請用此 Handle URI 來引用此文件:
http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/52329
完整後設資料紀錄
DC 欄位 | 值 | 語言 |
---|---|---|
dc.contributor.advisor | 丘臺生(Tai-Sheng Chiu) | |
dc.contributor.author | Li Lin | en |
dc.contributor.author | 林立 | zh_TW |
dc.date.accessioned | 2021-06-15T16:12:01Z | - |
dc.date.available | 2017-08-21 | |
dc.date.copyright | 2015-08-21 | |
dc.date.issued | 2015 | |
dc.date.submitted | 2015-08-18 | |
dc.identifier.citation | Aripin, I., and P. Showers. 2000. Population parameters of small pelagic fishes caught off Tawi-Tawi, Philippines. Naga, the ICLARM Quarterly 23: 21-26.
Bakun, A. 2014. Active opportunist species as potential diagnostic markers for comparative tracking of complex marine ecosystem responses to global trends. ICES Journal of Marine Science: Journal du Conseil. Bandelt, H. J., P. Forster, and A. Röhl. 1999. Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution 16: 37-48. Borrell, Y. J., J. A. Pinera, J. A. Sanchez Prado, and G. Blanco. 2012. Mitochondrial DNA and microsatellite genetic differentiation in the European anchovy Engraulis encrasicolus L. ICES Journal of Marine Science 69: 1357-1371. Bouchenak-Khelladi, Y., J.-D. Durand, A. Magoulas, and P. Borsa. 2008. Geographic structure of European anchovy : A nuclear-DNA study. Journal of Sea Research 59: 269-278. Chen, C.-S., and T.-S. Chiu. 2003. Early life history traits of Japanese anchovy in the northeastern waters of Taiwan, with reference to larval transport. Zoological Studies Taipei 42: 248-257. Chen, C.-S., C.-H. Tzeng, and T.-S. Chiu. 2010. Morphological and molecular analyses reveal separations among spatiotemporal populations of anchovy (Engraulis japonicus) in the southern East China Sea. Zoological Studies 49: 270-282. Chiou, W.-D., C.-Y. Chen, C.-M. Wang, and C.-T. Chen. 2006. Food and feeding habits of ribbonfish Trichiurus lepturus in coastal waters of south-western Taiwan. Fish Sci 72: 373-381. Chiu, T.-S., C.-L. Chen, and S.-S. Young. 1999. Age and growth of two co-occurred anchovy species (Encrasicholina puntifer and E. heteroloba) during autumn larval anchovy fishing season in I-Ian Bay, NE Taiwan. Journal of the Fisheries Society of Taiwan 26: 183-190. Chiu, T.-S., S.-S. Young, and C.-S. Chen. 1997. Monthly variation of larval anchovy fishery in I-lan Bay, NE Taiwan, with an evaluation for optimal fishing season. Journal of Fisheries Society at Taiwan 24: 273-282. Chou, R.-L., M.-S. Su, and H.-Y. Chen. 2001. Optimal dietary protein and lipid levels for juvenile cobia (Rachycentron canadum). Aquaculture 193: 81-89. Darriba, D., G. L. Taboada, R. Doallo, and D. Posada. 2012. jModelTest 2 : more models, new heuristics and parallel computing. Nat Meth 9: 772-772. Delsman, H. C. 1972. Fish Eggs and Larvae from the Java Sea. Linnaeus Press. Excoffier, L., and H. E. L. Lischer. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources 10: 564-567. Excoffier, L., P. E. Smouse, and J. M. Quattro. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491. Falcini, F. et al. 2015. The role of hydrodynamic processes on anchovy eggs and larvae distribution in the Sicily channel (Mediterranean Sea): A case study for the 2004 data set. PLoS ONE 10: e0123213. Fu, Y. X. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147: 915-925. Giannoulaki, M. et al. 2013. Characterizing the potential habitat of European anchovy Engraulis encrasicolus in the Mediterranean Sea, at different life stages. Fisheries Oceanography 22: 69-89. Grant, W., and B. Bowen. 1998. Shallow population histories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation. Journal of Heredity 89: 415-426. Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program. In: Nucleic acids symposium series. p 95-98. Harpending, H. C. 1994. Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Human Biology 66: 591-600. Hartl, D. L., A. G. Clark, and A. G. Clark. 1997. Principles of population genetics. Sinauer associates Sunderland. Hata, H., and H. Motomura. 2015. A new species of anchovy, Encrasicholina macrocephala (Clupeiformes: Engraulidae), from the northwestern Indian Ocean. Zootaxa 3941: 117-124. Henriques, R., W. M. Potts, C. V. Santos, W. H. H. Sauer, and P. W. Shaw. 2014. Population connectivity and phylogeography of a coastal fish (Sciaenidae), across the benguela current region : Evidence of an ancient vicariant event. PLoS ONE 9: e87907. Hsieh, C.-H. et al. 2009. Time series analyses reveal transient relationships between abundance of larval anchovy and environmental variables in the coastal waters southwest of Taiwan. Fisheries Oceanography 18: 102-117. Hu, J., H. Kawamura, H. Hong, and Y. Qi. 2000. A review on the currents in the South China Sea: seasonal circulation, South China Sea warm current and Kuroshio intrusion. J Oceanogr 56: 607-624. Huang, C.-H. 2008. Daily Growth Pattern of Encrasicholina punctifer from Larval to Juvenile Stage in the Waters Southwest off Taiwan, National Taiwan University. Iversen, S. A., D. Zhu, A. Johannessen, and R. Toresen. 1993. Stock size, distribution and biology of anchovy in the Yellow Sea and East China Sea. Fisheries Research 16: 147-163. Jackson, A. M. et al. 2014. Population structure and phylogeography in Nassau grouper, a mass-aggregating marine fish. PLoS ONE 9: e97508. Jan, S., D. D. Sheu, and H. M. Kuo. 2006. Water mass and throughflow transport variability in the Taiwan Strait. Journal of Geophysical Research: Oceans (1978–2012) 111. Jan, S., J. Wang, C.-S. Chern, and S.-Y. Chao. 2002. Seasonal variation of the circulation in the Taiwan Strait. Journal of Marine Systems 35: 249-268. Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16: 111-120. Kristoffersen, J. B., and A. Magoulas. 2008. Population structure of anchovy Engraulis encrasicolus L. in the Mediterranean Sea inferred from multiple methods. Fisheries research 91: 187-195. Lamichhaney, S. et al. 2012. Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring. Proceedings of the National Academy of Sciences of the United States of America 109: 19345-19350. Lavoué, S., M. Miya, and M. Nishida. 2010. Mitochondrial phylogenomics of anchovies (family Engraulidae) and recurrent origins of pronounced miniaturization in the order Clupeiformes. Molecular Phylogenetics and Evolution 56: 480-485. Librado, P., and J. Rozas. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452. Maack, G., and M. R. George. 1999. Contributions to the reproductive biology of encrasicholina punctifer Fowler, 1938 (engraulidae) from West Sumatra, Indonesia. Fisheries Research 44: 113-120. Marks, J. 1988. Molecular evolutionary genetics. American Journal of Physical Anthropology 75: 428-429. Morzaria-Luna, H. N., P. Turk-Boyer, and M. Moreno-Baez. 2014. Social indicators of vulnerability for fishing communities in the Northern Gulf of California, Mexico: Implications for climate change. Marine Policy 45: 182-193. Pennello, G. A. 2007. Duncan's k -ratio bayes rule approach to multiple comparisons : An Overview. Biometrical Journal 49: 78-93. Perea, S., and I. Doadrio. 2015. Phylogeography, historical demography and habitat suitability modelling of freshwater fishes inhabiting seasonally fluctuating Mediterranean river systems: a case study using the Iberian cyprinid Squalius valentinus. Molecular Ecology: n/a-n/a. Silva, G., F. P. Lima, P. Martel, and R. Castilho. 2014. Thermal adaptation and clinal mitochondrial DNA variation of European anchovy. Song, N., X. M. Zhang, X. F. Sun, T. Yanagimoto, and T. X. Gao. 2010. Population genetic structure and larval dispersal potential of spottedtail goby Synechogobius ommaturus in the north-west Pacific. Journal of Fish Biology 77: 388-402. Taillebois, L., M. Castelin, J. R. Ovenden, C. Bonillo, and P. Keith. 2013. Contrasting genetic structure among populations of two amphidromous fish species (Sicydiinae) in the central west pacific. PLoS ONE 8: e75465. Tajima, F. 1989. The effect of change in population size on DNA polymorphism. Genetics 123: 597-601. Tamura, K., and M. Nei. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 10: 512-526. Tsai, C.-F. et al. 1998. Fluctuation in abundance of larval anchovy and environmental conditions in coastal waters off south-western Taiwan as associated with the El Niño–Southern Oscillation. Fisheries Oceanography 6: 238-249. Tu, C.-Y. 2010. Using coupled fish behavior-hydrodynamic model to investigate spawning migration of Japanese anchovy, Engraulis japonicus, from the East China Sea to Taiwan, National Taiwan University. Turner, T. F., J. P. Wares, and J. R. Gold. 2002. Genetic effective size is three orders of magnitude smaller than adult census size in an abundant, Estuarine-dependent marine fish (Sciaenops ocellatus). Genetics 162: 1329-1339. Wallace, C., J. Pandolfi, A. Young, and J. Wolstenholme. 1991. Indo-Pacific coral biogeography : A case study from the Acropora selago group. Australian Systematic Botany 4: 199-210. Waller, R. A., and D. B. Duncan. 1969. A bayes rule for the symmetric multiple comparisons problems. Journal of the American Statistical Association 64: 1484-1503. Watterson, G. A. 1975. On the number of segregating sites in genetical models without recombination. Theoretical Population Biology 7: 256-276. Wongratana, T., T. Munroe, and M. Nizinski. 1999. Order of Clupeiformes Engraulidae. The Living Marine Resources of the Western Central Pacific: Batoid fishes, chimaera and bony fishes part 1 (Elopidae to Linophrynidae) 3: 1698. Yang, Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. Journal of Molecular evolution 39: 306-314. Yasue, N., and A. Takasuka. 2009. Seasonal variability in growth of larval Japanese anchovy Engraulis japonicus driven by fluctuations in sea temperature in the Kii Channel, Japan. Journal of Fish Biology 74: 2250-2268. Young, E. F. et al. 2015. Oceanography and life history predict contrasting genetic population structure in two Antarctic fish species. Evolutionary Applications 8: 486-509. Young, S.-S., T.-S. Chiu, and S.-C. Shen. 1994a. A revision of the family Engraulidae (Pisces) from Taiwan. Zoological Studies 33: 217-227. Young, S.-S., T.-S. Chiu, and S.-C. Shen. 1994b. A revision of the family Engraulidae (Pisces) from Taiwan. Zool. Stud 33: 217-227. Yu, P., and T. Chiu. 1994. Fishery target species of larval anchovy fishery in the western central Taiwan. Journal of Fisheries Society at Taiwan 21: 227-239. | |
dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/52329 | - |
dc.description.abstract | 魩鱙漁業為臺灣周邊水域重要小型漁業,其捕獲物種主要由日本鯷、異葉公鯷與刺公鯷三種鯷科仔稚魚所組成。由2002年到2012年的豐度組成得知此兩種仔稚魚豐度存在年間及季節間變異。藉由漁獲組成之時間別及海域別間差異分析,可推測異葉公鯷與刺公鯷乘著台灣南面洋流添入沿岸漁場,且此兩種魚洄游至產卵場時間及深度相當;然而是否源自南方單一系群或多個系群仍有待釐清。本研究主旨為分別探討此二物種之仔稚魚如何匯入臺灣海域,以完成其生活史之成育階段,並且定義其單位系群。究明其南方來源有助漁業管理之實務及理想性,可達成沿岸魩鱙魚獲資源永續利用之目標。
本分析所需樣本得自2010至2013,空間區分為三個分立成育場,分別為臺灣東北、西北及西南海區。年別樣本將反應添入年級群強度,並分為春季與秋季兩個季節群。族群性狀特徵以外形與分子差異分別定量。外形區分由族群多變數形態分析檢定,而分子差異由粒線體中胞色素b為族群標記,由完整三因子變方分析結果顯示系群關係。 統計分析於外形性狀判別中,異葉公鯷樣本呈現春秋兩季節獨立分群,此結果於基因序列分析再次被驗證,可得知異葉公鯷仔稚魚源自兩個獨立母魚群體,並且於不同季節時各自匯入沿岸漁場;統計結果顯示刺公鯷則無顯著分群現象,應為單一系群。此分群現象與臺灣周遭洋流之季節交替系統相對應,夏季時棲息於南海西岸的異葉公鯷藉由南海海流到達台灣成育場,而冬季時東北季風增強,中國沿岸流順勢強度提升,導致南海暖流方向轉為順時針,此時南海東岸的異葉公鯷乘著黑潮支流得以到達台灣,因此可見春秋兩分立季節群;相反地,匯入台灣的刺公鯷主要源自菲律賓群島東岸之太平洋,整年由黑潮遷移至台灣繁殖,故並無系群分群現象。 目前臺灣地區全區適用之魩鱙管理,基於刺公鯷與日本鯷皆屬單一系群,沿岸魩鱙漁業以單一系群管理之規範應屬合理,然而多系群的異業公鯷受台灣周遭表層流影響甚巨,受氣候變遷(例如聖嬰現象)改變洋流系統,將連動影響異葉公鯷添入漁場的相對豐度,因此在長期管理上應納入氣候變遷因子,以達魩鱙漁業永續經營之目標。 | zh_TW |
dc.description.abstract | Bua fisheries are commonly practiced in the coast of Taiwan by artisanal fishermen. Annual abundance of the Bua resources varied, and two congener anchovies are main catch components (e.g., short-head anchovy (Encrasicholina heteroloba) & Buccaneer anchovy (E. punctifer)). Based on the fact that the catch composition varied spatiotemporally, we hypothesize that their recruitment is related with seasonal flow pattern in the southern waters of Taiwan. Nonetheless, these anchovies originated from a single or multiple sources still remain unclear. This study provides important data to improve management plan of the Bua fisheries in achieving their sustainability.
To test the hypothesis, I prepared samples that obtained from 2011 to 2013, with 3 geographic nursery grounds of the northeastern (NE), northwestern (NW) and southwestern (SW) Taiwan. Population distinction was quantified by morphological shape differences and degree of molecular segregation. The shape differences reflecting phenotypic responses were analyzed by multivariate statistics. Molecular segregation showing in DNA differences were measured through mitochondrial cytochrome b gene. The results revealed that annual and spatial distinction for short-head and Buccaneer anchovies were insignificant. However, seasonal difference was detected for short-head anchovy, indicating multiple cohort might recruit to the coastal nursery grounds and the recruitment pattern can be explained by the prevailing marine current system in the vicinity of Taiwan. During summer-autumn period, short-head anchovy in the western South China Sea (SCS) migrates north with South China Sea Surface Current (SCSSC) reaching to the coasts of Taiwan. In winter-spring, the east SCS residents migrate to Taiwan due to strengthened northeast monsoon that lessens SCSSC, and promotes Kuroshio Branch Current (KBC) moving waters into Taiwan Strait. Alternating circulation driven by seasonal monsoon results in subpopulation of the short-head anchovy. Nonetheless, Buccaneer anchovy is located in east of Philippines to the Pacific Ocean side, where the geostrophic Kuroshio Current (KC) flows year round with no seasonal segregation. Currently, a unified management plan, established in 2000 is rated reasonable at present for simplicity of regulation, because single stock is found with Buccaneer and Japonicas anchovy. However, climatic changes may have effects on the flow pattern of ocean currents, and subsequently affect the recruitment of short-head anchovy. Therefore, special treatment is also needed when long-term management plan is considered. | en |
dc.description.provenance | Made available in DSpace on 2021-06-15T16:12:01Z (GMT). No. of bitstreams: 1 ntu-104-R02b21013-1.pdf: 3045305 bytes, checksum: be3979a2750f4f90f9e74d3301b2f578 (MD5) Previous issue date: 2015 | en |
dc.description.tableofcontents | 謝辭 II
摘要 III Abstract V Introductions 1 1. Engraulid ecological features and geographical distributions 1 1. Application on larval fishery 2 2. Recruitment patterns of Engraulid larvae 4 3. Identify migratory sources 6 Materials and Methods 7 1. Specimens collection 7 1.1. Field sampling designed 7 1.1. Voucher specimens 8 2. Morphometric analyses 9 2.1. Traditional morphometric 9 1.1. Geometric morphometric 9 2. Genetic analyses 12 2.1. DNA extraction 12 1.1. PCR amplification 13 1.2. DNA sequence calibration and alignment 14 1.3. Population patterns of genetic diversity 14 1.1. Additional phylogenetic relationship analysis 17 Results 18 1. Short-head anchovy (Encrasicholina heteroloba) larvae 18 1.1. Traditional morphology 18 1.1. Shear analysis 20 1.2. Gene diversity 21 1.3. Intraspecific differences 22 2. Buccaneer anchovy (Encrasicholina punctifer) larvae 24 2.1. Traditional morphology 24 1.1. Shear analysis 26 1.2. Gene diversity 27 2.2. Intraspecific differences 28 3. Juvenile anchovies comparison 29 4. Phylogeography analyses of Buccaneer anchovy 30 Discussions 32 1. Contrasting patterns of population structure 32 1. Recruitment pattern fit hydrography seasonal alternation 35 2. Bua fishery management 37 3. Unknown Encrasicholina species 38 References 40 Tables 45 Figures 74 | |
dc.language.iso | en | |
dc.title | 臺灣周邊水域異葉公鯷與刺公鯷之系群分析 | zh_TW |
dc.title | Stock Analyses on the Short-head and Buccaneer Anchovies in the Waters around Taiwan | en |
dc.type | Thesis | |
dc.date.schoolyear | 103-2 | |
dc.description.degree | 碩士 | |
dc.contributor.oralexamcommittee | 謝志豪(Chih-Hao Hsieh),廖正信(Cheng-Hsin Liao),陳志炘(Chih-Shin Chen) | |
dc.subject.keyword | 漁業資源,異葉公鯷,刺公鯷,細胞色素b, | zh_TW |
dc.subject.keyword | Fishery resources,Encrasicholina heteroloba,E. punctifer,Cytochrome b, | en |
dc.relation.page | 99 | |
dc.rights.note | 有償授權 | |
dc.date.accepted | 2015-08-18 | |
dc.contributor.author-college | 生命科學院 | zh_TW |
dc.contributor.author-dept | 生命科學系 | zh_TW |
顯示於系所單位: | 生命科學系 |
文件中的檔案:
檔案 | 大小 | 格式 | |
---|---|---|---|
ntu-104-1.pdf 目前未授權公開取用 | 2.97 MB | Adobe PDF |
系統中的文件,除了特別指名其著作權條款之外,均受到著作權保護,並且保留所有的權利。