請用此 Handle URI 來引用此文件:
http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/55097完整後設資料紀錄
| DC 欄位 | 值 | 語言 |
|---|---|---|
| dc.contributor.advisor | 陳振中 | |
| dc.contributor.author | Wan-Cheng Yu | en |
| dc.contributor.author | 余婉琤 | zh_TW |
| dc.date.accessioned | 2021-06-16T03:47:07Z | - |
| dc.date.available | 2020-02-25 | |
| dc.date.copyright | 2015-02-25 | |
| dc.date.issued | 2015 | |
| dc.date.submitted | 2015-01-29 | |
| dc.identifier.citation | CH1
1. Cohen, A. S. in Amyloidosis (Marrink, J. & M.D, M. H. V. R.) 3–19 (Springer Netherlands, 1986). at <http://link.springer.com/chapter/10.1007/978-94-009-4309-4_1> 2. Sipe, J. D. & Cohen, A. S. Review: history of the amyloid fibril. J. Struct. Biol. 130, 88–98 (2000). 3. Eisenberg, D. & Jucker, M. The amyloid state of proteins in human diseases. Cell 148, 1188–1203 (2012). 4. Wiltzius, J. J. W. Structural Studies of Islet Amyloid Polypeptide. (ProQuest, 2008). 5. Puchtler, H., Sweat, F. & Levine, M. On the Binding of Congo Red by Amyloid. J Histochem Cytochem 10, 355–364 (1962). 6. Sunde, M. & Blake, C. The structure of amyloid fibrils by electron microscopy and X-ray diffraction. Adv. Protein Chem. 50, 123–159 (1997). 7. Shirahama, T. & Cohen, A. S. HIGH-RESOLUTION ELECTRON MICROSCOPIC ANALYSIS OF THE AMYLOID FIBRIL. J Cell Biol 33, 679–708 (1967). 8. Serpell, L. C., Benson, M., Liepnieks, J. J. & Fraser, P. E. Structural analyses of fibrinogen amyloid fibrils. Amyloid 14, 199–203 (2007). 9. Eanes, E. D. & Glenner, G. G. X-Ray Diffraction Studies on Amyloid Filaments. J Histochem Cytochem 16, 673–677 (1968). 10. Fersht, A. Structure and Mechanism in Protein Science: A Guide to Enzyme Catalysis and Protein Folding. (W. H. Freeman, 1999). 11. Goldschmidt, L., Teng, P. K., Riek, R. & Eisenberg, D. Identifying the amylome, proteins capable of forming amyloid-like fibrils. Proc Natl Acad Sci U S A 107, 3487–3492 (2010). 12. Plemper, R. K. & Wolf, D. H. Retrograde protein translocation: ERADication of secretory proteins in health and disease. Trends Biochem. Sci. 24, 266–270 (1999). 13. Dobson, C. M. Protein misfolding, evolution and disease. Trends in Biochemical Sciences 24, 329–332 (1999). 14. Sakahira, H., Breuer, P., Hayer-Hartl, M. K. & Hartl, F. U. Molecular chaperones as modulators of polyglutamine protein aggregation and toxicity. Proc Natl Acad Sci U S A 99, 16412–16418 (2002). 15. Muchowski, P. J. & Wacker, J. L. Modulation of neurodegeneration by molecular chaperones. Nat Rev Neurosci 6, 11–22 (2005). 16. Kitamura, A. & Kubota, H. Amyloid oligomers: dynamics and toxicity in the cytosol and nucleus. FEBS Journal 277, 1369–1379 (2010). 17. Ross, C. A. & Poirier, M. A. What is the role of protein aggregation in neurodegeneration? Nat Rev Mol Cell Biol 6, 891–898 (2005). 18. Chiti, F. & Dobson, C. M. Protein Misfolding, Functional Amyloid, and Human Disease. Annual Review of Biochemistry 75, 333–366 (2006). 19. Kumar, S. & Walter, J. Phosphorylation of amyloid beta (Aβ) peptides - a trigger for formation of toxic aggregates in Alzheimer’s disease. Aging (Albany NY) 3, 803–812 (2011). 20. Wilson, M. R., Yerbury, J. J. & Poon, S. Potential roles of abundant extracellular chaperones in the control of amyloid formation and toxicity. Molecular BioSystems 4, 42 (2008). 21. Iannuzzi, C., Maritato, R., Irace, G. & Sirangelo, I. Misfolding and Amyloid Aggregation of Apomyoglobin. International Journal of Molecular Sciences 14, 14287–14300 (2013). 22. Gillam, J. E. & MacPhee, C. E. Modelling amyloid fibril formation kinetics: mechanisms of nucleation and growth. J. Phys.: Condens. Matter 25, 373101 (2013). 23. Uversky, V. N. et al. Biophysical Properties of the Synucleins and Their Propensities to Fibrillate INHIBITION OF α-SYNUCLEIN ASSEMBLY BY β- AND γ-SYNUCLEINS. J. Biol. Chem. 277, 11970–11978 (2002). 24. Chayen, N. E. & Saridakis, E. Protein crystallization: from purified protein to diffraction-quality crystal. Nat Meth 5, 147–153 (2008). 25. Mankar, S., Anoop, A., Sen, S. & Maji, S. K. Nanomaterials: amyloids reflect their brighter side. Nano Reviews 2, (2011). 26. Jucker, M. & Walker, L. C. Self-propagation of pathogenic protein aggregates in neurodegenerative diseases. Nature 501, 45–51 (2013). 27. Leonhardt, R. M., Vigneron, N., Rahner, C. & Cresswell, P. Proprotein Convertases Process Pmel17 during Secretion. J Biol Chem 286, 9321–9337 (2011). 28. Alexandrescu, A. T. Amyloid accomplices and enforcers. Protein Sci 14, 1–12 (2005). 29. Cohen, A. S. & Calkins, E. THE ISOLATION OF AMYLOID FIBRILS AND A STUDY OF THE EFFECT OF COLLAGENASE AND HYALURONIDASE. J Cell Biol 21, 481–486 (1964). 30. Forstl, H. & Howard, R. Recent studies on dementia senilis and brain disorders caused by atheromatous vascular disease: by A. Alzheimer, 1898. Alzheimer Dis Assoc Disord 5, 257–264 (1991). 31. Yamaguchi, H., Hirai, S., Morimatsu, M., Shoji, M. & Harigaya, Y. Diffuse type of senile plaques in the brains of Alzheimer-type dementia. Acta Neuropathol 77, 113–119 (1988). 32. Berchtold, N. C. & Cotman, C. W. Evolution in the Conceptualization of Dementia and Alzheimer’s Disease: Greco-Roman Period to the 1960s. Neurobiology of Aging 19, 173–189 (1998). 33. Tiraboschi, P., Hansen, L. A., Thal, L. J. & Corey-Bloom, J. The importance of neuritic plaques and tangles to the development and evolution of AD. Neurology 62, 1984–1989 (2004). 34. Aging, N. I. on. Scientific Images-AD Brain. National Institute on Aging (2011). at <http://www.nia.nih.gov/alzheimers/scientific-images> 35. Selkoe, D. J. The cell biology of β-amyloid precursor protein and presenilin in Alzheimer’s disease. Trends in Cell Biology 8, 447–453 (1998). 36. Shibayama, H. & Kitoh, J. Electron microscopic structure of the alzheimer’s neurofibrillary changes in case of atypical senile dementia. Acta Neuropathol 41, 229–234 (1978). 37. Glenner, G. G. & Wong, C. W. Alzheimer’s disease: Initial report of the purification and characterization of a novel cerebrovascular amyloid protein. Biochemical and Biophysical Research Communications 120, 885–890 (1984). 38. Selkoe, D. J. Alzheimer’s Disease: Genes, Proteins, and Therapy. Physiological Reviews 81, 741–766 (2001). 39. Selkoe, D. J. Normal and Abnormal Biology of the beta-Amyloid Precursor Protein. Annual Review of Neuroscience 17, 489–517 (1994). 40. Willnow, T. E., Petersen, C. M. & Nykjaer, A. VPS10P-domain receptors — regulators of neuronal viability and function. Nat Rev Neurosci 9, 899–909 (2008). 41. Selkoe, D. J. Translating cell biology into therapeutic advances in Alzheimer’s disease. Nature 399, A23–A31 (1999). 42. Hardy, J. A. & Higgins, G. A. Alzheimer’s disease: the amyloid cascade hypothesis. Science 256, 184–185 (1992). 43. Mann, D. M. The pathological association between Down syndrome and Alzheimer disease. Mech. Ageing Dev. 43, 99–136 (1988). 44. Nistor, M. et al. Alpha- and beta-secretase activity as a function of age and beta-amyloid in Down syndrome and normal brain. Neurobiology of Aging 28, 1493–1506 (2007). 45. Price, J. L. & Morris, J. C. Tangles and plaques in nondemented aging and ‘preclinical’ Alzheimer’s disease. Annals of Neurology 45, 358–368 (1999). 46. Holmes, C. et al. Long-term effects of Abeta42 immunisation in Alzheimer’s disease: follow-up of a randomised, placebo-controlled phase I trial. Lancet 372, 216–223 (2008). 47. Harper, J. D., Wong, S. S., Lieber, C. M. & Lansbury, P. T. Observation of metastable Abeta amyloid protofibrils by atomic force microscopy. Chem. Biol. 4, 119–125 (1997). 48. Walsh, D. M., Lomakin, A., Benedek, G. B., Condron, M. M. & Teplow, D. B. Amyloid beta-protein fibrillogenesis. Detection of a protofibrillar intermediate. J. Biol. Chem. 272, 22364–22372 (1997). 49. Lambert, M. P. et al. Diffusible, nonfibrillar ligands derived from Abeta1-42 are potent central nervous system neurotoxins. Proc. Natl. Acad. Sci. U.S.A. 95, 6448–6453 (1998). 50. McLean, C. A. et al. Soluble pool of Abeta amyloid as a determinant of severity of neurodegeneration in Alzheimer’s disease. Ann. Neurol. 46, 860–866 (1999). 51. Selkoe, D. J. Alzheimer Disease: Mechanistic Understanding Predicts Novel Therapies. Ann Intern Med 140, 627–638 (2004). 52. Meinhardt, J., Sachse, C., Hortschansky, P., Grigorieff, N. & Fandrich, M. Aβ(1-40) Fibril Polymorphism Implies Diverse Interaction Patterns in Amyloid Fibrils. Journal of Molecular Biology 386, 869–877 (2009). 53. Lu, J.-X. et al. Molecular structure of β-amyloid fibrils in Alzheimer’s disease brain tissue. Cell 154, 1257–1268 (2013). 54. Harper, J. D., Wong, S. S., Lieber, C. M. & Lansbury, P. T. Assembly of Aβ Amyloid Protofibrils: An in Vitro Model for a Possible Early Event in Alzheimer’s Disease. Biochemistry 38, 8972–8980 (1999). 55. Walsh, D. M. et al. Amyloid β-Protein Fibrillogenesis STRUCTURE AND BIOLOGICAL ACTIVITY OF PROTOFIBRILLAR INTERMEDIATES. J. Biol. Chem. 274, 25945–25952 (1999). 56. Haass, C. & Selkoe, D. J. Soluble protein oligomers in neurodegeneration: lessons from the Alzheimer’s amyloid beta-peptide. Nat. Rev. Mol. Cell Biol. 8, 101–112 (2007). 57. Chimon, S. & Ishii, Y. Capturing intermediate structures of Alzheimer’s beta-amyloid, Abeta(1-40), by solid-state NMR spectroscopy. J. Am. Chem. Soc. 127, 13472–13473 (2005). 58. Chimon, S. et al. Evidence of fibril-like β-sheet structures in a neurotoxic amyloid intermediate of Alzheimer’s β-amyloid. Nat Struct Mol Biol 14, 1157–1164 (2007). 59. Sakono, M. & Zako, T. Amyloid oligomers: formation and toxicity of Abeta oligomers. FEBS J. 277, 1348–1358 (2010). 60. Benilova, I., Karran, E. & De Strooper, B. The toxic Aβ oligomer and Alzheimer’s disease: an emperor in need of clothes. Nat. Neurosci. 15, 349–357 (2012). 61. Walsh, D. M., Tseng, B. P., Rydel, R. E., Podlisny, M. B. & Selkoe, D. J. The oligomerization of amyloid beta-protein begins intracellularly in cells derived from human brain. Biochemistry 39, 10831–10839 (2000). 62. Walsh, D. M. et al. Naturally secreted oligomers of amyloid beta protein potently inhibit hippocampal long-term potentiation in vivo. Nature 416, 535–539 (2002). 63. Lesne, S. et al. A specific amyloid-beta protein assembly in the brain impairs memory. Nature 440, 352–357 (2006). 64. Jacobsen, J. S. et al. Early-onset behavioral and synaptic deficits in a mouse model of Alzheimer’s disease. PNAS 103, 5161–5166 (2006). 65. Lefterov, I. et al. Memory deficits in APP23/Abca1+/- mice correlate with the level of Aβ oligomers. ASN Neuro 1, (2009). 66. Glabe, C. G. Conformation-dependent antibodies target diseases of protein misfolding. Trends in Biochemical Sciences 29, 542–547 (2004). 67. Glabe, C. G. Structural Classification of Toxic Amyloid Oligomers. J. Biol. Chem. 283, 29639–29643 (2008). 68. Wang, X., Perry, G., Smith, M. A. & Zhu, X. Amyloid-beta-derived diffusible ligands cause impaired axonal transport of mitochondria in neurons. Neurodegener Dis 7, 56–59 (2010). 69. Barghorn, S. et al. Globular amyloid beta-peptide oligomer - a homogenous and stable neuropathological protein in Alzheimer’s disease. J. Neurochem. 95, 834–847 (2005). 70. Nimmrich, V. et al. Amyloid β Oligomers (Aβ1–42 Globulomer) Suppress Spontaneous Synaptic Activity by Inhibition of P/Q-Type Calcium Currents. J. Neurosci. 28, 788–797 (2008). 71. Deshpande, A., Kawai, H., Metherate, R., Glabe, C. G. & Busciglio, J. A Role for Synaptic Zinc in Activity-Dependent Aβ Oligomer Formation and Accumulation at Excitatory Synapses. J. Neurosci. 29, 4004–4015 (2009). 72. Kayed, R. et al. Annular protofibrils are a structurally and functionally distinct type of amyloid oligomer. J. Biol. Chem. 284, 4230–4237 (2009). 73. Lasagna-Reeves, C. A., Glabe, C. G. & Kayed, R. Amyloid-β annular protofibrils evade fibrillar fate in Alzheimer disease brain. J. Biol. Chem. 286, 22122–22130 (2011). 74. Hoshi, M. et al. Spherical aggregates of beta-amyloid (amylospheroid) show high neurotoxicity and activate tau protein kinase I/glycogen synthase kinase-3beta. Proc. Natl. Acad. Sci. U.S.A. 100, 6370–6375 (2003). 75. Noguchi, A. et al. Isolation and characterization of patient-derived, toxic, high mass amyloid beta-protein (Abeta) assembly from Alzheimer disease brains. J. Biol. Chem. 284, 32895–32905 (2009). 76. Hartley, D. M. et al. Protofibrillar intermediates of amyloid beta-protein induce acute electrophysiological changes and progressive neurotoxicity in cortical neurons. J. Neurosci. 19, 8876–8884 (1999). 77. Lord, A. et al. An amyloid-beta protofibril-selective antibody prevents amyloid formation in a mouse model of Alzheimer’s disease. Neurobiol. Dis. 36, 425–434 (2009). 78. Lambert, M. P. et al. Vaccination with soluble Abeta oligomers generates toxicity-neutralizing antibodies. J. Neurochem. 79, 595–605 (2001). 79. Klein, W. L., Krafft, G. A. & Finch, C. E. Targeting small Abeta oligomers: the solution to an Alzheimer’s disease conundrum? Trends Neurosci. 24, 219–224 (2001). 80. Pepys, M. B. Pathogenesis, diagnosis and treatment of systemic amyloidosis. Philos Trans R Soc Lond B Biol Sci 356, 203–211 (2001). 81. Maynard, C. J., Bush, A. I., Masters, C. L., Cappai, R. & Li, Q.-X. Metals and amyloid-beta in Alzheimer’s disease. Int J Exp Pathol 86, 147–159 (2005). 82. Chen, W.-T., Liao, Y.-H., Yu, H.-M., Cheng, I. H. & Chen, Y.-R. Distinct effects of Zn2+, Cu2+, Fe3+, and Al3+ on amyloid-beta stability, oligomerization, and aggregation: amyloid-beta destabilization promotes annular protofibril formation. J. Biol. Chem. 286, 9646–9656 (2011). 83. James A Duce, Ashley I Bush & Paul A Adlard. Role of Amyloid-β-metal Interactions in Alzheimer’s Disease. 641–659 (2011). 84. Bush, A. I. et al. Rapid induction of Alzheimer A beta amyloid formation by zinc. Science 265, 1464–1467 (1994). 85. Huang, X. et al. Cu(II) Potentiation of Alzheimer Aβ Neurotoxicity CORRELATION WITH CELL-FREE HYDROGEN PEROXIDE PRODUCTION AND METAL REDUCTION. J. Biol. Chem. 274, 37111–37116 (1999). 86. Yoshiike, Y. et al. New insights on how metals disrupt amyloid beta-aggregation and their effects on amyloid-beta cytotoxicity. J. Biol. Chem. 276, 32293–32299 (2001). 87. Klug, G. M. J. A. et al. β-Amyloid protein oligomers induced by metal ions and acid pH are distinct from those generated by slow spontaneous ageing at neutral pH. European Journal of Biochemistry 270, 4282–4293 (2003). 88. Solomonov, I. et al. Zn2+-Aβ40 Complexes Form Metastable Quasi-spherical Oligomers That Are Cytotoxic to Cultured Hippocampal Neurons. J. Biol. Chem. 287, 20555–20564 (2012). 89. Sharma, A. K., Pavlova, S. T., Kim, J., Kim, J. & Mirica, L. M. The effect of Cu(2+) and Zn(2+) on the Aβ42 peptide aggregation and cellular toxicity. Metallomics 5, 1529–1536 (2013). 90. Liu, S. T., Howlett, G. & Barrow, C. J. Histidine-13 is a crucial residue in the zinc ion-induced aggregation of the A beta peptide of Alzheimer’s disease. Biochemistry 38, 9373–9378 (1999). 91. Curtain, C. C. et al. Alzheimer’s disease amyloid-beta binds copper and zinc to generate an allosterically ordered membrane-penetrating structure containing superoxide dismutase-like subunits. J. Biol. Chem. 276, 20466–20473 (2001). 92. Hane, F. & Leonenko, Z. Effect of Metals on Kinetic Pathways of Amyloid-β Aggregation. Biomolecules 4, 101–116 (2014). 93. Tycko, R. Solid State NMR Studies of Amyloid Fibril Structure. Annu Rev Phys Chem 62, 279–299 (2011). 94. Petkova, A. T. et al. A structural model for Alzheimer’s β-amyloid fibrils based on experimental constraints from solid state NMR. at <http://www.pnas.org> 95. Petkova, A. T., Yau, W.-M. & Tycko, R. Experimental constraints on quaternary structure in Alzheimer’s β-amyloid fibrils. Biochemistry 45, 498–512 (2006). 96. Paravastu, A. K., Leapman, R. D., Yau, W.-M. & Tycko, R. Molecular structural basis for polymorphism in Alzheimer’s beta-amyloid fibrils. Proc. Natl. Acad. Sci. U.S.A. 105, 18349–18354 (2008). 97. Bertini, I., Gonnelli, L., Luchinat, C., Mao, J. & Nesi, A. A new structural model of Aβ40 fibrils. J. Am. Chem. Soc. 133, 16013–16022 (2011). 98. Williams, A. D. et al. Structural properties of Abeta protofibrils stabilized by a small molecule. Proc. Natl. Acad. Sci. U.S.A. 102, 7115–7120 (2005). 99. Macao, B. et al. Recombinant amyloid beta-peptide production by coexpression with an affibody ligand. BMC Biotechnology 8, 82 (2008). 100. Sandberg, A. et al. Stabilization of neurotoxic Alzheimer amyloid-β oligomers by protein engineering. Proc Natl Acad Sci U S A 107, 15595–15600 (2010). 101. Scheidt, H. A., Morgado, I., Rothemund, S., Huster, D. & Fandrich, M. Solid-State NMR Spectroscopic Investigation of Aβ Protofibrils: Implication of a β-Sheet Remodeling upon Maturation into Terminal Amyloid Fibrils. Angew. Chem. Int. Ed. 50, 2837–2840 (2011). 102. Syme, C. D. & Viles, J. H. Solution 1H NMR investigation of Zn2+ and Cd2+ binding to amyloid-beta peptide (Abeta) of Alzheimer’s disease. Biochim. Biophys. Acta 1764, 246–256 (2006). 103. Danielsson, J., Pierattelli, R., Banci, L. & Graslund, A. High-resolution NMR studies of the zinc-binding site of the Alzheimer’s amyloid β-peptide. FEBS Journal 274, 46–59 (2007). 104. Tougu, V. et al. Zn(II)- and Cu(II)-induced non-fibrillar aggregates of amyloid-beta (1-42) peptide are transformed to amyloid fibrils, both spontaneously and under the influence of metal chelators. J. Neurochem. 110, 1784–1795 (2009). 105. Mithu, V. S. et al. Zn(++) binding disrupts the Asp(23)-Lys(28) salt bridge without altering the hairpin-shaped cross-β Structure of Aβ(42) amyloid aggregates. Biophys. J. 101, 2825–2832 (2011). CH2 1. Finder, V. H., Vodopivec, I., Nitsch, R. M. & Glockshuber, R. The Recombinant Amyloid-β Peptide Aβ1–42 Aggregates Faster and Is More Neurotoxic than Synthetic Aβ1–42. Journal of Molecular Biology 396, 9–18 (2010). 2. Shih, Y.-P. et al. High-throughput screening of soluble recombinant proteins. Protein Sci. 11, 1714–1719 (2002). 3. Kim, E.-K. et al. Large-scale production of soluble recombinant amyloid-β peptide 1-42 using cold-inducible expression system. Protein Expr. Purif. 86, 53–57 (2012). 4. transformation http://elmipapel.blogspot.tw/2011/12/what-i-also-like.html. at <http://elmipapel.blogspot.tw/2011/12/what-i-also-like.html> 5. Marley, J., Lu, M. & Bracken, C. A method for efficient isotopic labeling of recombinant proteins. J Biomol NMR 20, 71–75 (2001). 6. Hengen, P. N. Purification of His-Tag fusion proteins from Escherichia coli. Trends in Biochemical Sciences 20, 285–286 (1995). 7. Affinity Chromatography.htm. 8. Berg, J. M., Tymoczko, J. L. & Stryer, L. Biochemistry. (W. H. Freeman and Company, 2012). 9. General Western Blot Protocol.htm. 10. Western Blot Transfer.htm. 11. Academia Sinica - 1095.doc. 12. MagLab - Electrospray Ionization.htm. 13. Rader, H. & Schrepp, W. MALDI-TOF mass spectrometry in the analysis of synthetic polymers. Acta Polym. 49, 272–293 (1998). 14. Banerjee, S. & Mazumdar, S. Electrospray Ionization Mass Spectrometry: A Technique to Access the Information beyond the Molecular Weight of the Analyte. International Journal of Analytical Chemistry 2012, e282574 (2012). 15. Peterson, J. D., Nehrlich, S., Oyer, P. E. & Steiner, D. F. Determination of the Amino Acid Sequence of the Monkey, Sheep, and Dog Proinsulin C-Peptides by a Semi-micro Edman Degradation Procedure. J. Biol. Chem. 247, 4866–4871 (1972). 16. Perkins, D. N., Pappin, D. J., Creasy, D. M. & Cottrell, J. S. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20, 3551–3567 (1999). 17. Js, C. Protein identification by peptide mass fingerprinting. Pept Res 7, 115–124 (1993). 18. Jimenez, C. r., Huang, L., Qiu, Y. & Burlingame, A. l. in Current Protocols in Protein Science (John Wiley & Sons, Inc., 2001). at <http://onlinelibrary.wiley.com/doi/10.1002/0471140864.ps1604s14/abstract> 19. Krause, E., Wenschuh, H. & Jungblut, P. R. The Dominance of Arginine-Containing Peptides in MALDI-Derived Tryptic Mass Fingerprints of Proteins. Anal. Chem. 71, 4160–4165 (1999). 20. Broersen, K. et al. A standardized and biocompatible preparation of aggregate-free amyloid beta peptide for biophysical and biological studies of Alzheimer’s disease. Protein Eng. Des. Sel. 24, 743–750 (2011). 21. Stine, W. B., Dahlgren, K. N., Krafft, G. A. & LaDu, M. J. In vitro characterization of conditions for amyloid-beta peptide oligomerization and fibrillogenesis. J. Biol. Chem. 278, 11612–11622 (2003). 22. 高瞻自然科學教學資源平台. at <http://highscope.ch.ntu.edu.tw/wordpress/?p=1599> 23. Eanes, E. D. & Glenner, G. G. X-ray diffraction studies on amyloid filaments. J. Histochem. Cytochem. 16, 673–677 (1968). 24. Khurana, R. et al. Mechanism of thioflavin T binding to amyloid fibrils. J. Struct. Biol. 151, 229–238 (2005). 25. Biancalana, M., Makabe, K., Koide, A. & Koide, S. Molecular mechanism of thioflavin-T binding to the surface of beta-rich peptide self-assemblies. J. Mol. Biol. 385, 1052–1063 (2009). 26. Vassar, P. S. & Culling, C. F. Fluorescent stains, with special reference to amyloid and connective tissues. Arch Pathol 68, 487–498 (1959). 27. Biancalana, M. & Koide, S. Molecular mechanism of Thioflavin-T binding to amyloid fibrils. Biochim. Biophys. Acta 1804, 1405–1412 (2010). 28. Krebs, M. R. H., Bromley, E. H. C. & Donald, A. M. The binding of thioflavin-T to amyloid fibrils: localisation and implications. J. Struct. Biol. 149, 30–37 (2005). 29. Kumaraswamy, P., Sethuraman, S. & Krishnan, U. M. Hierarchical self-assembly of Tjernberg peptide at nanoscale. Soft Matter 9, 2684–2694 (2013). 30. Kayed, R. et al. Common structure of soluble amyloid oligomers implies common mechanism of pathogenesis. Science 300, 486–489 (2003). 31. Kayed, R. et al. Fibril specific, conformation dependent antibodies recognize a generic epitope common to amyloid fibrils and fibrillar oligomers that is absent in prefibrillar oligomers. Molecular Neurodegeneration 2, 18 (2007). 32. Yoshiike, Y. et al. Amyloid oligomer conformation in a group of natively folded proteins. PLoS ONE 3, e3235 (2008). 33. Tinoco, I. & Cantor, C. R. in Methods of Biochemical Analysis (Glick, D.) 81–203 (John Wiley & Sons, Inc., 1970). at <http://onlinelibrary.wiley.com/doi/10.1002/9780470110362.ch3/summary> 34. Berova, N., Nakanishi, K. & Woody, R. Circular Dichroism: Principles and Applications. (John Wiley & Sons, 2000). 35. Kirkwood, J. G. On the Theory of Optical Rotatory Power. The Journal of Chemical Physics 5, 479–491 (1937). 36. Woody, R. W. in Circular Dichroism and the Conformational Analysis of Biomolecules (Fasman, G. D.) 25–67 (Springer US, 1996). at <http://link.springer.com/chapter/10.1007/978-1-4757-2508-7_2> 37. Yang, J. T., Wu, C.-S. C. & Martinez, H. M. in Methods in Enzymology 130, 208–269 (Elsevier, 1986). 38. Simmons, L. K. et al. Secondary structure of amyloid beta peptide correlates with neurotoxic activity in vitro. Mol. Pharmacol. 45, 373–379 (1994). 39. Circular Dichroism.htm. 40. Lathe, G. H. & Ruthven, C. R. J. The separation of substances and estimation of their relative molecular sizes by the use of columns of starch in water. Biochem J 62, 665–674 (1956). 41. Andrews, P. Estimation of the molecular weights of proteins by Sephadex gel-filtration. Biochem J 91, 222–233 (1964). 42. Ritchie, C. Protein Purification. Materials and Methods 2, (2012). 43. Cole, J. L., Lary, J. W., Moody, T. & Laue, T. M. Analytical Ultracentrifugation: Sedimentation Velocity and Sedimentation Equilibrium. Methods Cell Biol 84, 143–179 (2008). 44. Hansen, J. C., Lebowitz, J. & Demeler, B. Analytical Ultracentrifugation of Complex Macromolecular Systems. Biochemistry 33, 13155–13163 (1994). 45. Greg Ralston. Introduction to ultracentrifugation.pdf. 46. UltraScan Analysis Software.html. 47. Laue, T. M. in Current Protocols in Protein Science (John Wiley & Sons, Inc., 2001). at <http://onlinelibrary.wiley.com/doi/10.1002/0471140864.ps0705s04/abstract> 48. Analytical Ultracentrifugation.html. 49. Houk, R. S. et al. Inductively coupled argon plasma as an ion source for mass spectrometric determination of trace elements. Anal. Chem. 52, 2283–2289 (1980). 50. ICP-MS Technique and Application.pdf. 51. Yang, F. et al. Curcumin inhibits formation of amyloid beta oligomers and fibrils, binds plaques, and reduces amyloid in vivo. J. Biol. Chem. 280, 5892–5901 (2005). 52. Solomonov, I. et al. Zn2+-Aβ40 complexes form metastable quasi-spherical oligomers that are cytotoxic to cultured hippocampal neurons. J. Biol. Chem. 287, 20555–20564 (2012). 53. Huang, L., Su, X. & Federoff, H. J. Single-chain fragment variable passive immunotherapies for neurodegenerative diseases. Int J Mol Sci 14, 19109–19127 (2013). 54. Nyborg, J. K. & Peersen, O. B. That zincing feeling: the effects of EDTA on the behaviour of zinc-binding transcriptional regulators. Biochem. J. 381, e3–4 (2004). 55. Raman, B. et al. Metal ion-dependent effects of clioquinol on the fibril growth of an amyloid {beta} peptide. J. Biol. Chem. 280, 16157–16162 (2005). 56. Zinc EDTA interaction.pdf. 57. Zn(II)-EDTA.htm. 58. Sunde, M. et al. Common core structure of amyloid fibrils by synchrotron X-ray diffraction. Journal of Molecular Biology 273, 729–739 (1997). 59. Eanes, E. D. & Glenner, G. G. X-Ray Diffraction Studies on Amyloid Filaments. J Histochem Cytochem 16, 673–677 (1968). 60. Wuthrich, K. The way to NMR structures of proteins. Nat Struct Mol Biol 8, 923–925 (2001). 61. Bolognesi, M. et al. Three-dimensional structure of the complex between pancreatic secretory trypsin inhibitor (Kazal type) and trypsinogen at 1.8 A resolution: Structure solution, crystallographic refinement and preliminary structural interpretation. Journal of Molecular Biology 162, 839–868 (1982). 62. Williamson, M. P., Havel, T. F. & Wuthrich, K. Solution conformation of proteinase inhibitor IIA from bull seminal plasma by 1H nuclear magnetic resonance and distance geometry. Journal of Molecular Biology 182, 295–315 (1985). 63. Zagorski, M. G. & Barrow, C. J. NMR studies of amyloid .beta.-peptides: proton assignments, secondary structure, and mechanism of an .alpha.-helix .fwdarw. .beta.-sheet conversion for a homologous, 28-residue, N-terminal fragment. Biochemistry 31, 5621–5631 (1992). 64. NMR basic at http://crrd.kmu.edu.tw/. 65. Bloembergen, N., Purcell, E. & Pound, R. Relaxation Effects in Nuclear Magnetic Resonance Absorption. Phys. Rev. 73, 679–712 (1948). 66. Andrew, E. R. Magic Angle Spinning in Solid State n.m.r. Spectroscopy. Phil. Trans. R. Soc. Lond. A 299, 505–520 (1981). 67. Yannoni, C. S. High-resolution NMR in solids: the CPMAS experiment. Acc. Chem. Res. 15, 201–208 (1982). 68. Hediger, S., Meier, B. H., Kurur, N. D., Bodenhausen, G. & Ernst, R. R. NMR cross polarization by adiabatic passage through the Hartmann—Hahn condition (APHH). Chemical Physics Letters 223, 283–288 (1994). 69. nmr. (14:07:48 UTC). at <http://www.slideshare.net/DanishKurien/nmr-9645019> 70. Takegoshi, K., Nakamura, S. & Terao, T. 13C–1H dipolar-driven 13C–13C recoupling without 13C rf irradiation in nuclear magnetic resonance of rotating solids. The Journal of Chemical Physics 118, 2325–2341 (2003). 71. DARR at http://kuchem.kyoto-u.ac.jp/bun/projects/DARR/darr_e.html. 72. NCOCX. at <http://www.protein-nmr.org.uk/solid-state-mas-nmr/spectrum-descriptions/ncocx/> 73. Hu, K.-N., Qiang, W. & Tycko, R. A general Monte Carlo/simulated annealing algorithm for resonance assignment in NMR of uniformly labeled biopolymers. J Biomol NMR 50, 267–276 (2011). 74. Tycko, R. & Hu, K.-N. A Monte Carlo/Simulated Annealing Algorithm for Sequential Resonance Assignment in Solid State NMR of Uniformly Labeled Proteins with Magic-Angle Spinning. J Magn Reson 205, 304–314 (2010). 75. Wishart, D. S. Interpreting protein chemical shift data. Progress in Nuclear Magnetic Resonance Spectroscopy 58, 62–87 (2011). CH3 1. Yoshiike, Y. et al. New insights on how metals disrupt amyloid beta-aggregation and their effects on amyloid-beta cytotoxicity. J. Biol. Chem. 276, 32293–32299 (2001). 2. Andrade, M. A., Chacon, P., Merelo, J. J. & Moran, F. Evaluation of secondary structure of proteins from UV circular dichroism spectra using an unsupervised learning neural network. Protein Eng. 6, 383–390 (1993). 3. Provencher, S. W. & Gloeckner, J. Estimation of globular protein secondary structure from circular dichroism. Biochemistry 20, 33–37 (1981). 4. Martins, I. C. et al. Lipids revert inert Aβ amyloid fibrils to neurotoxic protofibrils that affect learning in mice. The EMBO Journal 27, 224–233 (2008). 5. Freir, D. B. et al. Interaction between prion protein and toxic amyloid β assemblies can be therapeutically targeted at multiple sites. Nat Commun 2, 336 (2011). 6. Schuck, P. Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling. Biophys. J. 78, 1606–1619 (2000). 7. Sandberg, A. et al. Stabilization of neurotoxic Alzheimer amyloid-beta oligomers by protein engineering. Proc. Natl. Acad. Sci. U.S.A. 107, 15595–15600 (2010). 8. Huang, L., Su, X. & Federoff, H. J. Single-Chain Fragment Variable Passive Immunotherapies for Neurodegenerative Diseases. International Journal of Molecular Sciences 14, 19109–19127 (2013). 9. Raman, B. et al. Metal ion-dependent effects of clioquinol on the fibril growth of an amyloid {beta} peptide. J. Biol. Chem. 280, 16157–16162 (2005). 10. Solomonov, I. et al. Zn2+-Aβ40 Complexes Form Metastable Quasi-spherical Oligomers That Are Cytotoxic to Cultured Hippocampal Neurons. J. Biol. Chem. 287, 20555–20564 (2012). 11. Klug, G. M. J. A. et al. β-Amyloid protein oligomers induced by metal ions and acid pH are distinct from those generated by slow spontaneous ageing at neutral pH. European Journal of Biochemistry 270, 4282–4293 (2003). 12. Chimon, S. et al. Evidence of fibril-like β-sheet structures in a neurotoxic amyloid intermediate of Alzheimer’s β-amyloid. Nat Struct Mol Biol 14, 1157–1164 (2007). 13. Lu, J.-X. et al. Molecular structure of β-amyloid fibrils in Alzheimer’s disease brain tissue. Cell 154, 1257–1268 (2013). 14. Benilova, I., Karran, E. & De Strooper, B. The toxic Aβ oligomer and Alzheimer’s disease: an emperor in need of clothes. Nat. Neurosci. 15, 349–357 (2012). CH4 1. Chimon, S. et al. Evidence of fibril-like β-sheet structures in a neurotoxic amyloid intermediate of Alzheimer’s β-amyloid. Nat Struct Mol Biol 14, 1157–1164 (2007). 2. Lu, J.-X. et al. Molecular structure of β-amyloid fibrils in Alzheimer’s disease brain tissue. Cell 154, 1257–1268 (2013). 3. Syme, C. D. & Viles, J. H. Solution 1H NMR investigation of Zn2+ and Cd2+ binding to amyloid-beta peptide (Abeta) of Alzheimer’s disease. Biochim. Biophys. Acta 1764, 246–256 (2006). 4. Bertini, I. et al. Formation Kinetics and Structural Features of Beta-Amyloid Aggregates by Sedimented Solute NMR. ChemBioChem 14, 1891–1897 (2013). | |
| dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/55097 | - |
| dc.description.abstract | 錯誤摺疊的蛋白質堆積,以及在細胞質與神經細胞中的纖維纏結為阿茲海默症的主要特徵。此錯誤摺疊的蛋白主要由β-amyloid(Aβ)類澱粉樣蛋白組成,其中尤以Aβ1-40與Aβ1-42為主。過去由於在神經退化性疾病中發現大量纖維沉澱,因此長久以來認為纖維是影響阿茲海默症的主要因素。然而現今已有許多證據提出可溶性的寡聚物才是造成細胞毒性,引起細胞死亡的元兇。在腦中的許多輔助因子也漸漸受到大家的重視,在腦中濃度異常高的金屬,如Zn2+, Cu2+及Fe3+,都被發現在斑塊中與Aβ有交互作用,其中鋅離子被發現有促進聚集的形成,與穩定寡聚物形貌的能力。因此我們嘗試用鋅離子在特定條件控制下得到穩定的寡聚物,以進行結構研究,藉以了解聚集因素。
在本實驗中,我們利用濃度比例為1:1的鋅離子與Aβ1-40,在25 °C靜置條件下,培養出圓球狀,直徑平均為12−25 nm,可被A11抗體辨識的寡聚物。此Zn2+-Aβ1-40寡聚物由35−50個Aβ1-40聚集而成,其聚集速度快,二級結構之β特徵較一般Aβ1-40低,但穩定性高,形貌與β特徵均可維持1週以上。我們利用EDTA的實驗得知此寡聚物在移除了鋅離子後仍為on-pathway的中間物。此外,Zn2+對成熟纖維的堆疊也會產生影響。藉由固態核磁共振技術,我們發現Zn2+-Aβ1-40與Tycko及Ishii教授團隊得到的纖維與中間體結構均不相同。我們也從訊號的半高寬發現,本實驗中的金屬螯合寡聚物可能不具同質(homogeneous)的結構,因此導致圖譜解析度不佳。至於Zn2+-Aβ1-40的分子結構還有待進一步研究。 | zh_TW |
| dc.description.abstract | Alzheimer’s disease (AD) is characterized by the accumulation of amyloid plaques and neurofibrillary tangles in the brain. The senile plaques consist mainly of β-amyloid (Aβ) peptide with 40 or 42 residues, which may induce progressive neurodegeneration. It has long been reasoned that Aβ fibrils in extracellular plaques is an underlying trigger of neurodegeneration in AD. However, emerging evidences support that prefibrillar soluble oligomers may play a key role in neuronal toxicity inducing synaptic dysfunction in AD patients. Abnormally high concentration of metal ions such as Zn2+, Cu2+, and Fe3+ have been found in senile plaques and these ions would interact with Aβ. It has been found in vitro that Zn2+ ion promotes and stabilizes the oligomerization of Aβ.
In this study, we stabilize the oligomeric aggregates of 13C- and 15N-labeled Aβ1-40 by adding equivalent amounts of Zn2+ ions. The peptides form spherical aggregates with diameter of 12−25 nm as indicated by Transmission electron microscope images. Together with the circular dichroism and Thioflavin T fluorescence data we find these oligomers have the beta-strand conformation. Using analytical ultracentrifugation (AUC) and size exclution chromatography (SEC) methods, we found these oligomers were composed of by 35−50 mer of Aβ1-40. We further investigate the evolution of Zn2+ chelated Aβ1-40 oligomer by adding EDTA to remove Zn2+ ions. We found that the Aβ1-40 oligomers will fibrillize after the removal of Zn2+ ions. These Zn2+-Aβ1-40 oligomers are on-pathway oligomers. According to our solid-state NMR results, our oligomer structure are different from the results reported by Tycko on fibrils and by Ishii on intermediates. However, we also found that the poor resolution of NMR data may be due to the inhomogeneous of the structure of Zn2+-Aβ1-40 oligomers. Further investigations are needed to solve the molecular structure of the oligomers. | en |
| dc.description.provenance | Made available in DSpace on 2021-06-16T03:47:07Z (GMT). No. of bitstreams: 1 ntu-104-R01223124-1.pdf: 8602173 bytes, checksum: 7c60fb39304f431c1388d8cb2be3687a (MD5) Previous issue date: 2015 | en |
| dc.description.tableofcontents | 第一章 序論……………………………………………………………1
1-1 類澱粉樣蛋白纖維…………………………………………………………….1 1-1-1 類澱粉樣蛋白特性…………………………………………………….1 1-1-2 蛋白摺疊與類澱粉樣蛋白之形成機制……………………………….3 1-1-3 類澱粉樣纖維與多肽鏈聚集的不同樣貌…………………………….4 1-2 Aβ胜肽與阿茲海默症………………………………………………………...7 1-3 Aβ寡聚物……………………………………………………………………..10 1-3-1 寡聚物的特性………………………………………………………….10 1-3-2 Aβ寡聚物的種類……………………………………………………….12 1-4 環境中分子影響Aβ聚集與穩定……………………………………………..15 1-4-1 與Aβ作用的環境分子………………………………………………...15 1-4-2金屬離子與Aβ胜肽的交互作用………………………………………16 1-5 固態核磁共振光譜應用於Aβ結構探討……………………………………..20 1-5-1 Aβ纖維之結構探討……………………………………………………..20 1-5-2 Aβ聚集體與金屬離子螯合Aβ之結構探討…………………………...22 1-6 研究動機……………………………………………………………………….26 1-7 參考文獻……………………………………………………………………….27 第二章 合成與鑑定……………………………………………………34 2-1 材料與使用儀器………………………………………………………………..34 2-1-1 化學藥品…………………………………………………………………34 2-1-2 實驗儀器…………………………………………………………………36 2-2 胜肽製備………………………………………………………………………..38 2-2-1 蛋白表達製備Aβ1-40胜肽………………………………………………38 2-2-2 胜肽純化…………………………………………………………………43 2-2-3 胜肽鑑定…………………………………………………………………46 2-3 鋅離子螯合之Aβ1-40寡聚物製備……………………………………………...53 2-4 鋅離子螯合之Aβ1-40寡聚物鑑定…………………………………………..54 2-4-1 寡聚物形貌………………………………………………………………54 2-4-2 寡聚物特徵………………………………………………………………55 2-4-3 寡聚物二級結構…………………………………………………………58 2-4-4 寡聚物大小………………………………………………………………60 2-4-5 胜肽與鋅離子結合比例…………………………………………………64 2-5 鋅離子螯合之Aβ1-40寡聚物演化……………………………………………...65 2-5-1 加入鋅離子對成熟纖維的影響…………………………………………65 2-5-2 去除鋅離子對鋅螯合之寡聚物的影響…………………………………66 2-6 鋅離子螯合之Aβ1-40寡聚物結構鑑定………………………………………...67 2-6-1 核磁共振基本原理………………………………………………………67 2-6-2 固態核磁共振技術………………………………………………………69 2-7 參考文獻………………………………………………………………………..73 第三章 實驗結果與討論………………………………………………77 3-1 蛋白表達製備胜肽及其純化與鑑定…………………………………………..77 3-1-1 Aβ1-40蛋白表達…………………………………………………………...77 3-1-2 Aβ1-40蛋白表達之優化…………………………………………………...78 3-1-3 Aβ1-40胜肽純化與鑑定…………………………………………………...80 3-2 鋅離子螯合之Aβ1-40寡聚物之鑑定…………………………………………...88 3-2-1 鋅離子螯合寡聚物特徵…………………………………………………88 3-2-2 鋅離子螯合寡聚物二級結構……………………………………………91 3-2-3 鋅離子螯合寡聚物大小…………………………………………………93 3-2-4 胜肽與鋅離子結合比例…………………………………………………97 3-3 鋅離子螯合之Aβ1-40寡聚物之演化…………………………………………...98 3-3-1 加入鋅離子對成熟纖維的影響…………………………………………98 3-3-2 去除鋅離子對鋅螯合之寡聚物的影響………………………………..100 3-4 Aβ1-40寡聚物分子結構之鑑定-固態核磁共振光譜…………………………..104 3-5參考文獻…………………………..……………………………………………110 第四章 總結與未來展望 ……………………………………………111 4-1 論文總結……………………..………………………………………………...111 4-2 未來展望……………………………………………………………………….112 4-3 參考文獻……………………………………………………………………….112 | |
| dc.language.iso | zh-TW | |
| dc.subject | 澱粉樣蛋白 | zh_TW |
| dc.subject | 寡聚物 | zh_TW |
| dc.subject | 鋅離子 | zh_TW |
| dc.subject | Zn | en |
| dc.subject | Abeta | en |
| dc.subject | oligomer | en |
| dc.title | 以鋅離子螯合之類澱粉樣多肽分子寡聚物之結構探討 | zh_TW |
| dc.title | Structural Elucidation of Zn2+ Ions Chelated
Oligomeric Aggregates of Amyloid-Beta Peptides | en |
| dc.type | Thesis | |
| dc.date.schoolyear | 103-1 | |
| dc.description.degree | 碩士 | |
| dc.contributor.oralexamcommittee | 陳韻如,黃人則,戴桓青 | |
| dc.subject.keyword | 澱粉樣蛋白,鋅離子,寡聚物, | zh_TW |
| dc.subject.keyword | Zn,Abeta,oligomer, | en |
| dc.relation.page | 113 | |
| dc.rights.note | 有償授權 | |
| dc.date.accepted | 2015-01-30 | |
| dc.contributor.author-college | 理學院 | zh_TW |
| dc.contributor.author-dept | 化學研究所 | zh_TW |
| 顯示於系所單位: | 化學系 | |
文件中的檔案:
| 檔案 | 大小 | 格式 | |
|---|---|---|---|
| ntu-104-1.pdf 未授權公開取用 | 8.4 MB | Adobe PDF |
系統中的文件,除了特別指名其著作權條款之外,均受到著作權保護,並且保留所有的權利。
