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  1. NTU Theses and Dissertations Repository
  2. 生命科學院
  3. 生化科學研究所
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/37842
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor王廷方(Ting-Fang Wang)
dc.contributor.authorChien-Der Leeen
dc.contributor.author李建德zh_TW
dc.date.accessioned2021-06-13T15:46:49Z-
dc.date.available2008-07-07
dc.date.copyright2008-07-07
dc.date.issued2008
dc.date.submitted2008-06-30
dc.identifier.citationBenedict, R.C., and Kowalczykowski, S.C. 1988. Increase of the DNA strand assimilation activity of recA protein by removal of the C terminus and structure-function studies of the resulting protein fragment. J Biol Chem 263: 15513-15520.
Butt, T.R., Edavettal, S.C., Hall, J.P., and Mattern, M.R. 2005. SUMO fusion technology for difficult-to-express proteins. Protein Expr Purif 43: 1-9.
Catanzariti, A.M., Soboleva, T.A., Jans, D.A., Board, P.G., and Baker, R.T. 2004. An efficient system for high-level expression and easy purification of authentic recombinant proteins. Protein Sci 13: 1331-1339.
Catic, A., Misaghi, S., Korbel, G.A., and Ploegh, H.L. 2007. ElaD, a Deubiquitinating protease expressed by E. coli. PLoS ONE 2: e381.
Chen, L.T., Ko, T.P., Chang, Y.C., Lin, K.A., Chang, C.S., Wang, A.H.J., and Wang, T.F. 2007. Crystal structure of the left-handed archaeal RadA helical filament: identification of a functional motif for controlling quaternary structures and enzymatic functions of RecA family proteins. Nucleic Acids Res. 35: 1787-1801.
Chen, Y.K., Leng, C.H., Olivares, H., Lee, M.H., Chang, Y.C., Kung, W.M., Ti, S.C., Lo, Y.H., Wang, A.H., Chang, C.S., et al. 2004. Heterodimeric complexes of Hop2 and Mnd1 function with Dmc1 to promote meiotic homolog juxtaposition and strand assimilation. Proc Natl Acad Sci U S A 101: 10572-10577.
Chen, Z., Yang, H., and Pavletich, N.P. 2008. Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures. Nature 453: 489-484.
Cox, M.M. 2007. Motoring along with the bacterial RecA protein. Nat Rev Mol Cell Biol 8: 127-138.
Cox, M.M., McEntee, K., and Lehman, I.R. 1981. A simple and rapid procedure for the large scale purification of the recA protein of Escherichia coli. J Biol Chem 256: 4676-4678.
Lee, M.H., Leng, C.H., Chang, Y.C., Chou, C.C., Chen, Y.K., Hsu, F.F., Chang, C.S., Wang, A.H., and Wang, T.F. 2004. Self-polymerization of archaeal RadA protein into long and fine helical filaments. Biochem Biophys Res Commun 323: 845-851.
Malakhov, M.P., Mattern, M.R., Malakhova, O.A., Drinker, M., Weeks, S.D., and Butt, T.R. 2004. SUMO fusions and SUMO-specific protease for efficient expression and purification of proteins. J Struct Funct Genomics 5: 75-86.
Marblestone, J.G., Edavettal, S.C., Lim, Y., Lim, P., Zuo, X., and Butt, T.R. 2006. Comparison of SUMO fusion technology with traditional gene fusion systems: enhanced expression and solubility with SUMO. Protein Sci 15: 182-189.
Mikawa, T., Masui, R., Ogawa, T., Ogawa, H., and Kuramitsu, S. 1995. N-terminal 33 amino acid residues of Escherichia coli RecA protein contribute to its self-assembly. J Mol Biol 250: 471-483.
Mossessova, E., and Lima, C.D. 2000. Ulp1-SUMO crystal structure and genetic analysis reveal conserved interactions and a regulatory element essential for cell growth in yeast. Mol Cell 5: 865-876.
Story, R.M., Weber, I.T., and Steitz, T.A. 1992. The structure of the E. coli recA protein monomer and polymer. Nature 355: 318-325.
Sung, P. 1994. Catalysis of ATP-dependent homologous DNA pairing and strand exchange by yeast RAD51 protein. Science 265: 1241-1243.
Tateishi, S., Horii, T., Ogawa, T., and Ogawa, H. 1992. C-terminal truncated Escherichia coli RecA protein RecA5327 has enhanced binding affinities to single- and double-stranded DNAs. J Mol Biol 223: 115-129.
Van Komen, S., Macris, M., Sehorn, M.G., and Sung, P. 2006. Purification and assays of Saccharomyces cerevisiae homologous recombination proteins. Methods Enzymol 408: 445-463.
VanLoock, M.S., Yu, X., Yang, S., Lai, A.L., Low, C., Campbell, M.J., and Egelman, E.H. 2003. ATP-mediated conformational changes in the RecA filament. Structure 11: 187-196.
Wang, T.F., Chang, J.H., and Wang, C. 1993. Identification of the peptide binding domain of hsc70. 18-Kilodalton fragment located immediately after ATPase domain is sufficient for high affinity binding. J Biol Chem 268: 26049-26051.
dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/37842-
dc.description.abstract對於在大腸桿菌中難以表現的重組蛋白,我們可以利用類泛素融合蛋白系統來增進其表現量。因為自然界中有小類泛素蛋白酶的存在,它會將小類泛素從融合蛋白上切除,如此一來更增進了此技術的效用。在打破大腸桿菌並取得上清液後,我們可以僅利用一根鎳離子層析管柱就完成融合蛋白的純化及類泛素切除的動作。經由以上的步驟,洗出液即是我們想要的天然蛋白質。如此單管柱方法適合發展成更高效率的蛋白純化平台。另外特別的一點是,這套新系統可以有效的表達,並迅速的純化一些難以表現蛋白質。我們便利用這套系統來純化大腸桿菌RecA的N端區域突變蛋白,並證實大腸桿菌RecA的N端區域在同源重組時有結合雙股核醣核酸的能力,並能促進下游三股交換反應的發生。zh_TW
dc.description.abstractExpression of recombinant proteins as fusions with SUMO (small ubiquitin-related modifier) protein has significantly increased the yield of difficult-to-express proteins in Escherichia coli. The benefit of this technique is further enhanced by the availability of naturally occurring SUMO proteases, which remove SUMO from the fusion protein. Here we have improved the exiting SUMO fusion protein approach for effective production of native proteins. One can carry out both fusion protein purification and SUMO protease cleavage using one Ni2+-resin column. The eluant contains only the native target protein. Such a one-column protocol is useful in developing a better high-throughput platform. Especially, this new system was shown to be effective for expression, and rapid purification of several difficult-to-produce authentic proteins. Using this system, we purified the E. coli RecA N terminal mutant protein and reinvestigate the E. coli RecA N terminal domain (NTD), and suggest it is involved in dsDNA binding and promote the three-strand exchange reaction.en
dc.description.provenanceMade available in DSpace on 2021-06-13T15:46:49Z (GMT). No. of bitstreams: 1
ntu-97-R95b46031-1.pdf: 2661864 bytes, checksum: 1c12cd11bcffa0e2cb7a7aca0d0f73d0 (MD5)
Previous issue date: 2008
en
dc.description.tableofcontents中文摘要...................................................1
Abstract...................................................2
Index......................................................3
List of Abbreviations......................................5
1. Introduction............................................6
1-1. SUMO fusion protein expression system 6
1-2. RecA family proteins play a key role in homologous recombination 7
1-3. The new model of RecA family proteins 8
1-4. The N terminal domain of E. coli RecA 10
2. Material and Methods...................................................12 2-1. Protein expression and purification 12
2-2. Electron microscopy 13
2-3. D-loop assay 14
2-4. Electrophoretic mobility shift assay 15
2-5. DNA substrate 15
3. Results.............................................16
3-1. Using the SUMO fusion protein approach to express the E.coli RecA protein 16
3-2. On-resin proteolytic cleavage of the His6-Smt3-X fusion protein to yield authentic (X) protein 17
3-3. In the presence of ATP and AMP-PNP, RecA NTDmutants show different activities 18
3-4. In the presence of ATPgS, RecA NTD mutants show similar activities 21
4. Discussion..........................................23
5. Figures.............................................25
5-1. Figure1: E. coli RecA plays a key role in homologous recombination. 25
5-2. Figure2: Compare the specificity of common protease and SUMO protease. 26
5-3. Figure3: The rapid one column strategy and purification of several difficult-to-produce authentic proteins. 27
5-4. Figure4: E. coli RecA N terminal domain may play an important role in homologous recombination. 28
5-5. Figure5: These E. coli RecA N terminal domain mutations have no defect in filament formation 30
5-6. Figure6: RecA N terminal domain plays an important role in homologous recombination. 31
6. References..........................................32
7. Appendix............................................36
7-1. An improved SUMO fusion proteins system for effective production of native protein 36
dc.language.isozh-TW
dc.subject同源重組,三股交換,重組酵素,類泛素,融合蛋白zh_TW
dc.subject fusion proteinen
dc.subjecthomologous recombinationen
dc.subject three-strand exchangeen
dc.subject RecAen
dc.subject SUMOen
dc.title有效表現天然蛋白質的改良式類泛素融合蛋白系統zh_TW
dc.titleAn improved SUMO fusion protein system for effective production of native proteinsen
dc.typeThesis
dc.date.schoolyear96-2
dc.description.degree碩士
dc.contributor.oralexamcommittee薛一蘋(Yi-Ping Hsueh),冷治湘(Chih-Hsiang Leng)
dc.subject.keyword同源重組,三股交換,重組酵素,類泛素,融合蛋白,zh_TW
dc.subject.keywordhomologous recombination, three-strand exchange, RecA, SUMO, fusion protein,en
dc.relation.page43
dc.rights.note有償授權
dc.date.accepted2008-06-30
dc.contributor.author-college生命科學院zh_TW
dc.contributor.author-dept生化科學研究所zh_TW
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