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  1. NTU Theses and Dissertations Repository
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請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/60048
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor鄧述諄(Shu-Chun Teng)
dc.contributor.authorChia-Ming Chenen
dc.contributor.author陳家民zh_TW
dc.date.accessioned2021-06-16T09:52:46Z-
dc.date.available2022-01-10
dc.date.copyright2017-02-24
dc.date.issued2017
dc.date.submitted2017-01-12
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dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/60048-
dc.description.abstract細胞至產生後會經歷一連串複雜的原因而逐漸走向喪失生理功能的過程,此過程稱之為老化。為了維持基因的穩定性,酵母菌Saccharomyces cerevisiae藉由將端粒連接在細胞核膜上,以避免進行不正常的telomere-telomere recombination。過去的研究指出當酵母菌中的tlc1缺失時,端粒的縮短會促使細胞啟動telomere-telomere recombination來維持端粒的正常長度,並產生type I 和II survivors。所以我從兩個錨定(anchorage)作用途徑(telomearse-Mps3-Ku80和Sir4-Esc1)去探討影響 telomere 與細胞膜結合。其中我透過螢光共軛焦顯微鏡去觀察並評估過量表現Mps3的N端truncated蛋白在wild type及tlc1的酵母菌中,端粒連接在細胞核膜的程度與比例。此外再透過solid plate assay檢查esc1是否會影響telomere-telomere recombination。另一方面,之前的研究也發現藉由熱量限制調控老化相關的訊息傳遞路徑能有效地延長各物種的平均壽命和延緩老化。但是對於細胞為了適應外在環境改變來延長細胞壽命的確切調控機制目前仍有待探討。因此分別將酵母菌培養在含有不同葡萄糖濃度(2%,0.5%)的培養基中,並透過液相層析串聯式質譜儀和蛋白質體學來分析在熱量限制調控下蛋白的磷酸化位點及磷酸化狀態的變異。接著利用Gene ontology和SGD phenotype資料庫的分析,我們一共選擇了15個蛋白磷酸化位點做後續的研究和分析,並透過單一磷酸化位點或雙磷酸化位點點突變來模擬蛋白磷酸化狀態的改變,且觀察在不同的壓力下酵母菌的生長情形是否會被影響。上述研究的結果顯示皆無明顯差異和影響,然而細胞內可能還存在著其他調控老化相關的途徑,因此我們未來還需要做更進一步的探討和分析。zh_TW
dc.description.abstractCell from born to death may face aging which was characterized by progressive loss of physiological functions. To avoid abnormal change of genome and telomere-telomere recombination, telomeres are usually anchored at the nuclear envelope in budding yeast. Previous studies indicated that once telomeres become critically short, telomere - telomere recombination is promoted to maintain the normal length of telomere and generate the type I or type II survivors in the telomerase-negative yeast. To investigate the influence of the anchorage between telomere and nuclear envelope, we use fluorescence and confocal microscope to examine that the influence of Mps3-N’ on telomere anchorage when yeast loses telomerase. Moreover, we also use the solid plate assay to examine whether Esc1 suppresses telomere-telomere recombination in telomerase-negative yeast. On the other hand, early studies indicated that the influence of calorie restriction (CR) on some transduction signaling pathways which are associated with mechanisms of aging could effectively extend the lifespan in many organisms but the precise mechanism is not well-known as yet. In this study, yeast cells which were treated with YPAD medium containing 2% or 0.5% glucose grown at 30℃. Then we employed the quantitative proteomics, LC–MS / MS, Gene ontology, and the SGD phenotype to analyze phosphorylation state of protein which may be modulated. In total, the phospho-mimic or phospho-abolishing mutants are generated from 15 candidates to test the growth of yeast under different sorts of stress. However, the results showed that no obvious difference. There may be some alternative pathways that regulate the mechanisms of aging which existing in yeast.en
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dc.description.tableofcontents口試委員會審定書. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .i
誌謝. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ii
摘要. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .iii
ABSTRACT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .. . . . . . . . . . . . . . . . . . . . . . iv
INTRODUCTION . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1
MATERIALS & METHODS . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .5
The preparation of yeast strain and constructions
The preparation and operation of yeast culture, genomic DNA, enzyme digestion, gel electrophoresis, and analysis of Southern blot
The analysis of telomere restriction fragment (TRF)
The preparation and operation of fluorescence and confocal microscope
Sample Preparation for analysis of LC-MS/MS and quantitative proteomics
The analysis of Gene Ontology
The analysis of PhosphoGRID
The analysis of functional test
RESULTS . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .10
DISCUSSION . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 16
FIGURES . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 19
Fig.1 Analysis of anchorage between telomere and nuclear envelope in telomerase-negative yeast.
Fig.2 Analysis of the influence ofesc1 on telomere-telomere recombination in telomerase-negative yeast.
Fig.3 The functional flow diagram of analysis of cell cycle and the stress response under CR
Fig.4 There is no obvious difference between phospho-mimic or phospho- abolishing mutants from identified candidates and wild type by the functional test
TABLES . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 27
Table.1 Yeast strains and construction used in this study
Table.2 Primers used in this study
Table.3 Point mutation site of pop-out strains
Table.4 Cell cycle associated deletion mutants and the results of functional test
Table.5 Cell cycle associated phospho-mimic or phospho-abolishing mutant and the results of functional test
Table.6 The stress response associated candidates and the results of functional test
Table.7 The stress response associated phospho-mimic or phospho-abolishing mutant candidates and the results of functional test
REFERENCES . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 47
APPENDIXS . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 57
(1) The influence of calorie restriction on S. cerevisiae by analyzation of quantitative proteomics and LC–MS/MS
(2) Analysis of Gene Ontology (GO) terms under calorie restriction
(3) The analysis of functional test and tandem affinity purification followed by mass spectrometry from Ids2.
(4) The candidates for functional analysis.
dc.language.isoen
dc.subject磷酸化zh_TW
dc.subject突變zh_TW
dc.subject端粒zh_TW
dc.subject錨定zh_TW
dc.subject熱量限制zh_TW
dc.subjectphosphorylationen
dc.subjecttelomereen
dc.subjectanchorageen
dc.subjectmutationen
dc.subjectcalorie restrictionen
dc.title探討端粒錨定作用和熱量限制調控的相關性路徑zh_TW
dc.titleAnalysis of telomere anchorage and calorie restriction
pathways
en
dc.typeThesis
dc.date.schoolyear105-1
dc.description.degree碩士
dc.contributor.oralexamcommittee林敬哲(Jing-Jer Lin),劉雅雯(Ya-Wen Liu)
dc.subject.keyword端粒,錨定,磷酸化,突變,熱量限制,zh_TW
dc.subject.keywordtelomere,anchorage,mutation,calorie restriction,phosphorylation,en
dc.relation.page60
dc.identifier.doi10.6342/NTU201700055
dc.rights.note有償授權
dc.date.accepted2017-01-12
dc.contributor.author-college醫學院zh_TW
dc.contributor.author-dept微生物學研究所zh_TW
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