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  1. NTU Theses and Dissertations Repository
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Please use this identifier to cite or link to this item: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/75019
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dc.contributor.author吳秋逸zh_TW
dc.date.accessioned2021-07-01T08:11:24Z-
dc.date.available2021-07-01T08:11:24Z-
dc.date.issued1999
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dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/75019-
dc.description.abstract我們利用PCR的技術,合成γ-echistatin的基因,並將此基因轉殖到pQE-30載體上,再將載體送入大腸桿菌(Escherichia coli)以表現所要探討的抗凝血蛇毒-γ-echistatin。轉殖後的菌落,以PCR篩選出含有γ-echistatin基因菌體,再利用核酸定序儀以確定送入的基因為正確。篩選出的大腸桿菌,以IPTG誘導菌體,大量表現出C端含有γ-echistatin勝?鍵的蛋白。我們先利用親和性管柱(Ni-NTA Column)將此蛋白純化出來,再經還原劑、透析處理之後,以蛋白?enterokinase將C端的γ-echistatin切下,在enterokinase緩衝液的條件下,切下的γ-echistatin將自行摺疊成具活性的結構。此摺疊完成的γ-echistatin以HPLC純化出來,經質譜儀(mass spectrometry)、圓偏光二色光譜(circula dichroism)、和抗凝血活性的測試,其結果皆與原先由毒蛇身上萃取出來的γ-echistatin具有相同的性質。
我們利用點突變(Site-irected mutagenesis)的技術得到六個突變株,其中一株表現出的蛋白質(R24K),是將第24個胺基酸由精胺酸(arginine)變成了由離胺酸(lysine),另外兩株表現的蛋白(NMA21.22.23 RPT and NMA21.22.23 RPS)是將第21,22和第23個胺基酸由天門冬素(asparagine)甲硫氨酸(methionine)氨基丙酸(alanine)分別變成了精胺酸(arginine)比胳氨酸(proline)丁氨酸(threonine)和精胺酸(arginine)比胳氨酸(proline)絲氨酸(serine)。
由於γ-echistatin是屬於含有精胺酸-甘胺酸-天門冬胺酸序列(RGD sequence)的抗凝血蛇毒(disintegrin),若將其中的精胺酸改成由離胺酸,經本實驗結果證實,抗凝血的活性會降低3倍以上。將第21,22和第23個胺基酸由原本的天門冬素(asparagin)甲硫氨酸(methionine)氨基丙酸(alanine)分別變成了精胺酸(arginine)比胳氨酸(proline)丁氨酸(threonine)和精胺酸(arginine )比胳氨酸(proline)絲氨酸(serine),實驗的結果指出活性大約降低8-12倍。因此我們推論,第21,22和23個胺基酸可能和RGD loop有協同的作用,使得γ-echistatin 對於血小板上的細胞膜蛋白integrin αIIbβ3有較弱的親和力,而抑制血小板的凝集。
根據過去的實驗,將γ-echistatin的C端,從第46個胺基酸之後切除或再將(Cys8-Cys37)這對雙硫鍵都改成氨基丙酸(alanine),活性都約降低1.7倍,並且我們從實驗結果及電腦模擬的γ-echistatin結構推測第7-32這對雙硫鍵(Cys7-cys32)或第8-37這對雙硫鍵(Cys8-Cys37)在γ-echistatin摺疊時只須一對存在即可。且從實驗結果可推測易最快形成的第2-11這對雙硫鍵會影響7-32這對雙硫鍵(Cys7-Cys32)或第8-37(Cys8-Cys37)這對雙硫鍵的形成。而且由實驗結果可推測20-39這對雙硫鍵(Cys20-Cys39)在蛋白質摺疊時可能扮演重要的角色。
zh_TW
dc.description.abstractA gene encoding an RGD-containing platelet aggregation inhibitor, γ-echistatin, has been synthesized through PCR method using four overlapping oligonucleotides. The synthetic gene has Hind III sites at both ends for cloning into pQE-30 expression vector and an (Asp)4-Lys coding sequence recognized by enterokinase to cleave the fusion protein. The recombinant expression vector was transferred into M15 [pREP4] competent cells, the positive clones were identified by PCR and verified by DNA sequence analysis.
After over-expression by inducing with IPTG, crude γ-echistatin fusion protein was purified through Ni-NTA column. The crude fusion protein was first denatured and reduced to prevent mis-linkage of disulfide bonds. Then γ-echistatin fusion protein was cleaved by enterokinase and refolded. The recombinant, mature γ-echistatin was purified to homogeneity by HPLC, and verified by CD spectrum and mass spectrometry. This recombinant γ-echistatin was also assayed for inhibiting platelet aggregation and found to be identical to that of native γ-echistatin.
We also constructed the mutants of γ-echistatin R24N, C2A, C7A, C20A, NMA21.22.23 RPT and NMA21.22.23 RPS by site directed mutagenesis. The inhibitory potency of R24K mutant is only 3-fold less than that of the wild type. For the mutants, NMA21.22.23 RPT and NMA21.22.23 RPS, their inhibitory potency were decreased about 8-12 folds.
Our previous research has pointed out that the disulfide bond (8-37) might not be necessary in platelet aggregation inhibition because the inhibitory potency of des(45-49)-γ-echistatin and des(45-49)-[Ala8,37]-γ-echistatin both decrease about 1.7- fold. In summary, according to our results and on the basis of the structural model of γ-echistatin we speculated there were needed three disulfide bonds (2-11, 7-32, 20-39) or (2-11, 8-37, 20-39) during the folding pathway of γ-echistatin.
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dc.description.tableofcontents中文摘要…………1
Abstract…………3
List of Abbreviations…………4
Chapter 1: Introduction…………5
I. Motivations of the Dissertation…………6
II. Overview of the Integrins and Angiogenesis…………7
III. A Minireview of Echistatin…………10
The discovery of echistatin…………10
The synthetic and recombinant echistatin…………11
The structure of echistatin…………13
The overall structure of echistatin…………13
The important of RGD loop…………13
The importance of C-terminal domain of echistatin…………14
The disulfide bridges of echistatin…………15
IV. A Minireview of The Importance of Disuffide Bonds of Protein Folding Pathway…………16
Figures…………18
The interaction of echistatin 11
Chapter 2: The construction of γ-Echistatin…………23
I. PCR-based strategy for γ-echistatin gene synthesis…………24
Materials and Methods…………24
The megaprimer method…………24
Results and Discussion…………25
II. Cloning synthetic gene into pQE-30 vector…………27
Materials and Methods…………27
Ligation of the synthetic gene into pQE-30 vector…………27
Preparation of competent M15 [pREP4] cells…………28
Transformation…………28
Screening for positive clones…………29
Sequence analysis…………29
Results and Discussion…………29
Figures…………31
Chapter 3: The Expression of γ-Echistatin…………36
Materials and Methods…………37
Small-scale expression of γ-echistatin…………37
Growing large-scale expression culture…………37
Cell lysis and checking for cytoplasmic or periplasmic location…………37
Purification of cytoplasmic proteins by Ni-NTA column…………38
SDS-polyacrylamide gel electrophoresis…………38
Novex Tricine SDS Gel Electrophoresis…………39
The process of cleavage and refolding of γ-echistatin…………40
The modified process of cleavage and refolding of γ-echistatin…………40
Results and Discussion…………41
Expression of γ-echistatin…………41
Affinity purification of 6xHis-tagged proteins…………41
The process of cleavage and folding of recombinant γ-echistatin…………41
Figures…………43
Chapter 4: Site-Directed Mutagenesis of γ-Echistatin…………48
Materials and Methods…………64
Synthesis of oligonucletides…………49
Assembly of synthetic fragment by PCR…………49
Results and Discussion…………51
Site-directed mutagenesis…………51
Expression of R24K, C2A, C7A, C2OA, NMA21-23,,RPS,NMA21-23 RPT…………52
Purification of R24K, NMA21-23, RPS, NMA21-23, RPT…………52
LC-Mass of C2A, C7A and C20A…………52
Circular dichroism…………52
Figures…………53
Chapter 5: The Molecular Model of γ-Echistatin & its mutant…………64
Method…………65
Sequence alignment…………65
Initial model…………65
Model refinement…………66
Model evalution…………66
γ-Echistatin mutant modeling…………66
Result and Discusion………………67
Chapter 6: Biological activity of γ-Echistatin………………74
Materials and Methods………………75
Determining protein concentration………………75
Platelet aggregation assay………………76
Results………………76
Chapter 7: Discussion and Prospect………………77
Reference………………82
dc.language.isozh-TW
dc.titleγ-Echistatin 突變株種的探討zh_TW
dc.titleStudy on γ-Echistatin mutantsen
dc.date.schoolyear87-2
dc.description.degree碩士
dc.relation.page90
dc.rights.note未授權
dc.contributor.author-dept生命科學院zh_TW
dc.contributor.author-dept生化科學研究所zh_TW
Appears in Collections:生化科學研究所

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