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| DC 欄位 | 值 | 語言 |
|---|---|---|
| dc.contributor.advisor | 鍾嘉綾(Chia-Lin Chung) | |
| dc.contributor.author | Szu-Yu Chen | en |
| dc.contributor.author | 陳思聿 | zh_TW |
| dc.date.accessioned | 2021-06-17T06:04:07Z | - |
| dc.date.available | 2025-11-05 | |
| dc.date.copyright | 2020-11-23 | |
| dc.date.issued | 2020 | |
| dc.date.submitted | 2020-11-06 | |
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| dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/71594 | - |
| dc.description.abstract | 水稻為重要糧食作物，由Fusarium fujikuroi引起之水稻徒長病能造成稻米在產量與品質方面的損失，受徒長病菌感染的水稻植株於秧苗期產生複雜病徵，包括徒長、纖細瘦弱、葉片夾角大，嚴重者可導致植株死亡，藉由有效的稻種消毒，徒長病以往得以被良好控制，然而，近幾年於許多亞洲國家皆紛紛報導徒長病之疫情嚴重度增加及抗藥性菌株的出現。為防治水稻徒長病，種植抗病品種為一有效、經濟且環保的可能替代策略。本研究首先自全球核心種原rice diversity panel 1與雙親本雜交族群 (台稉16號x Budda) 中，藉由全基因體關聯定位與連鎖定位尋找徒長病之抗病基因座，共定位出16個抗病基因座，其中qBK1.7區域與已報導之qBK1和qFfR1重疊，並成功以IR64 x Nipponbare族群，透過連鎖定位方式完成驗證，針對20個抗感表現不同的水稻品種於該區域進行序列比對，結果顯示Os01g0601625與Os01g0601675有較高可能性與徒長病抗性相關；利用台稉16號x Budda之166個F9重組自交系進行連鎖定位分析，定位出一個新穎之基因座qBK2.1，及一個與先前報導之qBK1.3位置重疊之qBK1.8。接著，自定位結果與先前之轉錄體分析中挑選出九個候選基因，以即時定量聚合酶連鎖反應或水稻突變體驗證其基因功能性，基因表現量定量結果顯示茉莉酸之訊息傳導可能參與水稻對徒長病菌侵染之反應，且施用甲基茉莉酸能延遲水稻感病品種的病徵發展。徒長病之抗病育種方面，自台農71號 x Budda、台稉16號x IR78581-12-3-2-2、台農71號 x IR78581-12-3-2-2族群中，透過人工接種方式，於F4至F7世代進行抗性選拔，篩選出17個對四株本土代表性徒長病菌菌株具有抗性之水稻品系；而藉由新開發之分子標誌檢測22個臺灣商業品種可能帶有之徒長病抗性，大多數品種於qBK1.4、qBK1.7、qBK2.1、qBK10.1不帶有抗病基因型，這些基因座可作為後續育種改良之標的；為增加田間應用性，亦嘗試建構抗病基因堆疊之品系，逐步取得能同時對徒長病、稻熱病及白葉枯病具抗性之水稻品系。期盼此研究能提供水稻對徒長病抗性研究之基礎，並能為未來防治策略擬定與抗病育種提供助益。 | zh_TW |
| dc.description.abstract | Rice is an important staple food crop. Bakanae disease caused by Fusarium fujikuroi caused considerable reduction in rice yield and quality. Infected rice plants showed complex symptoms such as overgrowth, slender, a large leaf angle, and even death at seedling stage. Seed disinfection with chemical fungicides was effective for bakanae control for a long time. However, in recent years, the increasing epidemics of bakanae disease and emergence of fungicide-resistant fungal isolates were reported in several Asian countries. Use of resistant cultivars can be an effective, economic, and eco-friendly alternative control approach for bakanae disease control. In the first part of this study, loci conferring resistance to bakanae disease were identified using rice diversity panel 1 and Taikeng16 x Budda population by genome-wide association mapping and linkage mapping, respectively. A total of 16 quantitative trait loci (QTLs) were mapped. A candidate QTL (qBK1.7) was co-localized with the previously reported qBK1 and qFfR1 and validated by linkage analysis of a recombinant inbred line (RIL) population derived from IR64 x Nipponbare. Full-length sequencing and comparison of qBK1.7 in 20 rice accessions indicated that Os01g0601625 and Os01g0601675 may control bakanae resistance. Linkage mapping conducted using a population of 166 F9 RILs derived from Taikeng16 x Budda identified two resistant QTLs: qBK2.1 is a novel QTL and qBK1.8 was overlapped with the previous reported qBK1.3. Secondly, nine candidate genes selected based on QTL mapping and previous transcriptome analysis were verified using real-time quantitative reverse transcription PCR (qRT-PCR) or transgenic rice lines. The qRT-PCR result showed that jasmonic acid signaling may involve in rice in response to F. fujikuroi infection and the application of methyl jasmonate delayed bakanae disease development in susceptible cultivar (Zerawchanica karatals). Finally, resistance breeding for bakanae disease was conducted. F4 to F7 progeny lines from the crosses of Tainung 71 (TNG71) x Budda, TK16 x IR78581-12-3-2-2, and TNG71 x IR78581-12-3-2-2 were subjected to artificial inoculation and resistance selection. Total 17 lines resistant to four representative local isolates of F. fujikuroi were obtained. For future resistance breeding, potential bakanae resistance in 22 Taiwan cultivars was examined using newly developed molecular markers. Most cultivars did not carry resistance alleles at qBK1.4, qBK1.7, qBK2.1, and qBK10.1. These QTLs are proper target for resistance improvement. Moreover, breeding for pyramiding lines for resistance to bakanae disease, rice blast, and bacterial blight is underway. We hope that this study can provide the fundamental basis of bakanae resistance to facilitate the development of control strategy and future resistance breeding. | en |
| dc.description.provenance | Made available in DSpace on 2021-06-17T06:04:07Z (GMT). No. of bitstreams: 1 U0001-0511202017541200.pdf: 54239443 bytes, checksum: 5ea5a508d9c18851d65ec04f3338b3c2 (MD5) Previous issue date: 2020 | en |
| dc.description.tableofcontents | 口試委員會審定書 i 致謝 ii 中文摘要 iii ABSTRACT iv CONTENTS vi LIST OF TABLES xi LIST OF FIGURES xii LIST OF SUPPLEMENTAL TABLES xiii LIST OF SUPPLEMENTAL FIGURES xiv Chapter 1 Introduction 1 1.1 Research motivations 2 1.2 Rice 3 1.2.1 Importance 3 1.2.2 Germplasm and collections 3 1.3 Bakanae disease 4 1.3.1 Pathogen 4 1.3.2 Occurrence and epidemics 5 1.3.3 Pathogen population 6 1.3.4 Pathogenesis 7 1.3.5 Symptoms 7 1.3.6 Evaluation of bakanae resistance 8 1.3.7 Disease control 9 1.3.8 Genetics of bakanae resistance in rice 10 1.4 QTL mapping 10 1.4.1 Genome-wide association study (GWAS) 11 1.4.2 Linkage mapping 12 1.4.3 QTL validation 12 1.5 References 14 1.6 Figures 20 Chapter 2 Genome-wide association mapping of bakanae resistance QTLs using rice diversity panel 1 21 2.1 Abstract 22 2.1.1 Background 22 2.1.2 Results 22 2.1.3 Conclusions 23 2.2 Background 24 2.3 Materials and methods 26 2.3.1 Plant and fungal materials 26 2.3.2 Evaluation of bakanae disease resistance 27 2.3.3 Genome-wide association mapping 29 2.3.4 Linkage mapping 30 2.3.5 Sequencing and candidate gene analysis for qBK1.7 31 2.3.6 Statistical analysis 32 2.4 Results 32 2.4.1 Bakanae disease resistance in RDP1 32 2.4.2 Genome-wide association mapping in RDP1 33 2.4.3 Resistance and susceptibility haplotypes in RDP1 34 2.4.4 Validation of qBK1.7 in the IR64 x Nipponbare population 34 2.4.5 Sequence analysis of qBK1.7 35 2.5 Discussion 36 2.6 Conclusions 40 2.7 References 41 2.8 Tables 45 2.9 Figures 47 2.10 Supplemental Materials 54 Chapter 3 Mapping of bakanae resistance QTLs using the TK16 x Budda RIL population 106 3.1 Abstract 107 3.2 Introduction 108 3.3 Materials and methods 110 3.3.1 Plant materials 110 3.3.2 Evaluation of bakanae disease resistance 110 3.3.3 Genotyping-by-sequencing 111 3.3.4 Genetic map construction and linkage mapping 111 3.3.5 Marker development 112 3.4 Results 113 3.4.1 Evaluation of bakanae resistance in the RIL population 113 3.4.2 Genetic map construction 114 3.4.3 Detection of QTLs for bakanae resistance 114 3.4.4 Candidate genes in QTL regions 114 3.4.5 Marker development 115 3.5 Discussion 116 3.6 References 119 3.7 Tables 124 3.8 Figures 126 3.9 Supplemental Materials 130 Chapter 4 Verification of candidate genes conferring bakanae resistance 135 4.1 Abstract 136 4.2 Introduction 138 4.3 Materials and methods 139 4.3.1 Plant and fungal materials 139 4.3.2 qRT-PCR analysis 140 4.3.3 MeJA treatment 141 4.3.4 Verification of candidate genes using CRISPR-Cas9 system 142 4.3.5 Candidate genes verified using gain-of-function 143 4.4 Results 144 4.4.1 qRT-PCR analysis of JA-signaling related genes 144 4.4.2 MeJA-induced resistance to F. fujikuroi 145 4.4.3 Effect of MeJA on the viability of F. fujikuroi 146 4.4.4 Verification of candidate genes using CRISPR-Cas9 system 146 4.4.5 Candidate genes verified using gain-of-function 147 4.5 Discussion 147 4.6 References 151 4.7 Figures 155 4.8 Tables 157 4.9 Supplemental Materials 160 Chapter 5 Improvement of the resistance of Taiwan rice cultivars to bakanae disease 168 5.1 Abstract 169 5.2 Introduction 170 5.3 Materials and methods 172 5.3.1 Plant materials 172 5.3.2 Breeding for bakanae resistance 173 5.3.3 Screening of bakanae resistance alleles in Taiwan cultivars 174 5.3.4 Breeding for multiple disease resistance 174 5.4 Results 175 5.4.1 Rice breeding for bakanae resistance 175 5.4.2 Screening of bakanae resistance in Taiwan cultivars 176 5.4.3 Breeding for multiple disease resistance 176 5.5 Discussion 177 5.6 References 180 5.7 Tables 182 5.8 Figures 188 Chapter 6 Conclusions 190 6.1 References 195 Appendices 197 Publications 198 | |
| dc.language.iso | en | |
| dc.title | 水稻抗徒長病基因座之分子定位與育種 | zh_TW |
| dc.title | Molecular mapping and breeding for loci conferring bakanae resistance in rice | en |
| dc.type | Thesis | |
| dc.date.schoolyear | 109-1 | |
| dc.description.degree | 博士 | |
| dc.contributor.oralexamcommittee | 黃振文(Jenn-Wen Huang),劉瑞芬(Ruey-Fen Liou),賴明信(Ming-Hsin Lai),董致韡(Chih-Wei Tung),吳東鴻(Dong-Hong Wu) | |
| dc.subject.keyword | 水稻徒長病,Fusarium fujikuroi,全基因體關聯定位,連鎖定位,抗病育種, | zh_TW |
| dc.subject.keyword | bakanae disease,Fusarium fujikuroi,genome-wide association mapping,linkage mapping,resistance breeding, | en |
| dc.relation.page | 249 | |
| dc.identifier.doi | 10.6342/NTU202004325 | |
| dc.rights.note | 有償授權 | |
| dc.date.accepted | 2020-11-06 | |
| dc.contributor.author-college | 生物資源暨農學院 | zh_TW |
| dc.contributor.author-dept | 植物病理與微生物學研究所 | zh_TW |
| 顯示於系所單位： | 植物病理與微生物學系 | |
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