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完整後設資料紀錄
DC 欄位 | 值 | 語言 |
---|---|---|
dc.contributor.advisor | 余榮熾 | |
dc.contributor.author | Jia-Ching Liao | en |
dc.contributor.author | 廖家慶 | zh_TW |
dc.date.accessioned | 2021-06-16T02:40:47Z | - |
dc.date.available | 2020-07-29 | |
dc.date.copyright | 2015-07-29 | |
dc.date.issued | 2015 | |
dc.date.submitted | 2015-07-22 | |
dc.identifier.citation | 1. Daniels G. Human blood groups. 3rd ed. Wiley-Blackwell, 2013. p. 1-2.
2. Landsteiner K, Levine P. Further observations on individual differences of human blood. Proc Soc Exp Biol Med, 1927. 24: p.941-2. 3. Sanger R. An association between the P and Jay systems of blood groups. Nature, 1955. 176: p.1163-4. 4. Matson G, Swanson J, Novades J, et al. A “new” antigen and antibody belonging to the P blood group system. Am J Hum Genet, 1959. 11: p.26-34. 5. Daniels G. Human blood groups. 3rd ed. Wiley-Blackwell, 2013. p. 162-164. 6. Naiki M, Fong J, Ledeen R, et al. Structure of the human erythrocyte blood group P1 glycosphingolipid. Biochemistry, 1975. 14: p.4831-7. 7. Naiki M, Marcus DM. Human erythrocyte P and Pk blood group antigens: identification as glycosphingolipids. Biochem Biophys Res Commun, 1974. 60: p.1105-11. 8. Kojima Y, Fukumoto S, Furukawa K, et al. Molecular cloning of globotriaosylceramide/CD77 synthase, a glycosyltransferase that initiates the synthesis of globo series glycosphingolipids. J Biol Chem, 2000. 275: p.15152-6. 9. Steffensen R, Carlier K, Wiels J, et al. Cloning and expression of the histo-blood group Pk UDP-galactose: Galβ1- 4Glcβ1-Cer α1,4-galactosyltransferase. J Biol Chem, 2000. 275: p.16723-9. 10. Keusch JJ, Manzella SM, Nyame KA, et al. Cloning of Gb3 synthase, the key enzyme in globo-series glycosphingolipid synthesis, predicts a family of α1,4-glycosyltransferases conserved in plants, insects, and mammals. J Biol Chem, 2000. 275: p.25315-21. 11. Iwamura K, Furukawa K, Uchikawa M, et al. The blood group P1 synthase gene is identical to the Gb3/CD77 synthase gene. J Biol Chem, 2003. 278: p.44429-38. 12. Daniels G. Human blood groups. 3rd ed. Wiley-Blackwell, 2013. p. 165-168. 13. Helmuth L. Genome research: map of the human genome 3.0. Science, 2001. 293: p.583-585. 14. Hellberg Å, Chester MA, Olsson ML. Two previously proposed P1/P2-differentiating and nine novel polymorphisms at the A4GALT (Pk) locus do not correlate with the presence of the P1 blood group antigen. BMC Genet, 2005. 6: p.49. 15. Tilley L, Green C, Daniels G. Sequence variation in the 5’ untranslated region of the human A4GALT gene is associated with, but does not define, the P1 blood-group polymorphism. Vox Sang, 2006. 90: p.198-203. 16. Thuresson B, Westman JS, Olsson ML. Identification of a novel A4GALT exon reveals the genetic basis of the P1/P2 histo-blood groups. Blood, 2011. 117: p.678-87. 17. Lai Y.J., et al. A systematic study of single-nucleotide polymorphisms in the A4GALT gene suggests a molecular genetic basis for the P1/P2 blood groups. Transfusion, 2014. 54(12): p.3222-31. 18. Andersson LC, Jokinen M, Gahmberg CG. Induction of erythroid differentiation in the human leukemia cell line K562. Nature, 1979. 278: p.364-5. 19. Witt O, Sand K, Pekrun A. Butyrate-induced erythroid differentiation of human K562 leukemia cells involves inhibition of ERK and activation of p38 MAP kinase pathways. Blood, 2000. 95: p.2391-6. 20. Sutherland JA, Turner AR, Mannoni P, McGann LE, Turc JM. Differentiation of K562 leukemia cells along erythroid, macrophage, and megakaryocyte lineages. J Biol Response Mod, 1986. 5(3): p.250-62. 21. Fletcher KS, Bremer EG, Schwarting GA. P blood group regulation of glycosphingolipid levels in human erythrocytes. J Biol Chem, 1979. 254: p.11196-8. 22. Lo HS, Wang Z, Hu Y, et al. Allelic variation in gene expression is common in the human genome. Genome Res, 2003. 13(8): p.1855-62. 23. Serre D, Gurd S, Ge B, Sladek R, et al. Differential allelic expression in the human genome: a robust approach to identify genetic and epigenetic cis-acting mechanisms regulating gene expression. PLoS Genet, 2008. 4(2): p.e1000006. 24. Yan H, Yuan W, Velculescu VE, Vogelstein B, Kinzler KW. Allelic variation in human gene expression. Science, 2002. 297(5584): p.1143. 25. Morley M, Molony CM, Weber TM, Devlin JL, et al. Genetic analysis of genome-wide variation in human gene expression. Nature, 2004. 430(7001): p.743-7. 26. Hinds DA, Stuve LL, Nilsen GB, Halperin E, et al. Whole-genome patterns of common DNA variation in three human populations. Science, 2005. 307(5712): p.1072-9. 27. Kerkel K, Spadola A, Yuan E, et al. Genomic surveys by methylation-sensitive SNP analysis identify sequence dependent allele-specific DNA methylation. Nat Genet, 2008. 40: p.904-8. 28. Schalkwyk LC, Meaburn EL, Smith R, et al. Allelic skewing of DNA methylation is widespread across the genome. Am J Hum Genet, 2010. 86: p.196-212. 29. Tycko B. Allele-specific DNA methylation: beyond imprinting. Hum Mol Genet, 2010. 19: R210-20. 30. Neph S, Vierstra J, Stergachis AB, et al. An expansive human regulatory lexicon encoded in transcription factor footprints. Nature, 2012. 489: p.83-90. | |
dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/54119 | - |
dc.description.abstract | P1及Pk是兩種表現於細胞表面的醣抗原,此兩者醣抗原在細胞表現的變化已知和多種疾病有所相關。過去的研究已知,紅血球表面P1及Pk抗原的表現量因個人而不同,然而其分子遺傳機制尚未完全明瞭。α-1,4-Galactosyltransferase (α4Gal-T)為一種半乳糖基轉移酶,具有可合成P1抗原以及Pk抗原之酵素活性。在過去的研究指出,個體紅血球表現P1抗原之多及寡(又稱為P1及P2血型)由A4GALT之基因表現量高低所決定,其中P2表型的紅血球,其A4GALT的mRNA表現量和血球表面的P1抗原數量,皆會少於P1表型的紅血球。於是找出造成A4GALT基因表現量改變的因素,便能有助於釐清形成P1/P2表型之分子機制。
單核苷酸多型性(single nucleotide polymorphism,簡稱SNP)指的是由單個或少數核苷酸的改變所引起的DNA序列的改變,所造成物種間染色體基因組之多樣性。在我們研究室先前的研究中已經分別分析P1及P2表型個體之A4GALT基因的SNPs,發現其中的SNP rs2143918 (SNP5)及SNP rs5751348 (SNP6)對於A4GALT基因表現量的高低與P1/P2表型的形成有很大的關聯性。我們因此進而使用電腦預測可能與此二個SNP結合親和力呈現差異的轉錄因子,得到ETS2、AML1、EGR3、CACCC-binding factor (KLFs)、CEBPD等轉錄因子的預測。接著我們利用K-562細胞模型以及報導基因分析法(Reporter assay)去做進一步的檢驗,發現在K-562細胞中,只有EGR3可促進A4GALT的基因表現,同時刺激帶A4GALT SNP6高表現基因型(P1 allele)的報導基因載體的轉錄活性。這些結果顯示,EGR3轉錄因子可能扮演刺激不同A4GALT SNP6基因型對偶基因的角色。後續的實驗我們想進一步去證實EGR3在A4GALT SNP6 P1/P2異合子型的細胞株中,對於A4GALT不同基因型的表現是否有影響,以更進一步證實EGR3轉錄因子扮演差異性調控帶有不同SNP6基因型的A4GALT基因的表現,因此而造成P1及P2血型之不同。 | zh_TW |
dc.description.abstract | P1 and Pk are two different carbohydrate antigens present on cell surfaces. The expressions of the P1 and Pk antigen on red blood cells (RBCs) are different among individuals; however, the molecular genetic mechanism leading to this difference is still unclear. The formations of the P1 and Pk antigens are determined by the activity of an α-1,4-galactosyltransferase, encoded from the A4GALT gene. According to previous studies, the common phenotypic polymorphisms of the P1+ and P1– phenotypes on RBCs, which are designated as the P1 and P2 blood groups, respectively, depend on the different A4GALT gene expression levels among individuals. In RBCs with the P2 phenotype, the expression level of A4GALT mRNA and the amount of the P1 antigen are both lower than the RBCs with the P1 phenotype.
In our previous investigation, we have demonstrated two single-nucleotide polymorphisms (SNPs), rs2143918 (SNP5) and rs5751348 (SNP6), located in the intron 1 region of the A4GALT gene, are associated with the P1/P2 phenotypes. In the present study, we aim to demonstrate the factor leading to the different expression levels between the A4GALT genes with the P1 and P2 genotypes. Several transcription factors, including ETS2, AML1, EGR3, KLF, and CEBPD, were predicted in silico to have differential binding affinity to the SNP5 or SNP6 regions with the different P1 and P2 genotypes. In further investigations using reporter assay and K-562 erythryoleukemia cells as a study model, we found that ectopic expression of the EGR3 transcription factor leads to a significant induction of the transcriptional activity in the reporter construct with the A4GALT SNP6-P1 genotype and also promote the expression of the A4GALT gene in K-562 cells. These results highly suggested that EGR3 may play an important role in activating the expression of the A4GALT gene with the P1 genotype at the SNP6 position. In our further investigation, we plan to demonstrate whether EGR3 will differentially stimulate the expression the A4GALT genes with the P1 and P2 genotypes in a P1/P2 heterozygous cell line to substantiate the functional role of EGR3 transcription factor in the formation of the P1/P2 blood groups. | en |
dc.description.provenance | Made available in DSpace on 2021-06-16T02:40:47Z (GMT). No. of bitstreams: 1 ntu-104-R02b46021-1.pdf: 2030501 bytes, checksum: a998ffb0a3dc5b92996c7e179196cf08 (MD5) Previous issue date: 2015 | en |
dc.description.tableofcontents | 口試委員會審定書 i
謝辭 ii 摘要 iii 英文摘要 v 縮寫表 vii 目錄 ix 圖目錄 xii 第一章 緒論 1 1.1 人類P血型系統 1 1.2 α-1,4-Galactosyltransferase (α4Gal-T) 2 1.3 A4GALT基因SNP與P1/P2血型之關聯 2 1.3.1 單核苷酸多型性 (Single nucleotide polymorphism, SNP) 2 1.3.2 A4GALT基因SNP5/6與P1/P2血型 3 1.4 研究構想與目的 3 第二章 實驗材料與方法 5 2.1 細胞培養與分化 5 2.2 報導基因分析法(Reporter assay) 5 2.3 RNA表現之分析 7 2.3.1 RNA萃取 7 2.3.2 反轉錄聚合酶連鎖反應 (Reverse Transcription-Polymerase Chain Reaction) 7 2.3.3 即時定量聚合酶連鎖反應 (Real-Time Polymerase Chain Reaction) 7 2.4 基因轉殖 7 2.4.1 脂質體轉染法 (Liposome Transfection) 7 2.4.2 電穿孔法 (Electroporation) 8 2.5 蛋白質表現之分析 8 2.5.1 蛋白質萃取 8 2.5.2 SDS聚丙烯醯胺凝膠電泳(SDS-Polyacrylamide gel electrophoresis, SDS-PAGE) 8 2.5.3 西方墨點法(Western blotting) 8 2.6 電泳遷移率變動分析 (Electrophoretic Mobility Shift Assay, EMSA) 9 2.6.1 核蛋白質萃取 9 2.6.2 電泳與轉印 9 2.6.3 偵測 9 第三章 結果 10 3.1 轉錄因子對A4GALT基因不同SNP基因型的轉錄活性調控關係 10 3.1.1 利用電腦預測何種轉錄因子可能會因A4GALT基因SNP5和SNP6基因型不同而導致其和基因結合時產生親和性差別 10 3.1.2 分析可能具有結合能力差異之轉錄因子對A4GALT基因SNP5和SNP6的P1及P2基因型之轉錄活性影響 11 3.1.3 分析KLF1與EGR3對A4GALT基因SNP5及SNP6不同基因型之轉錄活性影響 12 3.2 轉錄因子EGR3與KLF1對A4GALT基因表現之影響 12 3.3 EGR3與A4GALT基因SNP6兩者之間的關係 13 3.3.1 EGR3與A4GALT基因SNP6之間的蛋白質與DNA交互作用(interaction) 14 3.3.2 EGR3在A4GALT基因SNP6異型合子細胞中對A4GALT基因表現的影響 14 第四章 討論 16 第五章 圖表 19 參考文獻 30 附錄 33 | |
dc.language.iso | zh-TW | |
dc.title | A4GALT基因SNP與紅血球P1抗原表現之分子機制 | zh_TW |
dc.title | A4GALT gene single-nucleotide polymorphisms and the expression of P1 antigen on red blood cells | en |
dc.type | Thesis | |
dc.date.schoolyear | 103-2 | |
dc.description.degree | 碩士 | |
dc.contributor.oralexamcommittee | 朱善德,張茂山,涂玉青 | |
dc.subject.keyword | P1/P2血型,α-1,4-半乳糖基轉移?,單一核?酸多型性, | zh_TW |
dc.subject.keyword | P1/P2 blood groups,A4GALT,Single-nucleotide polymorphism (SNP), | en |
dc.relation.page | 38 | |
dc.rights.note | 有償授權 | |
dc.date.accepted | 2015-07-22 | |
dc.contributor.author-college | 生命科學院 | zh_TW |
dc.contributor.author-dept | 生化科學研究所 | zh_TW |
顯示於系所單位: | 生化科學研究所 |
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