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請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/55304
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor吳世雄
dc.contributor.authorTing-Tzu Huangen
dc.contributor.author黃婷資zh_TW
dc.date.accessioned2021-06-16T03:55:43Z-
dc.date.available2024-02-06
dc.date.copyright2015-02-04
dc.date.issued2014
dc.date.submitted2014-12-18
dc.identifier.citationReferences
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dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/55304-
dc.description.abstract角蛋白酶是一種蛋白質水解酵素,他能降解結構非常堅硬且一般酵素無法分解的的角蛋白。近年來,這類角蛋白酶已漸漸受到大眾的重視,無論是在環境保護或是生物技術應用方面,都具有很高的應用價值。然而,雖然目前已有很多角蛋白酶被發現,但其複雜的水解機制仍然存留許多不解。
先前,我們成功地從台灣本土嗜熱菌分離出一個新的角蛋白酶,從結構比對結果,我們發現一個與之結構極為相似的蛋白質,其命名為aqualysin,此蛋白酶來自另一株更耐高溫的嗜熱菌Thermus aquaticus,卻從未有相關文獻指出其具有角蛋白酶的活性;因此,我們利用偶氮角蛋白 (azokeratin) 當作水解受質,證實aqualysin確實具有高活性的角蛋白水解功能,並測得其活性最佳條件。此外,藉由分析具有不同功能性片段的aqualysin,我們發現此蛋白酶必須在有N端內分子伴護蛋白區塊 (intramolecular chaperone, NAQ) 的存在下,才能將蛋白適當摺疊成具有活性的構型。為了進一步證明NAQ是否具有角蛋白水解功能的記憶,並引導蛋白酶摺疊成具有角蛋白酶活性的構型,我們將NAQ置換到來自台灣本土嗜熱菌,其不具角蛋白酶活性的類枯草桿菌蛋白SPR2216之中。幸運地,SPR2216在嵌入NAQ之後,成功的獲得了原本並不具備的角蛋白酶活性;而這也證明了NAQ 對於幫助蛋白酶區塊獲得角蛋白水解功能記憶的過程中,扮演了非常重要的角色。因此,運用此基因工程的方法,將能提供有效的資訊來建構出新型且具有不同特性的角蛋白酶。至於NAQ是如何幫助蛋白酶摺疊,以及更細節的分子機制,還需要更進一步的研究探討。
zh_TW
dc.description.abstractKeratinases are proteolytic enzymes responsible for the degradation of highly recalcitrant keratin substrates. They have gradually captured the attention in the realms of environmental and biotechnological application. Although these enzymes have widely been discovered, the complex mechanism of keratinolysis has not yet been well-understood.
Previously, we successfully identified a novel keratinase from Meiothermus taiwanensis. Based on the structural similarity, we found a subtilisin-like protease from Thermus aquaticus named aqualysin, which has not yet been reported as a keratinase. Based on azokeratin assays, we confirmed that aqualysin is a highly efficient keratinase. Furthermore, the results from the truncate studies suggested that propeptide of aqualysin (NAQ), an intramolecular chaperone, was an indispensable domain for the keratinolytic activity.
To verify whether NAQ possessed the protein memory for keratinolysis and guided protease to fold as a keratinase, we swapped NAQ to a subtilisin-like protease, SPR2216 from Meiothermus taiwanensis, which possessed no keratinolytic activity. Fortunately, we successfully obtained NAQ-fused SPR2216 which possessed gain-of-function for keratinolysis. Importantly, we demonstrated the significant role of NAQ for protease domains to acquire the memory of “keratinase-fold”. These findings would be very useful for generating new keratinases with additional characteristics. However, more studies should be made to further elucidate the detailed molecular mechanisms of how NAQ helped protease domain fold.
en
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dc.description.tableofcontentsContents
摘要 IV
Abstract V
1. Introduction 1
1.1 Keratinase 1
1.2 Subtilisin-like proteases 4
Figure 1. Domain arrangement of subtilisin protease. 4
Figure 2. propeptide-mediated protein folding mechanism 6
1.3 Aqualysin 7
Figure 3. Domains of aqualysin and their functions 7
1.4 Protein memory 9
1.5 Domain swapping 11
1.6 Thermophile 12
1.7 Aims and backgrounds of this study 14
2. Materials and Methods 15
2.1. Cloning of aqualysin, its derivatives, and other subtilisin-like proteases 15
2.2. Protein expression and purification 20
2.3. Keratinase screen 21
2.4. Milk/Feather degradation assay 21
2.5. Synthesis of azokeratin 22
2.6. Azokeratin degradation assay 23
2.7. Ninhydrin assay 23
2.8. Collagen degradation assay 24
2.9. Disulfide reductase assay 24
2.10. Keratin azure degradation assay 25
2.11. FITC-a-casein assay 25
3. Results and Discussions 27
3.1. Validation of aqualysin as a keratin-degrading enzyme 27
Figure 4. Validation of aqualysin as a keratinase 28
3.2. Identification of keratinase-related domains in aqualysin 29
Figure 5. Identification of keratinase-related domains in aqualysin 30
3.3. pH and temperature effects on aqualysin 31
Figure 6. Purification of aqualysin 33
Figure 7. pH and temperature effects on aqualysin 34
Figure 8. Collagen degradation assay of aqualysin 35
3.4. Mechanism for aqualysin-mediated keratinolysis 36
Figure 9. Pure aqualysin could degrade intact feathers. 38
Figure 10. Aqualysin did not possess disulfide reductase activity 39
Figure 11. Mechanisms for keratin degradation 40
Figure 12. Structure of aqualysin. 41
3.5. Domain swapping of subtilisin-related proteases 42
3.5.1 Hypothesis for NAQ-guided keratinase-fold 43
Figure 13. Rationale for NAQ-guided intramolecular chaperone swapping.49
3.5.2 The targets of subtilisin-like proteases for domain swapping 45
3.5.3 SPR2216 served as a good candidate for NAQ-swapping 45
Figure 14. Sequence alignment of aqualysin and SPR2216 46
3.5.4 NAQ-fused MSPR2216 possessed novel function in keratinolysis 47
Figure 15. The lysate of NMChimera possessed keratinolytic activity. 50
Figure 16. Purified well-folded NMWT protease 51
Figure 17. Purification of NMChimera 52
Figure 18. NMChimera could refold as an active keratinase 53
Figure 19. Purified NMChimera possessed keratinolytic activity 54
Figure 20. NMChimera showed less keratinolytic activity than aqualysin 57
Figure 21. Hypothesis for sequence-induced pocket width difference 58
3.5.6 Subtilisin E was a novel keratinase 59
Figure 22. SDS-PAGE of purified subtilisin E 60
Figure 23. Subtilisin was a novel keratinase 61
References 62
Appendix 70
Appendix 1. The example results for milk/feather degradation assay 70
Appendix 2. Sequence alignments among aqualysin and target proteases 71
Appendix 3. Optimization for keratin azure assay 72
dc.language.isoen
dc.subject角蛋白?zh_TW
dc.subject類枯草桿菌蛋白zh_TW
dc.subjectAqualysinzh_TW
dc.subject內分子伴護蛋白?zh_TW
dc.subject功能區置換zh_TW
dc.subjectsubtilisin-like proteaseen
dc.subjectkeratinaseen
dc.subjectdomain swappingen
dc.subjectintramolecular chaperoneen
dc.subjectaqualysinen
dc.title運用基因工程嵌入伴護蛋白功能區塊以建構新型的角蛋白酶zh_TW
dc.titleEngineering novel keratinases through an intramolecular chaperone swapping approachen
dc.typeThesis
dc.date.schoolyear103-1
dc.description.degree碩士
dc.contributor.oralexamcommittee梁博煌,徐駿森,花國鋒,何孟樵
dc.subject.keyword角蛋白?,類枯草桿菌蛋白,Aqualysin,內分子伴護蛋白?,功能區置換,zh_TW
dc.subject.keywordkeratinase,subtilisin-like protease,aqualysin,intramolecular chaperone,domain swapping,en
dc.relation.page72
dc.rights.note有償授權
dc.date.accepted2014-12-19
dc.contributor.author-college生命科學院zh_TW
dc.contributor.author-dept生化科學研究所zh_TW
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