Skip navigation

DSpace

機構典藏 DSpace 系統致力於保存各式數位資料(如:文字、圖片、PDF)並使其易於取用。

點此認識 DSpace
DSpace logo
English
中文
  • 瀏覽論文
    • 校院系所
    • 出版年
    • 作者
    • 標題
    • 關鍵字
    • 指導教授
  • 搜尋 TDR
  • 授權 Q&A
    • 我的頁面
    • 接受 E-mail 通知
    • 編輯個人資料
  1. NTU Theses and Dissertations Repository
  2. 醫學院
  3. 微生物學科所
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/41393
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor王錦堂
dc.contributor.authorMing-Yang Tsaoen
dc.contributor.author曹銘陽zh_TW
dc.date.accessioned2021-06-15T00:18:00Z-
dc.date.available2009-09-15
dc.date.copyright2009-09-15
dc.date.issued2009
dc.date.submitted2009-04-23
dc.identifier.citation1. Alamuri, P., and R. J. Maier. 2004. Methionine sulphoxide reductase is an important antioxidant enzyme in the gastric pathogen Helicobacter pylori. Mol. Microbiol. 53:1397-1406.
2. Amblar, M., and C. M. Arraiano. 2005. A single mutation in Escherichia coli ribonuclease II inactivates the enzyme without affecting RNA binding. FEBS J. 272:363-374.
3. Andrade, J. M., F. Cairrao, and C. M. Arraiano. 2006. RNase R affects gene expression in stationary phase: regulation of ompA. Mol. Microbiol. 60:219-228.
4. Ang, S., C. Z. Lee, K. Peck, M. Sindici, U. Matrubutham, M. A. Gleeson, and J. T. Wang. 2001. Acid-induced gene expression in Helicobacter pylori: study in genomic scale by microarray. Infect. Immun. 69:1679-1686.
5. Basak, C., S. K. Pathak, A. Bhattacharyya, S. Pathak, J. Basu, and M. Kundu. 2005. The secreted peptidyl prolyl cis,trans-isomerase HP0175 of Helicobacter pylori induces apoptosis of gastric epithelial cells in a TLR4- and apoptosis signal-regulating kinase 1-dependent manner. J. Immunol. 174:5672-5680.
6. Blaser, M. J. 1992. Hypotheses on the pathogenesis and natural history of Helicobacter pylori-induced inflammation. Gastroenterology 102:720-727.
7. Brahmachary, P., M. G. Dashti, J. W. Olson, and T. R. Hoover. 2004. Helicobacter pylori FlgR is an enhancer-independent activator of sigma54-RNA polymerase holoenzyme. J. Bacteriol. 186:4535-4542.
8. Cairrao, F., A. Cruz, H. Mori, and C. M. Arraiano. 2003. Cold shock induction of RNase R and its role in the maturation of the quality control mediator SsrA/tmRNA. Mol. Microbiol. 50:1349-1360.
9. Censini, S., C. Lange, Z. Xiang, J. E. Crabtree, P. Ghiara, M. Borodovsky, R. Rappuoli, and A. Covacci. 1996. cag, a pathogenicity island of Helicobacter pylori, encodes type I-specific and disease-associated virulence factors. Proc. Natl. Acad. Sci. USA 93:14648-14653.
10. Chang, K. C., S. W. Ho, J. C. Yang, and J. T. Wang. 1997. Isolation of a genetic locus associated with metronidazole resistance in Helicobacter pylori. Biochem. Biophys. Res. Commun. 236:785-788.
11. Cheng, Z. F., and M. P. Deutscher. 2005. An important role for RNase R in mRNA decay. Mol. Cell 17:313-318.
12. Cheng, Z. F., Y. Zuo, Z. Li, K. E. Rudd, and M. P. Deutscher. 1998. The vacB gene required for virulence in Shigella flexneri and Escherichia coli encodes the exoribonuclease RNase R. J. Biol. Chem. 273:14077-14080.
13. Chevalier, C., J. M. Thiberge, R. L. Ferrero, and A. Labigne. 1999. Essential role of Helicobacter pylori gamma-glutamyltranspeptidase for the colonization of the gastric mucosa of mice. Mol. Microbiol. 31:1359-1372.
14. Covacci, A., J. L. Telford, G. Del Giudice, J. Parsonnet, and R. Rappuoli. 1999. Helicobacter pylori virulence and genetic geography. Science 284:1328-1333.
15. Eaton, K. A., D. R. Morgan, and S. Krakowka. 1992. Motility as a factor in the colonisation of gnotobiotic piglets by Helicobacter pylori. J. Med. Microbiol. 37:123-127.
16. Fan, X. G., D. Kelleher, X. J. Fan, H. X. Xia, and P. W. Keeling. 1996. Helicobacter pylori increases proliferation of gastric epithelial cells. Gut 38:19-22.
17. Gobert, A. P., Y. Cheng, J. Y. Wang, J. L. Boucher, R. K. Iyer, S. D. Cederbaum, R. A. Casero, Jr., J. C. Newton, and K. T. Wilson. 2002. Helicobacter pylori induces macrophage apoptosis by activation of arginase II. J. Immunol. 168:4692-4700.
18. Heuermann, D., and R. Haas. 1998. A stable shuttle vector system for efficient genetic complementation of Helicobacter pylori strains by transformation and conjugation. Mol. Gen. Genet. 257:519-528.
19. Hsieh, P. F., J. C. Yang, J. T. Lin, and J. T. Wang. 1998. Molecular mechanisms of clarithromycin resistance in Helicobacter pylori. J. Formos. Med. Assoc. 97:445-452.
20. Karzai, A. W., and R. T. Sauer. 2001. Protein factors associated with the SsrA.SmpB tagging and ribosome rescue complex. Proc. Natl. Acad. Sci. USA 98:3040-3044.
21. Kasai, T., R. S. Gupta, and D. Schlessinger. 1977. Exoribonucleases in wild type Escherichia coli and RNase II-deficient mutants. J. Biol. Chem. 252:8950-8956.
22. Khemici, V., and A. J. Carpousis. 2004. The RNA degradosome and poly(A) polymerase of Escherichia coli are required in vivo for the degradation of small mRNA decay intermediates containing REP-stabilizers. Mol. Microbiol. 51:777-790.
23. Kim, K. M., S. G. Lee, M. G. Park, J. Y. Song, H. L. Kang, W. K. Lee, M. J. Cho, K. H. Rhee, H. S. Youn, and S. C. Baik. 2007. Gamma-glutamyltranspeptidase of Helicobacter pylori induces mitochondria-mediated apoptosis in AGS cells. Biochem. Biophys. Res. Commun. 355:562-567.
24. Kostrzynska, M., J. D. Betts, J. W. Austin, and T. J. Trust. 1991. Identification, characterization, and spatial localization of two flagellin species in Helicobacter pylori flagella. J. Bacteriol. 173:937-946.
25. Le'Negrate, G., V. Ricci, V. Hofman, B. Mograbi, P. Hofman, and B. Rossi. 2001. Epithelial intestinal cell apoptosis induced by Helicobacter pylori depends on expression of the cag pathogenicity island phenotype. Infect. Immun. 69:5001-5009.
26. Li, Z., S. Reimers, S. Pandit, and M. P. Deutscher. 2002. RNA quality control: degradation of defective transfer RNA. Embo J. 21:1132-1138.
27. Marshall, B. J., and J. R. Warren. 1984. Unidentified curved bacilli in the stomach of patients with gastritis and peptic ulceration. Lancet 1:1311-1315.
28. Mathy, N., L. Benard, O. Pellegrini, R. Daou, T. Wen, and C. Condon. 2007. 5'-to-3' exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5' stability of mRNA. Cell 129:681-692.
29. McGee, D. J., M. L. Langford, E. L. Watson, J. E. Carter, Y. T. Chen, and K. M. Ottemann. 2005. Colonization and inflammation deficiencies in Mongolian gerbils infected by Helicobacter pylori chemotaxis mutants. Infect. Immun. 73:1820-1827.
30. Menaker, R. J., P. J. Ceponis, and N. L. Jones. 2004. Helicobacter pylori induces apoptosis of macrophages in association with alterations in the mitochondrial pathway. Infect. Immun. 72:2889-2898.
31. Moss, S. F. 1998. Helicobacter pylori and apoptosis. Yale J. Biol. Med. 71:53-61.
32. Nomura, A., G. N. Stemmermann, P. H. Chyou, I. Kato, G. I. Perez-Perez, and M. J. Blaser. 1991. Helicobacter pylori infection and gastric carcinoma among Japanese Americans in Hawaii. N. Engl. J. Med. 325:1132-1136.
33. Ottemann, K. M., and A. C. Lowenthal. 2002. Helicobacter pylori uses motility for initial colonization and to attain robust infection. Infect. Immun. 70:1984-1990.
34. Oussenko, I. A., R. Sanchez, and D. H. Bechhofer. 2002. Bacillus subtilis YhaM, a member of a new family of 3'-to-5' exonucleases in gram-positive bacteria. J. Bacteriol. 184:6250-6259.
35. Parsonnet, J., G. D. Friedman, D. P. Vandersteen, Y. Chang, J. H. Vogelman, N. Orentreich, and R. K. Sibley. 1991. Helicobacter pylori infection and the risk of gastric carcinoma. N. Engl. J. Med. 325:1127-1131.
36. Rader, B. A., S. R. Campagna, M. F. Semmelhack, B. L. Bassler, and K. Guillemin. 2007. The quorum-sensing molecule autoinducer 2 regulates motility and flagellar morphogenesis in Helicobacter pylori. J. Bacteriol. 189:6109-6117.
37. Schmitz, A., C. Josenhans, and S. Suerbaum. 1997. Cloning and characterization of the Helicobacter pylori flbA gene, which codes for a membrane protein involved in coordinated expression of flagellar genes. J. Bacteriol. 179:987-997.
38. Suerbaum, S., C. Josenhans, and A. Labigne. 1993. Cloning and genetic characterization of the Helicobacter pylori and Helicobacter mustelae flaB flagellin genes and construction of H. pylori flaA- and flaB-negative mutants by electroporation-mediated allelic exchange. J. Bacteriol. 175:3278-3288.
39. Tiwari, S., U. Ghoshal, U. C. Ghoshal, S. Dhingra, R. Pandey, M. Singh, A. Ayyagari, and S. Naik. 2005. Helicobacter pylori-induced apoptosis in pathogenesis of gastric carcinoma. Indian J. Gastroenterol. 24:193-196.
40. Tobe, T., C. Sasakawa, N. Okada, Y. Honma, and M. Yoshikawa. 1992. vacB, a novel chromosomal gene required for expression of virulence genes on the large plasmid of Shigella flexneri. J. Bacteriol. 174:6359-6367.
41. Williams, S. M., Y. T. Chen, T. Andermann, J. E. Carter, D. J. McGee, and K. M. Ottemann. 2007. Helicobacter pylori chemotaxis modulates inflammation and gastric-epithelium interactions in infected mice. Infect. Immun. 75:3747-3757.
42. Wotherspoon, A. C., C. Doglioni, T. C. Diss, L. Pan, A. Moschini, M. de Boni, and P. G. Isaacson. 1993. Regression of primary low-grade B-cell gastric lymphoma of mucosa-associated lymphoid tissue type after eradication of Helicobacter pylori. Lancet 342:575-577.
43. Xu, Q., and M. J. Blaser. 2001. Promoters of the CATG-specific methyltransferase gene hpyIM differ between iceA1 and iceA2 Helicobacter pylori strains. J. Bacteriol. 183:3875-3884.
44. Yeh, Y. C., T. L. Lin, K. C. Chang, and J. T. Wang. 2003. Characterization of a ComE3 homologue essential for DNA transformation in Helicobacter pylori. Infect. Immun. 71:5427-5431.
45. Zhu, Y., C. Wang, J. Huang, Z. Ge, Q. Dong, X. Zhong, Y. Su, and S. Zheng. 2007. The Helicobacter pylori virulence factor CagA promotes Erk1/2-mediated Bad phosphorylation in lymphocytes: a mechanism of CagA-inhibited lymphocyte apoptosis. Cell Microbiol. 9:952-961.
46. Zukowski, M. M., D. F. Gaffney, D. Speck, M. Kauffmann, A. Findeli, A. Wisecup, and J. P. Lecocq. 1983. Chromogenic identification of genetic regulatory signals in Bacillus subtilis based on expression of a cloned Pseudomonas gene. Proc. Natl. Acad. Sci. USA 80:1101-1105.
dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/41393-
dc.description.abstract幽門螺旋桿菌 (Helicobacter pylori),人類消化道相當重要的病原菌,有著許多的毒性因子參與致病過程,但是這些毒性因子的調控機制卻還未被全部了解。在此研究中,我們利用一幽門螺旋桿菌的表現基因庫,經由chlorhexidine的篩選,選殖到了 HP1248可能是一個抗chlorhexidine的相關基因,其序列相似於大腸桿菌的vacB序列;但進一步研究卻顯示出此結果可能是過度表現所造成的人工現象或間接影響。在之前研究,vacB與志賀氏菌屬(Shigella)和腸侵入型大腸桿菌(enteroinvasive E. coli.)的毒性表現有密切相關。大腸桿菌的vacB 表現出的蛋白質是RNase R。RNase R參與在後轉錄(post-transcriptional)層級中mRNA的穩定性調控。藉由幽門螺旋桿菌HP1248剔除突變菌株全面性的轉錄層級微陣列分析,我們找到六個致病相關基因在後轉錄層級中被HP1248所抑制表現,包括了運動性相關基因:HP1192和flaB,趨化性相關基因:cheY,和細胞凋亡引發因子相關基因:HP0175,cagA和 gtt。在本篇研究中,在大腸桿菌表現的重組HP1248 蛋白質可表現出3端至5端核醣核酸外水解酶活性。在幽門螺旋桿菌HP1248剔除突變菌株的運動能力和引發宿主細胞的細胞凋亡能力也都有顯著增加。我們的研究也顯示HP1192和幽門螺旋桿菌的運動性確實有相關,而且很可能是經由HP1248的調控。更進一步,我們亦研究並推測出被HP1248所特定調控的這些致病相關基因的可能的機制。除此之外,HP1248 mRNA的表現量會隨著不同的環境因子而有明顯的改變,包括pH值和溫度。因此,幽門螺旋桿菌的HP1248 似乎在對外在環境的感受扮演相當重要的角色,並且進一步來調控細菌的運動性與引發宿主細胞凋亡的相關因子...等致病相關的基因表現。zh_TW
dc.description.abstractThe human gastric pathogen Helicobacter pylori has many virulence factors involved in pathogenesis, but the mechanisms regulating these virulence factors are not yet fully understood. In this study, we cloned HP1248 during a screen for chlorhexidine-resistant clones in an expression library of H. pylori. HP1248, which is similar in sequence to Escherichia coli vacB, was previously shown to be associated with the expression of virulence in Shigella and enteroinvasive E. coli. E. coli vacB encodes RNase R. RNase R is involved in the post-transcriptional regulation of mRNA stability. By global transcriptional microarray profiling of an H. pylori HP1248-deletion mutant, we defined six virulence related genes which were post-transcriptionally down-regulated by HP1248, including the motility related genes HP1192 and flaB, the chemotaxis related gene cheY, and the apoptosis-inducing genes HP0175, cagA, and gtt. In this study, recombinant HP1248 protein expressed in E. coli showed 3'-to-5' exoribonuclease activity. Motility and apoptosis-induction were increased in the H. pylori HP1248-deletion mutant. We also showed that HP1192 is associated with H. pylori motility, possibly through HP1248 regulation. Further, we suggested and studied the possible mechanisms of this specific regulation of virulent genes by HP1248. In addition, the expression level of HP1248 mRNA changes dramatically in response to a variety of altered environmental conditions, including pH and temperature. Hence, HP1248 in H. pylori seems to play a role in environmental sensing and in regulation of virulent phenotypes, such as motility and host-apoptosis induction.en
dc.description.provenanceMade available in DSpace on 2021-06-15T00:18:00Z (GMT). No. of bitstreams: 1
ntu-98-D92445001-1.pdf: 1512426 bytes, checksum: 265632ff8b16fd5434bad00156c9b903 (MD5)
Previous issue date: 2009
en
dc.description.tableofcontents中文摘要─────────────────────────1
英文摘要─────────────────────────3
第一章 緒論───────────────────────5
第二章 材料───────────────────────10
2.1 幽門螺旋桿菌菌株 (H. pylori strain)─────────10
2.2 大腸桿菌菌株 (E. coli strains)────────────10
2.3 引子 (Primers)───────────────────11
2.4 質體 (Plasmids)───────────────────12
2.5 培養基 (Mediums)──────────────────13
2.6 抗生素和抑菌劑 (Antibiotics and Antiseptic )────14
2.7 限制酶 (Restriction enzyme)─────────────14
第三章 方法───────────────────────15
3.1 細菌菌株的生長條件─────────────────15
3.2 建構幽門螺旋桿菌的剔除突變株,過量表現突變株和補償株15
3.3 RNA的抽取────────────────────17
3.4 微陣列雜交與數據分析────────────────18
3.5 Slot blot───────────────────── 20
3.6 蛋白質的表現與純化─────────────────21
3.7 核醣核酸水解酶(Ribonuclease)活性分析───────22
3.8 運動性能力分析───────────────────23
3.9 真核細胞的培養與ELISA細胞凋亡定量分析───────23
3.10 建構xylE reporter基因與XylE活性定量分析──────24
第四章 結果───────────────────────27
4.1 HP1248基因的選殖───────────────27
4.2 在微陣列分析中幽門螺旋桿菌的基因表現────────28
4.3 利用slot blotting的基因表現結果來確認微陣列分析的結果─29
4.4 HP1248參與致病相關基因在後轉錄(post-transcriptional)層級的調控─29
4.5 HP1248是3端至5端核酸核醣外水解酶(3'-to-5' exoribonuclease)──────────30
4.6 幽門螺旋桿菌HP1248剔除突變菌株表現較高的運動性能力與較高的引發細胞凋亡能力 ──────────────32
4.7 HP1192與幽門螺旋桿菌的運動性有相關 ─────────33
4.8 在幽門螺旋桿菌當HP1248蛋白質和特定RNase辨識序列同時存在mRNA可以減少該基因的表現 ────────────────34
4.9 溫度和pH值可以影響幽門螺旋桿菌的HP1248表現─────36
第五章 討論───────────────────────38
第六章 參考文獻─────────────────────44
dc.language.isozh-TW
dc.subject致病基因zh_TW
dc.subject幽門螺旋桿菌zh_TW
dc.subject核醣核酸外水解&#37238zh_TW
dc.subjectHelicobacter pylorien
dc.subjectexoribonucleaseen
dc.subjectHP1248en
dc.titleHP1248為3端至5端核醣核酸外水解酶之基因並調控幽門螺旋桿菌運動性與細胞凋亡引發因子等致病相關基因之表現zh_TW
dc.titleThe 3'-to-5' exoribonuclease (Encoded by HP1248) of Helicobacter pylori regulates motility and apoptosis-inducing genesen
dc.typeThesis
dc.date.schoolyear97-2
dc.description.degree博士
dc.contributor.oralexamcommittee鄧述諄,李芳仁,賴信志,張晃猷
dc.subject.keyword幽門螺旋桿菌,核醣核酸外水解&#37238,致病基因,zh_TW
dc.subject.keywordHelicobacter pylori,exoribonuclease,HP1248,en
dc.relation.page76
dc.rights.note有償授權
dc.date.accepted2009-04-24
dc.contributor.author-college醫學院zh_TW
dc.contributor.author-dept微生物學研究所zh_TW
顯示於系所單位:微生物學科所

文件中的檔案:
檔案 大小格式 
ntu-98-1.pdf
  未授權公開取用
1.48 MBAdobe PDF
顯示文件簡單紀錄


系統中的文件,除了特別指名其著作權條款之外,均受到著作權保護,並且保留所有的權利。

社群連結
聯絡資訊
10617臺北市大安區羅斯福路四段1號
No.1 Sec.4, Roosevelt Rd., Taipei, Taiwan, R.O.C. 106
Tel: (02)33662353
Email: ntuetds@ntu.edu.tw
意見箱
相關連結
館藏目錄
國內圖書館整合查詢 MetaCat
臺大學術典藏 NTU Scholars
臺大圖書館數位典藏館
本站聲明
© NTU Library All Rights Reserved