術之激發光普遍使用環形光罩以產生貝索光束,然而,其具有旁波瓣而導致樣本於焦平面外額外之光漂白與光毒性,故本研究改用空間光調製器產生晶格光束,以相消性干涉的方式消除旁波瓣之影響,即晶格層光顯微術。本研究結合了層光螢光顯微術以及微流體系統以開發出一套影像流式細胞儀系統,期望藉由光學系統之優化以及流體之連續性來達到高解析度與高效率之樣本檢測效果。
本研究設計了兩層式的微流道晶片以符合光學系統的空間位置,製程的部分首先使用黃光微影製程進行微流道母模之製作。第一層晶片為樣本之觀測區域,使用OSTEMER 322樹脂作為本體,並使用折射率接近於水的LUMOX®薄膜作為微流道晶片之基板,以減少光束傳遞於不同介質中的影響;第二層晶片則是採用了流道轉向的設計,使得樣本流體的出入口延伸於鏡頭的外部,避免於檢測樣本時導致晶片被鏡頭頂到。
本研究成功地開發出一套具有高解析度、高檢測效率、低光漂白及低光毒性之光學與微流體整合系統,於微流道中所量測到之層光厚度僅1~2 μm,微流體系統的部分則比較了單條型與分支型之微流道設計於光學系統下之成像效果,亦針對樣本流速的部分嘗試進行優化,最後成功得到多張樣本之切片影像,清晰地觀測到中國倉鼠卵巢細胞之粒線體結構,達到細胞內之可視化效果,並根據切片影像進行反摺積運算以及生物樣本之三維影像還原。
zh_TW
dc.description.abstractFor the live cell imaging, photobleaching and phototoxicity to the samples are the major reasons which influence the image quality. In view of the current excitation of light sheet fluorescence microscopy, an annular mask is commonly used to generate a Bessel beam. However, Bessel beam is always accompanied by the annoying side lobes to cause the additional photobleaching and phototoxicity. Therefore, we use the spatial light modulator to generate the lattice beam which can eliminate the side lobes by destructive interference which is so-called lattice light sheet microscopy. In our research, the imaging flow cytometry is developed by the combination of the light sheet fluorescence microscopy and the microfluidic system in hopes of the high resolution and high efficiency.
In our research, a two-layer microfluidic chip is designed for the compatibility of the geometry of the optical system in space. The master mold is fabricated by the photolithography. The first layer of the chip is designed for the sample observation, and it is made of the OSTEMER 322 crystal clear and the LUMOX® film. LUMOX® film is a material which has the refractive index near 1.33 to be compatible with the water dipping objectives in our system for avoiding the influence as light transmitting in different mediums. The second layer of the chip is designed to keep the chip from compressing by the objectives.
In our research, a microfluidic system in combination with optical system with high resolution, high efficiency, low photobleaching and low phototoxicity is successfully developed. The thickness of the light sheet in the microchannel is measured about 1~2 μm and the two types of the microchannel design are compared by the image quality under the system. Attempts are made for the optimization of the sample velocity and we successfully capture many slice images of the samples.
The structure of the mitochondrion in the CHO cell is clearly presented in the slice images, which demonstrates the intracellular visualization. Finally, deconvolution and 3D reconstruction are made from the slice images.
en
dc.description.provenanceMade available in DSpace on 2021-07-11T15:10:16Z (GMT). No. of bitstreams: 1
ntu-108-R06543030-1.pdf: 4034505 bytes, checksum: b80f17879d37586355ede5d48cb68b0b (MD5)
Previous issue date: 2019
en
dc.description.tableofcontents致謝 i
摘要 ii
ABSTRACT iii
目錄 iv
圖目錄 vi
符號目錄 ix
第一章 導論 1
1.1 前言 1
1.2 研究背景與動機 1
1.3 研究方法 2
第二章 文獻回顧 4
2.1 實驗室晶片 4
2.2 層光螢光顯微術 6
2.3 層光螢光顯微術用於實驗室晶片 10
2.4 貝索光束 13
2.5 光學晶格 19
第三章 研究方法與系統設計 25
3.1 光學系統之設計 25
3.2 微流體系統之設計 28
3.3 微流體系統之製程 34
3.4 檢測系統之設計 44
3.5 生物樣本之製備 46
第四章 實驗結果與討論 47
4.1 層光特性檢測 47
4.2 螢光粒子檢測 50
4.3 生物樣本檢測 52
第五章 結論與未來展望 58
5.1 結論 58
5.2 未來展望 59
參考文獻 60
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dc.language.isozh_TW-
dc.subject晶格層光顯微術zh_TW
dc.subject空間光調製器zh_TW
dc.subject影像流式細胞儀zh_TW
dc.subject實驗室晶片zh_TW
dc.subject黃光微影製程zh_TW
dc.subject光學切片zh_TW
dc.subject細胞內之可視化zh_TW
dc.subjectLattice light sheet microscopyen
dc.subjectIntracellular visualizationen
dc.subjectOptical sectioningen
dc.subjectPhotolithographyen
dc.subjectLab on a chipen
dc.subjectImaging flow cytometryen
dc.subjectSpatial light modulatoren
dc.title晶格層光顯微術用於微流體晶片影像流式細胞技術開發之研究zh_TW
dc.titleDevelopment of On-Chip Imaging Cytometry by Using Lattice Light Sheet Microscopyen
dc.typeThesis-
dc.date.schoolyear107-2-
dc.description.degree碩士-
dc.contributor.oralexamcommittee陳壁彰;范育睿;魏培坤zh_TW
dc.contributor.oralexamcommitteeBi-Chang Chen;Yu-Jui Fan;Pei-Kuen Weien
dc.subject.keyword晶格層光顯微術,空間光調製器,影像流式細胞儀,實驗室晶片,黃光微影製程,光學切片,細胞內之可視化,zh_TW
dc.subject.keywordLattice light sheet microscopy,Spatial light modulator,Imaging flow cytometry,Lab on a chip,Photolithography,Optical sectioning,Intracellular visualization,en
dc.relation.page63-
dc.identifier.doi10.6342/NTU201902116-
dc.rights.note未授權-
dc.date.accepted2019-08-12-
dc.contributor.author-college工學院-
dc.contributor.author-dept應用力學研究所-
dc.date.embargo-lift2024-08-19-
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