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  1. NTU Theses and Dissertations Repository
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請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/63845
完整後設資料紀錄
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dc.contributor.advisor張繼堯(Chi-Yao Chang)
dc.contributor.authorZheng-Lin Yangen
dc.contributor.author楊政霖zh_TW
dc.date.accessioned2021-06-16T17:20:42Z-
dc.date.available2017-08-20
dc.date.copyright2012-08-20
dc.date.issued2012
dc.date.submitted2012-08-16
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Hemler, M.E. (2003). Tetraspanin proteins mediate cellular penetration, invasion, and fusion events and define a novel type of membrane microdomain. Annual review of cell and developmental biology 19, 397-422.
Kitadokoro, K., Bordo, D., Galli, G., Petracca, R., Falugi, F., Abrignani, S., Grandi, G., and Bolognesi, M. (2001). CD81 extracellular domain 3D structure: insight into the tetraspanin superfamily structural motifs. The EMBO journal 20, 12-18.
Levy, S., and Shoham, T. (2005). The tetraspanin web modulates immune-signalling complexes. Nature reviews Immunology 5, 136-148.
Levy, S., Todd, S.C., and Maecker, H.T. (1998). CD81 (TAPA-1): a molecule involved in signal transduction and cell adhesion in the immune system. Annual review of immunology 16, 89-109.
Loffler, S., Lottspeich, F., Lanza, F., Azorsa, D.O., ter Meulen, V., and Schneider-Schaulies, J. (1997). CD9, a tetraspan transmembrane protein, renders cells susceptible to canine distemper virus. Journal of virology 71, 42-49.
Maecker, H.T., Todd, S.C., and Levy, S. (1997). The tetraspanin superfamily: molecular facilitators. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 11, 428-442.
Martin, F., Roth, D.M., Jans, D.A., Pouton, C.W., Partridge, L.J., Monk, P.N., and Moseley, G.W. (2005). Tetraspanins in viral infections: a fundamental role in viral biology? Journal of virology 79, 10839-10851.
Miyado, K., Yamada, G., Yamada, S., Hasuwa, H., Nakamura, Y., Ryu, F., Suzuki, K., Kosai, K., Inoue, K., Ogura, A.. (2000). Requirement of CD9 on the egg plasma membrane for fertilization. Science (New York, NY) 287, 321-324.
Nakamura, Y., Handa, K., Iwamoto, R., Tsukamoto, T., Takahasi, M., and Mekada, E. (2001). Immunohistochemical distribution of CD9, heparin binding epidermal growth factor-like growth factor, and integrin alpha3beta1 in normal human tissues. The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society 49, 439-444.
Nannenga, B.L., and Baneyx, F. (2012). Folding Engineering Strategies for Efficient Membrane Protein Production in E. coli. Methods in molecular biology (Clifton, NJ) 899, 187-202.
Penas, P.F., Garcia-Diez, A., Sanchez-Madrid, F., and Yanez-Mo, M. (2000). Tetraspanins are localized at motility-related structures and involved in normal human keratinocyte wound healing migration. The Journal of investigative dermatology 114, 1126-1135.
Pileri, P., Uematsu, Y., Campagnoli, S., Galli, G., Falugi, F., Petracca, R., Weiner, A.J., Houghton, M., Rosa, D., Grandi, G. (1998). Binding of hepatitis C virus to CD81. Science (New York, NY) 282, 938-941.
Rath, A., Glibowicka, M., Nadeau, V.G., Chen, G., and Deber, C.M. (2009). Detergent binding explains anomalous SDS-PAGE migration of membrane proteins. Proceedings of the National Academy of Sciences of the United States of America 106, 1760-1765.
Schmid, E., Zurbriggen, A., Gassen, U., Rima, B., ter Meulen, V., and Schneider-Schaulies, J. (2000). Antibodies to CD9, a tetraspan transmembrane protein, inhibit canine distemper virus-induced cell-cell fusion but not virus-cell fusion. Journal of virology 74, 7554-7561.
Seigneuret, M., Delaguillaumie, A., Lagaudriere-Gesbert, C., and Conjeaud, H. (2001). Structure of the tetraspanin main extracellular domain. A partially conserved fold with a structurally variable domain insertion. The Journal of biological chemistry 276, 40055-40064.
Shaw, A.R., Domanska, A., Mak, A., Gilchrist, A., Dobler, K., Visser, L., Poppema, S., Fliegel, L., Letarte, M., and Willett, B.J. (1995). Ectopic expression of human and feline CD9 in a human B cell line confers beta 1 integrin-dependent motility on fibronectin and laminin substrates and enhanced tyrosine phosphorylation. The Journal of biological chemistry 270, 24092-24099.
Singethan, K., Muller, N., Schubert, S., Luttge, D., Krementsov, D.N., Khurana, S.R., Krohne, G., Schneider-Schaulies, S., Thali, M., and Schneider-Schaulies, J. (2008). CD9 clustering and formation of microvilli zippers between contacting cells regulates virus-induced cell fusion. Traffic (Copenhagen, Denmark) 9, 924-935.
Stipp, C.S., Kolesnikova, T.V., and Hemler, M.E. (2003). Functional domains in tetraspanin proteins. Trends in biochemical sciences 28, 106-112.
von Lindern, J.J., Rojo, D., Grovit-Ferbas, K., Yeramian, C., Deng, C., Herbein, G., Ferguson, M.R., Pappas, T.C., Decker, J.M., Singh, A., et al. (2003). Potential role for CD63 in CCR5-mediated human immunodeficiency virus type 1 infection of macrophages. Journal of virology 77, 3624-3633.
Willett, B., Hosie, M., Shaw, A., and Neil, J. (1997). Inhibition of feline immunodeficiency virus infection by CD9 antibody operates after virus entry and is independent of virus tropism. The Journal of general virology 78 ( Pt 3), 611-618.
dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/63845-
dc.description.abstract點帶石斑魚(Epinephelus coioides)是目前水產養殖生物中具有高度經濟價值的魚種。在台灣,石斑魚產業的發展受限於許多因素,其中以病毒的威脅最為嚴重。GIV (grouper iridovirus)為一種二十面體的DNA病毒,可以造成從稚魚到成魚階段極高的致死率。本實驗室在2011年以GIV病毒液感染活體點帶石斑魚,發現到點帶石斑魚的腎臟與胰臟細胞中CD9的表現量有大幅上升的趨勢存在,而使用poly I:C的刺激下亦有大量的誘導表現,但是對於LPS並無任何反應,因此本研究想要進一步了解點帶石斑魚CD9的特性,並探討其與與虹彩病毒的交互作用。CD9是一種屬於四穿膜蛋白家族的醣蛋白。四穿膜蛋白家族成員間及相關的附屬蛋白會有形成四穿膜蛋白網絡的特性,這個特性使四穿膜蛋白具有訊息傳導的功能。目前已知許多疾病致病機轉中可以看到四穿膜蛋白家族成員的參與,如瘧疾以及病毒的感染。
本實驗設計了三種點帶石斑魚CD9基因的專一性引子進而以5’RACE得到CD9 cDNA 5’端的序列,結合先前本實驗室的點帶石斑魚cDNA資料庫中已知不完整3’端片段的資訊,我們得到點帶石斑魚的開放閱讀框架全長為720鹼基對。分析所轉譯出的239胺基酸序列具有典型的四穿膜區及兩個膜外環區,而具功能的大膜外環區也會有保守的CCG motif,進一步和不同物種CD9進行多重序列比對及親緣演化樹,分析顯示點帶石斑魚的CD9基因在演化上的保守性。此外,我們利用大腸桿菌生產石斑魚CD9重組蛋白,並以此為抗原,成功的製備出抗CD9的多株抗體,並且將CD9全長序列送進真核細胞中表現,配合免疫螢光染色,我們觀察到點帶石斑魚的CD9融合蛋白確實表現在核膜及細胞膜上。最後我們把GK細胞株以GIV病毒液進行感染試驗,結果顯示GK細胞在GIV不同的感染時程中會有不同程度的CD9表現量。
zh_TW
dc.description.abstractOrange-spotted grouper (Epinephelus coioides) is one of the high valued target species in aquaculture. The fiercest menace to the grouper industry is the breakout of virus disease. GIV (grouper iridovirus) is an icosahedron DNA virus and could cause highly lethal rate from fry to adult stage. In 2011, our laboratory found that the orange-spotted grouper kidney and spleen CD9 gene expression level could increase obviously after GIV intraperitoneal injection. Also, the tendency of CD9 gene expression was in accordance with GIV as we injected poly I:C. But there was no significance increasing phenomenon while we used LPS as artificial stimulator. This research engages in revealing the characteristic of orange-spotted grouper CD9 gene and discusses the interplay between GIV and CD9. CD9 , a surface glycoprotein, belongs to the tetraspanin family. The members of this family appear to form large integrated signaling complexes or tetraspanin-enriched microdomains (TEM) by their associated molecules. Tetraspanins are also known to play roles in pathology of infectious disease such as malara and numerous viral infections. We designed three CD9 gene specific primers to sequence the 5‘ end of orange-spotted grouper CD9 gene. Base on the partial sequence form the orange-spotted kidney cDNA library databank, we obtained the complete sequence and deduced the open reading frame length of orange-spotted grouper CD9 gene to 720 bp. We analyzed the 239 amino acid sequence which spans the plasma membrane four times, producing two extracellular loops, and processes a conserved CCG motif. We compared multiple sequence alignmernt of orange-spotted grouper CD9 to that of other vertebrate, and plotted the phylogenic tree to realize the conservation of orange-spotted grouper CD9 gene. Moreover, we produced the CD9 recombinant protein to generate polyclonal mouse anti-CD9 antibody. Meanwhile, we also tansfected the CD9 expression vectors into Hela and GK cells to explore CD9 subcellular localization. The immunochemistry observation showed that the CD9 fusion protein is mainly expressed on the nucleus and plasma membrane. Finally ,we challenged GK cell with GIV (moi=1) in 12 hrs time course and semi-quantated the RNA expression level of CD9 by RT-PCR. The result gives the sign of the fact that GK could alter the CD9 transcription magnitude according to the GIV infection elapsed time.en
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Previous issue date: 2012
en
dc.description.tableofcontents目錄
摘要 I
Abstract II
目錄 IV
圖目次 VII
表目次 VIII
附錄 IX
第一章 前言 1
1.1 石斑魚簡介與台灣養殖概況 1
1.2 虹彩病毒(Iridovirus) 3
1.2.1 虹彩病毒分類 3
1.2.2 虹彩病毒與魚類的關係 4
1.3 四穿膜蛋白家族(Tetraspanin superfamily) 4
1.3.1 四穿膜蛋白家族在生物體中扮演的角色 4
1.3.2 四穿膜蛋白家族的結構特徵 5
1.3.3 四穿膜蛋白網絡 5
1.3.4 四穿膜蛋白網絡結構 6
1.3.5 四穿膜蛋白與病毒之間的交互關係 6
1.4 研究動機 7
第二章 材料與方法 9
實驗材料與藥品試劑 9
實驗方法 15
2.1 5’端快速擴增cDNA 末端法( Rapid Amplification of cDNA End,5’RACE) 15
2.2 蛋白表現載體選殖建構 15
2.3 轉形作用 (Transformation) 17
2.4 斑點印漬(Dot Blot) 17
2.5 大腸桿菌重組蛋白之表現 18
2.6大腸桿菌表現重組蛋白之純化 18
2.7 Anti-CD9 LEL 多株抗體製備 19
2.8 細胞培養 (cell culture) 19
2.8.1 細胞株及培養條件 20
2.8.2 細胞繼代 (passage) 培養 20
2.9 細胞轉染 (Transfection) 20
2.10 SDS-PAGE 電泳 20
2.11 西方墨點法 (Western blot) 21
2.11.1 一級抗體Alkaline phosphatase呈色 21
2.11.2 二級抗體Alkaline phosphatase呈色 21
2.11.3 二級抗體Horseradish Peroxidase呈色 22
2.12 實驗魚隻 22
2.13 RNA萃取 23
2.13.1 點帶石斑魚臟器RNA萃取 23
2.13.2 GK細胞株以GIV攻毒後RNA萃取 23
2.14 RT-PCR 24
2.15 免疫螢光染色 24
第三章 結果 26
3.1 點帶石斑魚CD9全長序列選殖與親緣性分析 26
3.2 點帶石斑魚CD9重組蛋白表現與純化 26
3.3 點帶石斑魚CD9多株抗體製備 28
3.4 點帶石斑魚CD9在GK及Hela細胞株的表現位置 28
3.5 CD9在點帶石斑魚魚體中各臟器組織的表現量 29
3.6 點帶石斑魚及GK細胞株在感染GIV不同時間點CD9的表現量 29
第四章 討論 30
參考文獻 33

圖目次
圖一、 以5’端快速擴增cDNA 末端法( Rapid Amplification of cDNA End,RACE) 選殖點帶石斑魚CD9基因5’端序列 37
圖二、 點帶石斑魚CD9基因之核酸序列與胺基酸序列 39
圖三、 點帶石斑魚CD9全長胺基酸序列穿膜區域預測 40
圖四、 點帶石斑魚與其它物種的CD9胺基酸序列比對分析 41
圖五、 點帶石斑魚與其它物種的CD9胺基酸序列親緣性分析 43
圖六、在不同蛋白表現載體及誘導時間下大腸桿菌BL-21 (DE3) 表現點帶石斑魚CD9 LEL-His tag融合蛋白的表現量分析 44
圖七、 利用Ni2+親和性層析管柱純化石斑魚CD9 LEL-His tag融合蛋白 45
圖八、小鼠抗CD9 LEL多株抗體之西方墨點辨識能力分析 47
圖九、 pcDNA3CF / CD9轉染於GK與Hela細胞內的CD9融合蛋白西方墨點分析 48
圖十、pcDNA3CF/CD9 轉染於GK與Hela細胞中的CD9融合蛋白表現位置
50
圖十一、 CD9在點帶石斑魚臟器內表現量分析 51
圖十二、 GK細胞感染GIV病毒後不同時間點之CD9表現 52
表目次
表一、 實驗使用之引子序列 53
附錄
附錄一、 四穿膜蛋白結構 54
dc.language.isozh-TW
dc.subject點帶石斑魚zh_TW
dc.subjectCD9zh_TW
dc.subject石斑虹彩病毒zh_TW
dc.subject四穿膜蛋白zh_TW
dc.subjectorange-spotted grouperen
dc.subjectTetraspaninen
dc.subjectCD9en
dc.subjectGIVen
dc.title點帶石斑魚CD9基因之選殖、特性鑑定及感染虹彩病毒之表現分析zh_TW
dc.titleCloning and characterization of orange-spotted grouper (Epinephelus coioides) CD9, and its expression analysis in response to GIV infectionen
dc.typeThesis
dc.date.schoolyear100-2
dc.description.degree碩士
dc.contributor.oralexamcommittee林正輝(Cheng-Hui Lin),蘇建國(Jian-Guo Su)
dc.subject.keyword四穿膜蛋白,點帶石斑魚,CD9,石斑虹彩病毒,zh_TW
dc.subject.keywordTetraspanin,orange-spotted grouper,CD9,GIV,en
dc.relation.page54
dc.rights.note有償授權
dc.date.accepted2012-08-17
dc.contributor.author-college生命科學院zh_TW
dc.contributor.author-dept漁業科學研究所zh_TW
顯示於系所單位:漁業科學研究所

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