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完整後設資料紀錄
DC 欄位 | 值 | 語言 |
---|---|---|
dc.contributor.advisor | 韓玉山(Yu-San Han) | |
dc.contributor.author | Ming-Hui Hsieh | en |
dc.contributor.author | 謝明惠 | zh_TW |
dc.date.accessioned | 2021-06-17T00:20:06Z | - |
dc.date.available | 2013-06-29 | |
dc.date.copyright | 2012-06-29 | |
dc.date.issued | 2012 | |
dc.date.submitted | 2012-06-25 | |
dc.identifier.citation | References
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dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/66047 | - |
dc.description.abstract | 族群遺傳分析常被應用於檢測分布廣泛的物種,藉以經營管理此物種的資源。在日本鰻,於過去研究利用微衛星DNA分析其族群遺傳結構之結果指出,其族群應為單一逢機交配,並無時間、空間上之分化。然而,日本鰻資源於1970年代開始產生顯著的下降,此現象是否會對其族群產生瓶頸效應、基因漂變以及近親交配之影響則尚無研究。在本研究中,我們利用7組多型性微衛星DNA,分析自1986年到2012年間於東亞緯度22°N 至 40°N十三個採集地取得之日本鰻鰻苗樣本,評估其基因多樣性。實驗結果發現,等位基因豐富度 (Allele richness = 14.78) 以及異型核子觀測值 (observed heterozygosity=0.68–0.85) 皆顯示日本鰻族群結構依舊維持高度基因多樣性,且近親交配程度低 (FIS= 0.066)。以時間尺度來看,各族群間並無顯著分化FST= 0.0069;近26年間有效族群數的估計依舊穩定維持,並無顯著改變 (有效族群數量範圍為24.7~無限大)。總結以上結果,日本鰻各年間族群結構依舊相當穩定,但之前可能發生過瓶頸效應。也就是說,就過去26年而言,日本鰻族群遺傳結構並未有明顯改變。 | zh_TW |
dc.description.abstract | Population genetic analysis is commonly used to examine, manage, and conserve widespread species. The Japanese Eel (Anguilla japonica) is widely distributed in East Asia and its population size has dramatically declined since the 1970s. Recent studies using microsatellite loci indicate that panmixia was observed in A. japonica. There is no significant differentiation in the temporal or spatial scale of A. japonica, yet the historical demographics are not k now, such as whether the species suffered genetic bottlenecks, genetic drift, and/or inbreeding depression. We used 7 polymorphic microsatellite DNA loci from 13 geographic locations in East Asia, spanning from 22°N to 40°N, from 1985 to 2012 to understand the genetic diversity of A. japonica. Our data show that A. japonica still exhibits high genetic diversity in terms of average allelic richness (14.78) and observed heterozygosity (0.68–0.85). Inbreeding is rare (FIS= 0.066), and there is no genetic differentiation among annual cohorts (FST= 0.0069). The estimated mean effective population size (Ne) among the 26 years is modest (24.7 to infinity). In conclusion, there is no significant differentiation among annual groups of A. japonica. Simulation studies suggest that the population genetics of A. japonica has been stable for the past two decades, but might experience bottleneck in the past. No evidence of genetic bottleneck is found in the 26 annual cohorts. Accordingly, these data suggest that the population of A. japonica, under the current situation, does not face severe threat of losing genetic diversity. | en |
dc.description.provenance | Made available in DSpace on 2021-06-17T00:20:06Z (GMT). No. of bitstreams: 1 ntu-101-R99b45013-1.pdf: 847997 bytes, checksum: f8d3464c722b1801d8ba04a2e14dabf2 (MD5) Previous issue date: 2012 | en |
dc.description.tableofcontents | Content
口試委員會審定書 i 致謝 ii 中文摘要 iii Abstract iv Content 1 Table content 3 Figure content 4 Introduction 6 Materials and methods 14 Sample collection 14 DNA extraction 14 PCR and genotyping 15 Data analysis 16 Genetic diversity among annual cohorts 16 Genetic differentiation among annual cohorts 16 Genetic relationship among annual cohorts 17 Population reduction tests 17 Results 20 Genetic diversity among annual cohorts 20 Genetic differentiation among annual cohorts 20 Genetic relationship among annual cohorts 22 Population reduction tests 22 Discussion 24 Genetic diversity of Anguilla japonica 24 Genetic relationship among annual cohorts 27 Absence of bottleneck event for annual cohort among resent decades 27 Conclusion 36 References 37 Table content Table 1. Sampling locations and sampling size of glass eels of Anguilla japonica collected in Taiwan, China, Korea and Japan. 51 Table 2. Characteristics of 7 microsatellite DNA loci in Anguilla japonica, including repeat motif, primer sequence, annealing temperature, accession number and fluorescen label 52 Table 3. Genetic variability of population parameters at seven microsatellite loci of Anguilla japonica in East Asia among 26 year recruits 53 Table 4. Genetic diversity of Anguilla japonica at 7 microsatellite loci in East Asia among 26 year recruits 55 Table 5. Pairwise genetic difference index (FST) (below diagonal) and significance levels (above diagonal) of Anguilla japonica in East Asia among 26 year recruits 56 Table 6. Nm values of Anguilla japonica in East Asia among 26 year recruits 57 Table 7. Results of the tests for population decline of Anguilla japonica in East Asia among 26 year recruits 58 Figure content Figure 1. Sampling locations of Anguilla japonica glass eel in coastal waters of Taiwan, China, Korea and Japan. 59 Figure 2-1. Yearly allele size frequencies of AJMS-3 60 Figure 2-2. Yearly allele size frequencies of AJMS-4 63 Figure 2-3. Yearly allele size frequencies of AJMS-5 66 Figure 2-4. Yearly allele size frequencies of AJMS-7 69 Figure 2-5. Yearly allele size frequencies of AJMS-8 72 Figure 2-6. Yearly allele size frequencies of AJMS-14 75 Figure 2-7. Yearly allele size frequencies of AJMS-15 78 Figure 3. Regression of the pairwise genetic [FST/ (1-FST)] on temporal distance among the 26 year recruits 81 Figure 4. Regression of the pairwise genetic distance (Da) on temporal distance among the 26 year recruits 81 Figure 5. NJ tree depicting genetic relationship based on Nei’s (1983) genetic distance (DA) among 26 year recruits 82 Figure 6. UPGMA tree depicting genetic relationship based on Nei’s (1983) genetic distance (DA) among 26 year recruits 83 Figure 7. Histogram showing the proportion of alleles occurring at particular frequencies in the Anguilla japonica population combined for all 7 loci 84 | |
dc.language.iso | en | |
dc.title | 日本鰻族群遺傳結構之長期變化 | zh_TW |
dc.title | Long term changes of population genetic structure of the Japanese eel Anguilla japonica | en |
dc.type | Thesis | |
dc.date.schoolyear | 100-2 | |
dc.description.degree | 碩士 | |
dc.contributor.oralexamcommittee | 曾萬年(Wann-Nian Tzeng),陳韋仁(Wei-Jen Chen),吳書平(Shu-Ping Wu) | |
dc.subject.keyword | 日本鰻,微衛星DNA,族群遺傳,瓶頸效應,基因漂變,近親交配, | zh_TW |
dc.subject.keyword | Japanese Eel,microsatellite DNA,population genetics,genetic bottleneck effect,genetic drift,inbreed, | en |
dc.relation.page | 84 | |
dc.rights.note | 有償授權 | |
dc.date.accepted | 2012-06-25 | |
dc.contributor.author-college | 生命科學院 | zh_TW |
dc.contributor.author-dept | 漁業科學研究所 | zh_TW |
顯示於系所單位: | 漁業科學研究所 |
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